Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00043 ATGACAAGCCCGATATCCGTGAGAGTCGAAGAAAAACCTTTAGCCCGCTATCTCCCTCCATTTCCCGCTCCGAGGCTCTGCAGCTACCATTTCGAGTTCACTCCGGAACCTCCCCAGCATATGCAATTGGAGTTTTTGGGCGGTTCTTCCGTTCTCAGGTCGCCACATTTGGGTCCTTACAGGCACACGATGGCAGCCTTTGGTGCTCTTTCACTATGTCCCTGCAGCCCCCTGCCGCGCCCACGTACCATTTATTGTTACAGTGGTACTCCTAAAGTTTTAGGCAATAATGTCTCTAGAGTACACCGCAAAAGACCGGGAAGATTAGAAGGTGCTAGAAAAAGCATGGAAGATTCTGTTAAACGCAAGATGGAACAGTTTTATGAAGGTTCAGATGGTCCGCCCCTCCGTGTTCTTCCAATTGGCGGCCTTGGTGAAATTGGGATGAATTGTATGCTTGTTGGGAATTATGACCGTTACATTTTGATTGATGCTGGTGTCATGTTTCCTGACCACGATGAGCTTGGTGTTCAGAAAATTATACCCGATACCACATTCATCAGAAGATGGAGTCACAAAATTGAAGCTGTTGTCATTACACATGGTCATGAAGATCACATTGGTGCGTTGCCATGGGTAATTCCAGCTTTGGATTCCCATACACCAATTTACGCTTCATCCTTTACAGTGGAGGTATATCACTACTTCAGCATATTGAAATTTTCTATCATTCTAAGTATTTGCGTTTTTAACATCAAATGCAACTCTTCTTATTTTTTAAATTATTACACTCCTACTAGGAGATGGGACATTGTCAATAGTAATGATTTTAAACTAAAATGTAAAGATCAAGAGTTCAATCCTGTTTTATCTCTAGTTTTTTCATCAACGTGGTGCTTGCTTGTCATTTGTGGCATGACTGTTCTTCCTTGGCAGCTAATAAAAAAGCGTCTGAAGGAAAATGGGATTTTTGTTCCTTCTAGACTTAAGGTGTTTAAGATGAGAAAGAGATTCACAGCTGGGCCATTTGAAATAGAGCCAATTAGGGTTACCCATTCCATTCCTGATTGTTGTGGATTGGTTCTTCGATGTGCTGATGGTACAATTCTTCATACTGGAGACTGGAAGATTGATGAGTCCCCATTGGATGGTAAAGTCTTTGATCGAGAAACTTTGGAAGAATTATCAAAAGAAGGAGTTACTCTTATGATGAGTGACTCAACAAATGTACTATCTCCTGGAAGGACGATTAGTGAGTCTGTGGTGGCAGATGCTCTTTTAAGACGTATCTCTGCAGCTAAAGGAAGGGTCATCACGACTCAATTTGCTTCAAATATACACCGCCTTGGAAGTGTGAAAGCAGCCGCTGATTTAACTGGTAGAAAGTTGGTATTTGTTGGGATGTCTTTAAGGACATATCTGGAGGCAGCCTGGAAGGATGGAAAGGCACCAATTGACCCATCGACCTTGTGTGCGTATTCATCTAATTTTAACAATTCTCATCCTACAACTGATAAGGTAAAAGTGGAGGACATTGAAGCCTATGCACCAAAAGATTTATTGATTGTCACAACTGGCTCACAAGCAGAACCACGTGCTGCCCTAAATCTTGCATCGTATGGAAGTAGTCACTCTCTCAAACTGAGCAAGGAAGATATGATTTTGTATTCGGCCAAGACTCATATTCAACCCACAATGTCAAGTTGTCTCATCAGTTGTTTTGGATTTACAAAGATTTTAGTTATTCCTGGTAATGAATCTAGAGTGATGAAAATGTTGAACCGTATATCAGAGATTGGATCAAATATAATCATGGGCAAGAATGAGTTGCTGCACACATCTGGTCATGCATATCGTGGAGAATTGGAGGAAATACTACAAATTGTTAAACCGCAGCATTTTTTACCCATTCATGGAGAGCTTTTATTCCTTAAGGAGCATGAGCTGCTGGGCCGGTCGACAGGCATCCGACACACAACTTTGAAGTATAGTGATGGTGATAAAGCATTTGGATCCTCATCTGAGCTCTTTGTTGACGAGAGACTAAAGATTGCAACAGATGGCATAATAGTGGTCAGTATGGAAATCTTGCGACCTCAAAGTATAGACGGTTTAAATGAGACTGTCATCAAAGGAAAACTAAGAATCACTACTCGATGCTTATGGCTCGACAAGGGGAAGCTTTTAGATGCACTTCACAAAGCCGCTCATGCAGCACTTTCAAGTTGCCCCGTAAATTGTCCTCTAGCTCACATGGAAAGAACTGTGTCTGAACTTTTGAAGAAGATGGTTAGAAAATACAGTGGTAAGAGGCCTGAAGTCATAGTCTTGGCTGTGGAGAACCCTGGAGGAGTTCTATCCGAACAGCTTGGTAGAAGGCTTTCAGGGAAGTCCGATACTAGATTCGGGATGTCAGCACTGAGAAAAGCAGTTGTTGGACAGCCAACTAAGTGCCACTTAAACGGCATAAGACCAGATGGAAATGACGATTTGCATTCTGAGGATAACTCAAGTCAGGAGTCCCAAGGTTATTATATTGAACCTGGAAGCCTACTTCCTGAAGAAGACTACAATTCCTCAAACTCCAACTTGACAGAGACACAATCCTCCGATACCGAGGACATGGAAGATTTCTGGACACCGTTTATCACGCCATCCTCTCCTGTTAATGAATTGGTAAAGGAGAATGAGGGTTCTGTTCAACCATCAAAAAATACGCTGGAGATTTCAAACGGACTGAAAACATCAAATTCTTCGGAGAAGCCTTTGAGGCCTTTGAAGCCTGTTAAAAGCAATAAATGGAAACCTGAGGAGATGAAGAGACTTATAAAATTACGTGGCCAATTGCATGCCAGGTTTCAAGTTGCCAAGGGACGAATGGCATTATGGGAAGAGATATCCACATGTATGTTGGGTGATGGAATGAATCGGAGTCCAGGACAGTGCAAATCCATGTGGGCATCTCTGGTTCAGAAATATGAGCAGGATAGCAAACGTGAAAAGACAATCAAGAAAAGTTGGCCATACTTGGAGGAAATGGACGCCATATTGTCTGATTCAGAGGCAGTAGCATCAAAATAA 3081 42.23 MTSPISVRVEEKPLARYLPPFPAPRLCSYHFEFTPEPPQHMQLEFLGGSSVLRSPHLGPYRHTMAAFGALSLCPCSPLPRPRTIYCYSGTPKVLGNNVSRVHRKRPGRLEGARKSMEDSVKRKMEQFYEGSDGPPLRVLPIGGLGEIGMNCMLVGNYDRYILIDAGVMFPDHDELGVQKIIPDTTFIRRWSHKIEAVVITHGHEDHIGALPWVIPALDSHTPIYASSFTVEVYHYFSILKFSIILSICVFNIKCNSSYFLNYYTPTRRWDIVNSNDFKLKCKDQEFNPVLSLVFSSTWCLLVICGMTVLPWQLIKKRLKENGIFVPSRLKVFKMRKRFTAGPFEIEPIRVTHSIPDCCGLVLRCADGTILHTGDWKIDESPLDGKVFDRETLEELSKEGVTLMMSDSTNVLSPGRTISESVVADALLRRISAAKGRVITTQFASNIHRLGSVKAAADLTGRKLVFVGMSLRTYLEAAWKDGKAPIDPSTLCAYSSNFNNSHPTTDKVKVEDIEAYAPKDLLIVTTGSQAEPRAALNLASYGSSHSLKLSKEDMILYSAKTHIQPTMSSCLISCFGFTKILVIPGNESRVMKMLNRISEIGSNIIMGKNELLHTSGHAYRGELEEILQIVKPQHFLPIHGELLFLKEHELLGRSTGIRHTTLKYSDGDKAFGSSSELFVDERLKIATDGIIVVSMEILRPQSIDGLNETVIKGKLRITTRCLWLDKGKLLDALHKAAHAALSSCPVNCPLAHMERTVSELLKKMVRKYSGKRPEVIVLAVENPGGVLSEQLGRRLSGKSDTRFGMSALRKAVVGQPTKCHLNGIRPDGNDDLHSEDNSSQESQGYYIEPGSLLPEEDYNSSNSNLTETQSSDTEDMEDFWTPFITPSSPVNELVKENEGSVQPSKNTLEISNGLKTSNSSEKPLRPLKPVKSNKWKPEEMKRLIKLRGQLHARFQVAKGRMALWEEISTCMLGDGMNRSPGQCKSMWASLVQKYEQDSKREKTIKKSWPYLEEMDAILSDSEAVASK 1026
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 177786 189046 - CmoCh11G000430.1 Cmo11g00043 390662

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00043 1026 SMART sant 930 992 IPR001005 -
Cmo11g00043 1026 SUPERFAMILY Metallo-hydrolase/oxidoreductase 136 660 IPR036866 -
