Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00038 ATGGTGATGGCGGCAACTAGAGAGGAGAGTCCTAGAAGCCCAGAGGCGAAGGTGGGGATGCAAGTGGAAGATTTATGGGACGTTCAAGAGCCGCAGCTCAGTCCTACTGAGAAGCTTAACGCTTGTTTTGAAAGCATCCCTGTCTCTGCTTTTCCTCCTGCCCCTTTTGATCAAGGCATCCTTCTTATTTTTCCCTTCCAAATCACTTTTGTATTTTCAATTGAGATAAGATCGGACAGCAGTCTAGCTGAAGCTGTTCAAATTTTGGCCCAACATAAGATCCTCAGCGCCCCTGTGGTGGACGTTGATGCACCTGATCATGCTAGTTGGATTGATAGATACATTGGTGTTGTTGAGTTTGCTGGAATTGCTGTTTGGATTCTTCAGCAGTCGGAACCTCCATCCCCCAGAAGTCCCAGTGATGGAAGTGCTGTGGCTGCAGCAGCAAGTGGGGTGATATCTCCTGTTGAACAGCAGGTACTGGGCTCGGAATCAGCTGCAGCAACCTCGGGAAGCTTTTTCGAATGCTTAACTTCTTCTGAATTGTACAAGAGCACACAGGTGCGAGACATCTCGGGATCTTTCCGTTGGGCCCCGTTTCTTGCTTTGCAGACGACGAACTCATTCTTGACCATGCTCTTATTGTTATCAAAGTACAAAATGAAGAGTGTACCAGTGGTGGACTTGGGGGTGGGAAAGATTGAAAACATCATCTCACAATCTGCTGTTATTCACATGTTAGCAGAATGTGCAGGGCTTCAATGGTTTGAACGTTGGGGAACAAAGACTCTCTCGGAGCTCGGTCTTCCCATGATGTCGCCCGCTTCTATTGTCAAGGTGTACGAGGATGAGCCCGTTCTACAAGCATTCAAACTTATGAGGAAGAAGAGGGTTGGAGGTGTCCCTGTTATTGAAAGGGGTGGAAACAAGGCAATGGGCAATATTAGCTTAAGAGATATCCATTTCTTGCTCACTGCACCAGAAATCTACCACGATTACAGATCGATAACAGCGAAAAACTTTCTGACAGCAGTTAGAAGCTACTTAGAGAAGCACGACCAGGTCTCTCCAATGCTGACGAACATGATTACGTGCAAGAAGGACGACACAATAAAGCATCTGATTTTGATGCTCGACTCCAAGAAGATTCACCGCGTGTATGTAGTTAACAGCGATGGTAATCTGCAAGGAGTTATCACTCTTAGAGACATAATCTCGAGGTTAGTCCACGAACCCCACGGCTACTTTGGCGATTTCTTCGATGGTGTTCTGCCATTGCCTCAGGACAGTCGGGTTTGA 1299 46.88 MVMAATREESPRSPEAKVGMQVEDLWDVQEPQLSPTEKLNACFESIPVSAFPPAPFDQGILLIFPFQITFVFSIEIRSDSSLAEAVQILAQHKILSAPVVDVDAPDHASWIDRYIGVVEFAGIAVWILQQSEPPSPRSPSDGSAVAAAASGVISPVEQQVLGSESAAATSGSFFECLTSSELYKSTQVRDISGSFRWAPFLALQTTNSFLTMLLLLSKYKMKSVPVVDLGVGKIENIISQSAVIHMLAECAGLQWFERWGTKTLSELGLPMMSPASIVKVYEDEPVLQAFKLMRKKRVGGVPVIERGGNKAMGNISLRDIHFLLTAPEIYHDYRSITAKNFLTAVRSYLEKHDQVSPMLTNMITCKKDDTIKHLILMLDSKKIHRVYVVNSDGNLQGVITLRDIISRLVHEPHGYFGDFFDGVLPLPQDSRV 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 159719 162276 - CmoCh11G000380.1 Cmo11g00038 390657

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00038 432 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 8 432 - -
Cmo11g00038 432 CDD CBS_pair_SF 277 405 - -
Cmo11g00038 432 SUPERFAMILY CBS-domain pair 74 248 IPR046342 -
Cmo11g00038 432 Pfam CBS domain 358 409 IPR000644 -
Cmo11g00038 432 Pfam CBS domain 272 320 IPR000644 -
Cmo11g00038 432 Gene3D - 258 411 IPR046342 -
Cmo11g00038 432 SMART cbs_1 72 128 IPR000644 -
Cmo11g00038 432 SMART cbs_1 199 248 IPR000644 -
Cmo11g00038 432 SMART cbs_1 361 409 IPR000644 -
Cmo11g00038 432 SMART cbs_1 276 325 IPR000644 -
Cmo11g00038 432 ProSiteProfiles CBS domain profile. 358 416 IPR000644 -
Cmo11g00038 432 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT GAMMA 1-RELATED 8 432 - -
Cmo11g00038 432 SUPERFAMILY CBS-domain pair 263 418 IPR046342 -
Cmo11g00038 432 Gene3D - 71 252 IPR046342 -
Cmo11g00038 432 ProSiteProfiles CBS domain profile. 272 333 IPR000644 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00038 - - - cmax:111495538 771.541
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo10g00062 Cmo11g00038 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01714 Cmo-Chr4:8686405 Cmo11g00038 Cmo-Chr11:159719 1.46E-77 dispersed
Cmo11g00038 Cmo-Chr11:159719 Cmo18g01195 Cmo-Chr18:11970852 6.25E-80 dispersed
Cmo02g00396 Cmo-Chr2:2039142 Cmo11g00038 Cmo-Chr11:159719 1.31E-20 transposed
Cmo10g00062 Cmo-Chr10:285217 Cmo11g00038 Cmo-Chr11:159719 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g117 . . Bda06g00730 . Bpe12g00484 . . . . . Cma10g00066 Cma11g00036 Car10g00054 Car11g00033 . . Cpe04g01613 Bhi02g00681 . . . . . . Cla06g01738 Cam06g1928 . Cco06g1982 Clacu06g1884 . Cre06g2641 . . Cone13ag0216 Cone19ag0205 . . . . . Blo15g00210 . . . . . . . Cmo10g00062 Cmo11g00038 . . . . . . . . . . . . . . . . . . . . Lsi06g01638 Csa01g00060 Chy02g02659 Cme02g02061
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003995 2 1 2 1 2 1 2 1 0 2 1 1 2 2 2 2 0 2 2 1 2 1 1 1 1 0 1 4 2 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g00038 Cmo_Chr11 FPKM 0.0 0.0 0.0 0.116088 0.0 0.0 0.0 0.0 0.120792 0.169685