Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00031 ATGGAGAACAACAATCAAGCCCAATCCTCCCCTTACCCTCCTCCTCCTCCTCCTCCTCAGGCACCCGTCCCGGCCCCTCACTTCCACCACCTCCTCCAGCAGCAGCAGCAGCAGCTTCAGATGTTCTGGTCCTTTCAGCGCCAAGAAATCGAACAGGTTAACGATTTTAAAAACCACCAGCTTCCTTTGGCTCGCATTAAGAAGATCATGAAAGCCGACGAGGACGTGCGTATGATCTCCGCCGAAGCGCCCATTTTGTTCGCCAAGGCCTGCGAGCTCTTCATTCTGGAACTCACTATTAGGTCATGGCTTCACGCGGAGGAGAATAAGAGGCGGACATTGCAGAAGAACGATATTGCGGCGGCCATCACGAGGACCGATATCTTTGATTTCTTAGTTGATATTGTGCCTAGGGATGAAATCAAGGACGAAGCTGGATTGGGAGGCATGGTCGGAGCCACTGCTAGTGGAGTGCCCTACTATTACCCCCCTATGGGTCAACCGGCAGGGGCTCCCGGGGGGATGATGATTGGGAGACCGGCAATGGATCCCATCGGAGTTTACGCTCAGCCGCCGTCACAGGCCTGGCAGTCGGCGTGGCAGCCCTCGGCGGAGGACGGTTCTTACGCCAGTGGAGGCAACAGCGGGCAGGGCAATCTTGATGGTCAGAGGTAG 675 56.0 MENNNQAQSSPYPPPPPPPQAPVPAPHFHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRPAMDPIGVYAQPPSQAWQSAWQPSAEDGSYASGGNSGQGNLDGQR 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 136282 136956 + CmoCh11G000310.1 Cmo11g00031 390650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00031 224 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 223 - -
Cmo11g00031 224 SUPERFAMILY Histone-fold 33 132 IPR009072 GO:0046982
Cmo11g00031 224 Gene3D Histone, subunit A 27 138 IPR009072 GO:0046982
Cmo11g00031 224 Pfam Core histone H2A/H2B/H3/H4 43 123 IPR007125 GO:0003677
Cmo11g00031 224 MobiDBLite consensus disorder prediction 191 224 - -
Cmo11g00031 224 MobiDBLite consensus disorder prediction 1 26 - -
Cmo11g00031 224 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-4 1 223 - -
Cmo11g00031 224 MobiDBLite consensus disorder prediction 188 224 - -
Cmo11g00031 224 MobiDBLite consensus disorder prediction 9 25 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00031 Cmo-Chr11:136282 Cmo11g01160 Cmo-Chr11:6703878 4.64E-69 dispersed
Cmo10g00053 Cmo-Chr10:248351 Cmo11g00031 Cmo-Chr11:136282 5.83E-135 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10505 PF00808 CBFD_NFYB_HMF 2.30E-17 CL0012 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00031 - - cmax:111500215 375.17