Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00039 ATGGCGTCCTCCGCTTCTTCCTCGTCTCATGGCGCTTCCAAGTTCCTTGGCGACCTTCCTTCCCGTGGCTACTTTTCGTCTTCCGTCCCTTCCTCAAATCCTGGGAGTATGCGAGTCTATATCTGCCTTCATGATACCTCACCACCAGAAGACCAAGAAATAAAGACAAACCAGCAGAATATACTTATTCGATCTTTAATGCTTAAAAATTCCAGCTCAAAGGATGGAAAGGGAGTAGCTGCAGCCGAATCCTCTCGAAAGAGGGCTGGTGAAAAAATTTCAGATGGCAGAGCAAAGAGGACTGCCCAAGTAAGTTCAGGAAAAGGAGCATCAAACAGTGAAACACCGAGTAAGGATTTCCAGAATTTGACTGTAGAGAGGCTGCGTGCGCTTCTCAAGGCCAGAGGCCTTTCGCTGAAAGGAAAGAAGGATGAATTAATTGCCCGCCTTAGAAGCGCTGATGATGACCACCGTCATCACCAGTCGTCGTCGACATGTCGTCCAGAGTTCCCCAAAAAATTATATGAAACTAAAGCGGCTGTGGCCATTGGGGCCTCCAGTTTTGGACGGCGGACCGTCGTCACGGCCAACCCAGCCAACGTCGAGTACATGCTCAAGACTAATTTTCTTAATTACCCTAAAGGAAAGCCCTTCACTGACATACTCGGCGATCTCCTCGGCTGCGGCATTTTCAACGTCGACGGCGAGTTGTGGTCCACCCAGCGCAAGCTCGCTAGCCATGAATTTTCTGCCAAGTCTTTAAGGGAATTTGTGGTTAAGACGCTTGAAGATGAAGTTCATCTCCGTTTGATTCCGTTGCTCCAGAAAGCTGCCCGGACTAACGCCGCCTTGGATTTGCAAGATGTTCTGGGTAGGCTCGCTTTTGACACCATTTGTAAGATGACTTTAGGAACTGACGAGCAATGTTTGGACCTGTCGCGCCCAGTTCCAGCAATAGTAAATGCATTCGATATGGCTACGGGGATCAGCGCCAAGCGGGCAATAGCGCCAGTCTCTCTGGCGTGGAAGGCTAAGCGGCTGTTCAACATCGGCTCCGAGAAGCGGCTCAAGGAAGCCGTCCAAATGGTCCACTCATGGGTCTCCCACATCATTCGCAACAAAAACCTCGACAACAATAAAGACAGCGATTTATTATCTCGGCTGTTATCCGCCGGCCACGGCGAGGAAGTCGTCCGAGACATGGTCGTCAGCTTCATAATGGCTGGCCGGGACACCACCTCCGCCGCCATGACGTGGCTCTTCTGGTTGCTGACAAAGCATCCCAAAGTGGAACAGACTCTTATGGACGAAGTGGCTTCCTTGTCCAACAATTACCGAACGGCGTCGTTGGGTTACGGGTACGAAGAATTAAAGGACATGAAGTATTTGAAGGCGTGTTTGTGCGAGTCCATGCGGCTTTACCCACCGGTGGCTTGGGATTCAAAGCACGCAGCGGCGGCGGACATTCTGCCGGACGGAACTCCGGTGAGGAAAGGGGACAGAGTGACATATTTTCCGTACGGAATGGGGCGGATGGAGGAGCTGTGGGGTCCGGAGCGGGAGGAGTTCAAACCGGAACGGTGGTTTGAAAAGGGGGAGGTGAAAGCGGTGAGTCCGTTTAAGTTCCCGGTGTTCCAAGGCGGACCGAGAATGTGCTTGGGAAAGGAAATGGCGTTCATTCAGATGAAATACGTGGTAGCCACGGTTTTGAAGCGGTTTGAGTTTAGAGCGGTGAGTGAAAGTGAACCGGTTTTTGTGCCGTTGTTGACAGCTCACATGGCAGGTGGATTACAGGTTTATGTTAGAGAAAGAAGAGGACAAAAGTGA 1827 51.12 MASSASSSSHGASKFLGDLPSRGYFSSSVPSSNPGSMRVYICLHDTSPPEDQEIKTNQQNILIRSLMLKNSSSKDGKGVAAAESSRKRAGEKISDGRAKRTAQVSSGKGASNSETPSKDFQNLTVERLRALLKARGLSLKGKKDELIARLRSADDDHRHHQSSSTCRPEFPKKLYETKAAVAIGASSFGRRTVVTANPANVEYMLKTNFLNYPKGKPFTDILGDLLGCGIFNVDGELWSTQRKLASHEFSAKSLREFVVKTLEDEVHLRLIPLLQKAARTNAALDLQDVLGRLAFDTICKMTLGTDEQCLDLSRPVPAIVNAFDMATGISAKRAIAPVSLAWKAKRLFNIGSEKRLKEAVQMVHSWVSHIIRNKNLDNNKDSDLLSRLLSAGHGEEVVRDMVVSFIMAGRDTTSAAMTWLFWLLTKHPKVEQTLMDEVASLSNNYRTASLGYGYEELKDMKYLKACLCESMRLYPPVAWDSKHAAAADILPDGTPVRKGDRVTYFPYGMGRMEELWGPEREEFKPERWFEKGEVKAVSPFKFPVFQGGPRMCLGKEMAFIQMKYVVATVLKRFEFRAVSESEPVFVPLLTAHMAGGLQVYVRERRGQK 608
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 163670 170045 + CmoCh11G000390.1 Cmo11g00039 390658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00039 608 MobiDBLite consensus disorder prediction 72 120 - -
