Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo11g00031 | ATGGAGAACAACAATCAAGCCCAATCCTCCCCTTACCCTCCTCCTCCTCCTCCTCCTCAGGCACCCGTCCCGGCCCCTCACTTCCACCACCTCCTCCAGCAGCAGCAGCAGCAGCTTCAGATGTTCTGGTCCTTTCAGCGCCAAGAAATCGAACAGGTTAACGATTTTAAAAACCACCAGCTTCCTTTGGCTCGCATTAAGAAGATCATGAAAGCCGACGAGGACGTGCGTATGATCTCCGCCGAAGCGCCCATTTTGTTCGCCAAGGCCTGCGAGCTCTTCATTCTGGAACTCACTATTAGGTCATGGCTTCACGCGGAGGAGAATAAGAGGCGGACATTGCAGAAGAACGATATTGCGGCGGCCATCACGAGGACCGATATCTTTGATTTCTTAGTTGATATTGTGCCTAGGGATGAAATCAAGGACGAAGCTGGATTGGGAGGCATGGTCGGAGCCACTGCTAGTGGAGTGCCCTACTATTACCCCCCTATGGGTCAACCGGCAGGGGCTCCCGGGGGGATGATGATTGGGAGACCGGCAATGGATCCCATCGGAGTTTACGCTCAGCCGCCGTCACAGGCCTGGCAGTCGGCGTGGCAGCCCTCGGCGGAGGACGGTTCTTACGCCAGTGGAGGCAACAGCGGGCAGGGCAATCTTGATGGTCAGAGGTAG | 675 | 56.0 | MENNNQAQSSPYPPPPPPPQAPVPAPHFHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRPAMDPIGVYAQPPSQAWQSAWQPSAEDGSYASGGNSGQGNLDGQR | 224 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 136282 | 136956 | + | CmoCh11G000310.1 | Cmo11g00031 | 390650 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo11g00031 | 224 | PANTHER | HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED | 1 | 223 | - | - | |
Cmo11g00031 | 224 | SUPERFAMILY | Histone-fold | 33 | 132 | IPR009072 | GO:0046982 | |
Cmo11g00031 | 224 | Gene3D | Histone, subunit A | 27 | 138 | IPR009072 | GO:0046982 | |
Cmo11g00031 | 224 | Pfam | Core histone H2A/H2B/H3/H4 | 43 | 123 | IPR007125 | GO:0003677 | |
Cmo11g00031 | 224 | MobiDBLite | consensus disorder prediction | 191 | 224 | - | - | |
Cmo11g00031 | 224 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Cmo11g00031 | 224 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-4 | 1 | 223 | - | - | |
Cmo11g00031 | 224 | MobiDBLite | consensus disorder prediction | 188 | 224 | - | - | |
Cmo11g00031 | 224 | MobiDBLite | consensus disorder prediction | 9 | 25 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo11g00031 | Cmo-Chr11:136282 | Cmo11g01160 | Cmo-Chr11:6703878 | 4.64E-69 | dispersed | |
Cmo10g00053 | Cmo-Chr10:248351 | Cmo11g00031 | Cmo-Chr11:136282 | 5.83E-135 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10505 | PF00808 | CBFD_NFYB_HMF | 2.30E-17 | CL0012 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo11g00031 | - | - | cmax:111500215 | 375.17 |