Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00007 ATGGCCTCTGTTTCAGCTACCTCTCTTAGGTTCCAGCTACCGCCCAACCAACATTCCAAGATCTACCAGGAAGACGGCGGCGCTGATAGGCACTCCAGCTTCTTATCTTTGAAATCCTCCTTCTTCTCTCCTTTACGTAACATTCCTTCTTTAAGGAAGCAAAACTCTGCTGTTGCAGCTGCCCCCAAGGTCTCCATGCGCGTCGCGTCCAAACAAGCCTATATCTGTCGTGATTGCGGGTACATTTACAACGATAGAACGCCTTTTGAAAAATTGCCTGATAAGTATTTCTGTCCTGTTTGTGGTGCTCCTAAGCGACGATTTAGGCCTTATGAGCAATCTGTGACTAAAAATGCTAACGAATTTGATACGAGGAAGGCGAGAAAGGCACAGATCCAGAAAGATGAAGCTATTGGGAAGGTGCTGCCCATAGCTGCTGCAGTGGGAATCGTGGCACTTGTGCAAAAACCAGGAAATGTGCTTCACAAGGATAGGATGGTTAGCGAGATCGACCCAACAAAGTACAAGAATACCTTGCCCGGTTACAGTGCTCAGGGTGCCTGCAAGTTTGGATCCTACGAGTTCTTCAAGAACTACTATTCTTACATGGTTGGAACAGAGAATGCAGCCAACTACAAAACTTTCATATACCTTGCTGCTTCAGCGTCTGCAGAAGTCATTGCCGATGTTGCTCTTTGCCCCATGGAGGCCGTCAAAGTTGGCGTCCAAACTCTGAGGTCAATTCTGAAGGTGCTCTTGGATACCATGATGAAATTTGCCTCTTTCCAAACAATTGTTGAGAGGCTGTACACTTGTGCCATCCCAAGGCCTAAAGAGCAGTGTAGCAAATCCCTGCAGCTTGGAGTGAGATTGCTGCCAACAACTGGTGGCGCTACCACTGCTCCTGCCGCCAACAAGTCAAGGGGGGAGCCTGTTTGTGCACCCTAA 948 48.1 MASVSATSLRFQLPPNQHSKIYQEDGGADRHSSFLSLKSSFFSPLRNIPSLRKQNSAVAAAPKVSMRVASKQAYICRDCGYIYNDRTPFEKLPDKYFCPVCGAPKRRFRPYEQSVTKNANEFDTRKARKAQIQKDEAIGKVLPIAAAVGIVALVQKPGNVLHKDRMVSEIDPTKYKNTLPGYSAQGACKFGSYEFFKNYYSYMVGTENAANYKTFIYLAASASAEVIADVALCPMEAVKVGVQTLRSILKVLLDTMMKFASFQTIVERLYTCAIPRPKEQCSKSLQLGVRLLPTTGGATTAPAANKSRGEPVCAP 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 39304 41957 + CmoCh11G000070.1 Cmo11g00007 390626

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00007 315 SUPERFAMILY Rubredoxin-like 71 116 - -
Cmo11g00007 315 ProSiteProfiles Rubredoxin-like domain profile. 71 111 IPR024934 GO:0005506
Cmo11g00007 315 Gene3D - 72 111 - -
Cmo11g00007 315 Gene3D Mitochondrial carrier domain 138 283 IPR023395 -
Cmo11g00007 315 Pfam Rubredoxin 74 108 IPR024935 GO:0005506
Cmo11g00007 315 CDD rubredoxin 74 111 IPR024935 GO:0005506
Cmo11g00007 315 SUPERFAMILY Mitochondrial carrier 178 270 IPR023395 -
Cmo11g00007 315 PANTHER RUBREDOXIN-LIKE SUPERFAMILY PROTEIN 14 154 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00007 - - - cmos:111429830 254.988
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo10g00024 Cmo11g00007 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00007 Cmo-Chr11:39304 Cmo15g00842 Cmo-Chr15:4272535 1.72E-43 dispersed
Cmo10g00020 Cmo-Chr10:129311 Cmo11g00007 Cmo-Chr11:39304 1.28E-82 wgd
Cmo11g00007 Cmo-Chr11:39304 Cmo11g01578 Cmo-Chr11:11333119 1.96E-37 wgd
Cmo11g00007 Cmo-Chr11:39304 Cmo14g00771 Cmo-Chr14:3917356 4.19E-08 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g35 . . . . . Bpe13g00186 Bma06g00281 . . . Cma10g00026 Cma11g00008 Car10g00018 Car11g00008 . . . Bhi02g00524 . . . . . . Cla06g01777 Cam06g1970 Cec06g2021 Cco06g2028 Clacu06g1928 Cmu06g1868 Cre06g2681 . . . Cone19ag0236 . . . . . . Bda11g01581 . . . . . . Cmo10g00024 Cmo11g00007 . . . . . Cpe18g00933 . . . . . . . . . . . . . . Lsi06g01674 Csa01g00018 Chy02g02696 Cme02g02103
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009535 1 2 1 1 1 1 1 0 0 1 1 1 2 1 1 2 1 2 0 1 1 0 1 1 1 1 1 1 3 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g00007 Cmo_Chr11 FPKM 27.014561 31.77232 80.757156 80.527565 118.13591 133.038834 123.589531 86.934479 86.013939 79.362183