Cmo11g00043 1026 Gene3D - 934 995 - -
Cmo11g00043 1026 MobiDBLite consensus disorder prediction 854 869 - -
Cmo11g00043 1026 Gene3D - 297 422 IPR036866 -
Cmo11g00043 1026 Gene3D - 121 248 IPR036866 -
Cmo11g00043 1026 Pfam Myb/SANT-like DNA-binding domain 932 1016 IPR044822 -
Cmo11g00043 1026 ProSiteProfiles Myb-like domain profile. 926 990 IPR001005 -
Cmo11g00043 1026 PANTHER RIBONUCLEASE J 307 560 - -
Cmo11g00043 1026 PANTHER RIBONUCLEASE J 581 661 - -
Cmo11g00043 1026 PANTHER RIBONUCLEASE J 661 1026 - -
Cmo11g00043 1026 PANTHER RIBONUCLEASE J 56 232 - -
Cmo11g00043 1026 MobiDBLite consensus disorder prediction 817 930 - -
Cmo11g00043 1026 CDD GT1 932 994 - -
Cmo11g00043 1026 Gene3D - 423 605 IPR042173 -
Cmo11g00043 1026 MobiDBLite consensus disorder prediction 883 922 - -
Cmo11g00043 1026 SMART Lactamase_B_5a 148 426 IPR001279 -
Cmo11g00043 1026 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 608 648 IPR011108 -
Cmo11g00043 1026 Pfam Metallo-beta-lactamase superfamily 150 218 IPR001279 -
Cmo11g00043 1026 CDD RNaseJ_MBL-fold 139 407 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00043 - - - cpep:111780336 1220.68
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo10g00066 Cmo11g00043 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00043 Cmo-Chr11:177786 Cmo02g00975 Cmo-Chr2:6010106 2.88E-10 dispersed
Cmo10g00066 Cmo-Chr10:301666 Cmo11g00043 Cmo-Chr11:177786 2.91E-113 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g135 . . . . . . . . . . Cma10g00071 Cma11g00042 Car10g00058 Car11g00038 Sed08g0040 . Cpe04g01607 Bhi02g00533 Tan09g2359 Cmetu02g0049 . Hepe09g0058 . . Cla06g01733 Cam06g1924 Cec06g1974 Cco06g1978 Clacu06g1880 Cmu06g1822 Cre06g2637 . . . . . . . . . . . . . . . . . Cmo10g00066 Cmo11g00043 . . . . . . . . . . . . . . . . . . . . Lsi06g01633 Csa01g00066 Chy02g02654 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006250 1 3 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 1 3 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10507 PF13837 Myb_DNA-bind_4 6.50E-16 CL0123 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g00043 Cmo_Chr11 FPKM 0.0 0.0 1.528257 1.426904 6.886883 6.636228 8.757443 1.558583 1.782489 1.602825