Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00028 ATGGCGGACGTGATGCTGATGAAAGAGATCGAGGACACGGCTGGTCGTCTTGGGATAGATCTTTCCCAAGTTGATTTTGAGTCTATTCGTCTCCCTCCCGGCGAAGATTTTGGAATCATTAGTGATGATGAAGAGGTTCTACAAGAGGAGAGTCTAGAGTTTGATTCTGGTTTCGGAAACATTATAGTTGTTGGCAATCTTCCGGTTGTTCCTTCGGAGAAGTTTGAGAAGCTCGAAGGTGTTGTTCGTAAAATTTTTGGACAGATTGGAGTTATCAAGGATGATGGCCTATGGATGCCTGTTGACCCTACTACACAGAAAACTTTAGGGTACTGCTTTATTGAGTATGGCACTCCACAGGAGGCTGAGCTTGCCAAAGAGAAGACTGATGGGTACAAGTTGGATAGAGCACATATTTTCGCTGTTAATATGTTTGAGGACTTCGACAGATTTATGAAAGTCCCAGATGAGTGGGCTCCTCCTGAAAGTAACCCATATACTCCGGGGGAAAATATTCAACAGTGGCTTATGGATGAAAAAGCACGGGATCAGTTACTTATTCGTTCTGGTTCTGATACTGAGGTCTTCTGGAATGATGCTAGACATTTAAAGCCTGAGCCTGTCTACAAGCGTCCATTCTGGACTGAGAGTTATGTGCAGTGGTCCCCCTTGGGGACTTACCTAGCCACAATTCACCGGCAGGGTGCTGCAGTTTGGGGTGGAGCAGGTACCTTTAACCGTCTGATGCGCTTTGCCCATCCTCAGGTTAAGTTAATTGATTTTTCACCTGGTGAGAAATATCTGGTTACTTACAGCAGCCATGAGCCCAGCAATCCTCGTGATGCAAATAGGATTGTCATCAATATTTTTGATGTAAGAACTGGAAAAGTTATGAGAGATTTCAAGGGAAGTCCTGATGATTTTGCCATTGGAGGAACTGGTGGTGTTGCGGGCATATCTTGGCCTGTTTTTAGGTGGGGTGGTGGGAAAGATGATAAATACTTTGCCAGGATGGGGAAGAATGTAATTTCTGTCTATGAAACAGAGACTTTCTCCCTCATTGACAAAAAATCTTTGAAGGTTGAAAATGTTATGGATTTCTGCTGGTCCCCTACCGATCCCATTATTGCACTCTTTGTTCCTGAGCTAGGTGGTGGAAACCAACCGGCTAGGGTGAGTCTTGTGCAAATCCCGAGCAAAGAGGAGTTGAGACAGAAAAATCTTTTCAGTGTTAGCGATTGCAAAATGTACTGGCAAAGCAATGGGGACTATCTTGCTGTCAAGGTTGACCGATATACAAAGACCAAGAAAAGCATATACACAGGGTTTGAACTTTTCCGCATAAAAGAGCGGGATATACCTATTGAAGTGTTGGAGCTTGAGAATAAGAATGATAAGATCATTGCATTTGCCTGGGAGCCAAAGGGTCATAGGTTTGCAGTTATTCATGGTGACAACCCAAGGCCAGATATTAGCTTTTACTCCATGCGAAGCACTCACAACAGTGGCCGAGTATCAAAACTTACAACTCTAAAAGGCAAGCAGGCCAATGCTCTTTTCTGGTCACCTTCTGGACGCTTCATCATTCTGGCTGGTCTGAAAGGTTTCAACGGACAGTTGGAATTCTACAATGTTGATGAGCTGGAGACAATGGCAACTGCTGAGCATTTCATGGCTACTGATATTGAATGGGATCCTACTGGACGGTATGTTGCAACTGCTGTAACTTCAGTTCACGAGATGGAAAATGGTTTCAACATATGGTCCTTTAATGGAAAGCTGTTGTATCGAGTCTTGAAGGACCATTTCTTTCAGTTCGCATGGCGGCCAAGACCACCTTCCTTGTTGAGTGCGGAGAAAGAGGAAGAGATAGCAAAGAATTTGAAGAAGTACAGTAAGAAGTACGAGGCTGAAGATCAGGATGTATCTATGCTGCTGAGCGAGCAGGACCGGGAGAAGCGGAGGATGTTGAAGGAGGAGTGGGAGAAGTGGGTGAATGAATGGAAAAAATTGCATGAAGAAGAGAAGCAGTTGCGGCAAAAACTGCGGGATGGGGAAGCTAGTGATGAGGAAGAGGAATACGAAGCCAAAGAGGTTGAAGTAGAAGAGGTTTTGGATGTGTCGGAGGAAATTTTGTCTGTTGATTTTGGGCAGGAATGA 2160 44.49 