Cmo11g00039 608 PANTHER CYTOCHROME P450 94B3 190 602 - -
Cmo11g00039 608 Pfam Det1 complexing ubiquitin ligase 14 69 IPR018276 -
Cmo11g00039 608 Gene3D Cytochrome P450 170 608 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo11g00039 608 Pfam Cytochrome P450 190 583 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo11g00039 608 SUPERFAMILY SAP domain 117 152 IPR036361 -
Cmo11g00039 608 Pfam SAP domain 120 153 IPR003034 -
Cmo11g00039 608 MobiDBLite consensus disorder prediction 99 120 - -
Cmo11g00039 608 PRINTS E-class P450 group IV signature 460 476 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo11g00039 608 PRINTS E-class P450 group IV signature 494 508 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo11g00039 608 PRINTS E-class P450 group IV signature 399 425 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo11g00039 608 PRINTS E-class P450 group IV signature 552 570 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo11g00039 608 PRINTS E-class P450 group IV signature 511 529 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo11g00039 608 PANTHER CYTOCHROME P450 190 602 - -
Cmo11g00039 608 ProSiteProfiles SAP motif profile. 120 154 IPR003034 -
Cmo11g00039 608 SMART sap_9 120 154 IPR003034 -
Cmo11g00039 608 Gene3D SAP domain 117 162 IPR036361 -
Cmo11g00039 608 PRINTS P450 superfamily signature 408 425 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo11g00039 608 PRINTS P450 superfamily signature 465 476 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo11g00039 608 PRINTS P450 superfamily signature 543 552 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo11g00039 608 PRINTS P450 superfamily signature 552 563 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo11g00039 608 MobiDBLite consensus disorder prediction 80 98 - -
Cmo11g00039 608 SUPERFAMILY Cytochrome P450 187 604 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo11g00039 608 MobiDBLite consensus disorder prediction 1 39 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo10g00063 Cmo11g00039 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00039 Cmo-Chr11:163670 Cmo13g00317 Cmo-Chr13:3460255 3.65E-133 dispersed
Cmo19g00499 Cmo-Chr19:5933251 Cmo11g00039 Cmo-Chr11:163670 5.17E-20 transposed
Cmo10g00063 Cmo-Chr10:287927 Cmo11g00039 Cmo-Chr11:163670 0 wgd
Cmo11g00039 Cmo-Chr11:163670 Cmo11g01617 Cmo-Chr11:11555442 1.00E-60 wgd
Cmo11g00039 Cmo-Chr11:163670 Cmo14g00730 Cmo-Chr14:3737519 6.69E-133 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00039 K20665 - csv:101202989 684.485