MADVMLMKEIEDTAGRLGIDLSQVDFESIRLPPGEDFGIISDDEEVLQEESLEFDSGFGNIIVVGNLPVVPSEKFEKLEGVVRKIFGQIGVIKDDGLWMPVDPTTQKTLGYCFIEYGTPQEAELAKEKTDGYKLDRAHIFAVNMFEDFDRFMKVPDEWAPPESNPYTPGENIQQWLMDEKARDQLLIRSGSDTEVFWNDARHLKPEPVYKRPFWTESYVQWSPLGTYLATIHRQGAAVWGGAGTFNRLMRFAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRIVINIFDVRTGKVMRDFKGSPDDFAIGGTGGVAGISWPVFRWGGGKDDKYFARMGKNVISVYETETFSLIDKKSLKVENVMDFCWSPTDPIIALFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSIYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPRPDISFYSMRSTHNSGRVSKLTTLKGKQANALFWSPSGRFIILAGLKGFNGQLEFYNVDELETMATAEHFMATDIEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRVLKDHFFQFAWRPRPPSLLSAEKEEEIAKNLKKYSKKYEAEDQDVSMLLSEQDREKRRMLKEEWEKWVNEWKKLHEEEKQLRQKLRDGEASDEEEEYEAKEVEVEEVLDVSEEILSVDFGQE 719
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 119332 124316 - CmoCh11G000280.1 Cmo11g00028 390647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00028 719 CDD RRM_eIF3B 59 143 IPR034363 -
Cmo11g00028 719 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 48 713 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Cmo11g00028 719 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 81 136 IPR000504 GO:0003723
Cmo11g00028 719 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 147 IPR000504 GO:0003723
Cmo11g00028 719 SUPERFAMILY RNA-binding domain, RBD 56 139 IPR035979 GO:0003676
Cmo11g00028 719 SUPERFAMILY DPP6 N-terminal domain-like 217 600 - -
Cmo11g00028 719 MobiDBLite consensus disorder prediction 679 699 - -
Cmo11g00028 719 Gene3D - 410 631 IPR015943 GO:0005515
Cmo11g00028 719 Gene3D - 176 388 IPR015943 GO:0005515
Cmo11g00028 719 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 6 712 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Cmo11g00028 719 Coils Coil 618 638 - -
Cmo11g00028 719 Pfam Eukaryotic translation initiation factor eIF2A 406 606 IPR013979 -
Cmo11g00028 719 SMART rrm1_1 61 142 IPR000504 GO:0003723
Cmo11g00028 719 Coils Coil 687 707 - -
Cmo11g00028 719 PANTHER BNACNNG51870D PROTEIN 6 712 - -
Cmo11g00028 719 Gene3D - 59 143 IPR012677 -
Cmo11g00028 719 PIRSF Transl_init_eIF3b 7 714 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g01150 Cmo-Chr9:7175635 Cmo11g00028 Cmo-Chr11:119332 0 dispersed
Cmo11g00028 Cmo-Chr11:119332 Cmo14g01475 Cmo-Chr14:11922271 1.33E-26 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00028 K03253 - csv:101213144 1366.67