Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00046 ATGGCGAAGCCAAATCGTGTAACCAATTCTTCTGTAGCCTCTGATTTCATCGACTTCTTGAACGCTTCCCCGACTGCTTTCCACGCCGTTGAGGAGGCAAAGAAGCGGCTGGTAGAAGTGGGATATGAACAACTCTCTGAGACAGAGGATTGGAAATTAGAAGCCGGCAAGAAGTACTTCTTCACCAGAAATCATTCCGCCATCATCGCTTTCGCGATCGGTAAAAAATACGTTGCTGGGAATGCATTTCATATTGTTGGTGCTCATACAGATAGCCCTTGTTTGAAATTGAAGCCTATAAGCAAGATTACGAAGGGTGGATTTCTGGAAGTTGGTGTTCAAATTTATGGGGGTGGGTTGTGGCACACATGGTTTGACCGGGATTTAACAGTTGCAGGAAGGGTGATTCTGAGGGAAGAGAAAAATGGTTCTGTTTCATATGTTCCTCGACTTGTTCGAATTTTGGAGCCCATATTGAGAATCCCCACATTAGCAATTCACTTGGACAGGGATGCAGTTGCATTTGCGGTGAACACAGAGACCCAACTTCTCCCAATTTTGGCCACGACTATTAAGGGGGAATTGAATAAAGTTGTTTACAAAAATGATGCCCAAAATGGTGGAGAGTATACAGATCAGAAGTCAACTCCTAGTAGCTCAAAGCATCACTTGCTTCTGTTACAGATACTTGCGGAGCAACTTGGCTGTGAACCAGATGACATATTTGATTTTGACTTGCAAGTATGTGATGCTCAACCAAGTGCGATTGGTGGTGCCAAGAGGGAATTCATATTCTCTGGAAGGCTCGATAATTTATGCATGACATTTTGCTCTTTGAAGGCATTGATTGACAGTACATCTTCTGAAAGTAGCCTTGAGAATGAGGCTGGTATCAGAATGGTGGCCCTGTTTGACAACGAGGAGGTTGGATCTAATTCAGCCCAGGGGGCTGGGTCTCCAGCAATGCATGATGCTTTATCACGAATCACCACTTCCTTCAGCCCATTACCTTCGCTGGTTGAAAAAGCTATCCAGAAAAGTTTCCTGGTCTCTGCCGACATGGCGCATGCATTACACCCAAATTATATGGAAAAGTATGAAGAAAATCATCGGCCCAAGTTCCATGGAGGACTGGTCATCAAGATGAATGCAAATAATAAATACGCAACTAATGCAGTCACTGCAACCATATTCCGGGAGTTCGCTTTAAAACATAACCTTCCTGTCCAGGATTTTGTGGTCCGCAATGACATGGCTTGTGGTACCACCATTGGCCCCATCCTTGCAAGTGGCTTAGGCATACGAACAGTTGATGTGGGAGCACCGCAGCTATCGATGCACAGTATTCGAGAAGTTTGTGGTACAGACGATGTTGATTACTCGTATCTGCATTTCAAGGCTTATTATGAAGAGTTCTCTACTCTTCCTATGATCCCAGTTGATATCTAG 1449 44.38 MAKPNRVTNSSVASDFIDFLNASPTAFHAVEEAKKRLVEVGYEQLSETEDWKLEAGKKYFFTRNHSAIIAFAIGKKYVAGNAFHIVGAHTDSPCLKLKPISKITKGGFLEVGVQIYGGGLWHTWFDRDLTVAGRVILREEKNGSVSYVPRLVRILEPILRIPTLAIHLDRDAVAFAVNTETQLLPILATTIKGELNKVVYKNDAQNGGEYTDQKSTPSSSKHHLLLLQILAEQLGCEPDDIFDFDLQVCDAQPSAIGGAKREFIFSGRLDNLCMTFCSLKALIDSTSSESSLENEAGIRMVALFDNEEVGSNSAQGAGSPAMHDALSRITTSFSPLPSLVEKAIQKSFLVSADMAHALHPNYMEKYEENHRPKFHGGLVIKMNANNKYATNAVTATIFREFALKHNLPVQDFVVRNDMACGTTIGPILASGLGIRTVDVGAPQLSMHSIREVCGTDDVDYSYLHFKAYYEEFSTLPMIPVDI 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 201401 205317 - CmoCh11G000460.1 Cmo11g00046 390665

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00046 482 Gene3D Aminopeptidase i, Domain 2 94 253 IPR023358 GO:0004177
Cmo11g00046 482 PRINTS Aminopeptidase I zinc metalloprotease (M18) signature 83 99 IPR001948 GO:0004177|GO:0006508|GO:0008270
Cmo11g00046 482 PRINTS Aminopeptidase I zinc metalloprotease (M18) signature 116 136 IPR001948 GO:0004177|GO:0006508|GO:0008270
Cmo11g00046 482 PRINTS Aminopeptidase I zinc metalloprotease (M18) signature 155 172 IPR001948 GO:0004177|GO:0006508|GO:0008270
Cmo11g00046 482 PRINTS Aminopeptidase I zinc metalloprotease (M18) signature 304 322 IPR001948 GO:0004177|GO:0006508|GO:0008270
Cmo11g00046 482 PRINTS Aminopeptidase I zinc metalloprotease (M18) signature 347 363 IPR001948 GO:0004177|GO:0006508|GO:0008270
Cmo11g00046 482 PRINTS Aminopeptidase I zinc metalloprotease (M18) signature 436 451 IPR001948 GO:0004177|GO:0006508|GO:0008270
Cmo11g00046 482 Pfam Aminopeptidase I zinc metalloprotease (M18) 19 469 IPR001948 GO:0004177|GO:0006508|GO:0008270
Cmo11g00046 482 Gene3D Zn peptidases 15 469 - -
Cmo11g00046 482 PANTHER ASPARTYL AMINOPEPTIDASE 9 475 IPR001948 GO:0004177|GO:0006508|GO:0008270
Cmo11g00046 482 SUPERFAMILY Aminopeptidase/glucanase lid domain 95 247 - -
Cmo11g00046 482 PANTHER ASPARTYL AMINOPEPTIDASE 9 475 - -
Cmo11g00046 482 SUPERFAMILY Zn-dependent exopeptidases 11 470 - -
Cmo11g00046 482 CDD M18_DAP 13 470 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00046 K01267 DNPEP; aspartyl aminopeptidase [EC:3.4.11.21] - csv:101216946 830.861
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00046 Cmo-Chr11:201401 Cmo18g00947 Cmo-Chr18:10596338 7.75E-23 dispersed
Cmo11g00045 Cmo-Chr11:195790 Cmo11g00046 Cmo-Chr11:201401 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g144 . Blo16g00264 . . . . . . . . . Cma11g00045 . Car11g00040 . . Cpe04g01605 Bhi02g00539 . . . Hepe09g0063 . . Cla06g01730 Cam06g1921 Cec06g1971 Cco06g1975 Clacu06g1877 Cmu06g1819 Cre06g2634 . Cone16ag0029 . . . . . . . . . . . Bpe15g00210 Bma03g01265 . . . Cmo11g00046 . . . . . . . . . . . . . . . . . . . . Lsi06g01628 Csa01g00070 Chy02g02650 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003516 0 2 1 1 1 2 1 2 2 2 1 2 1 1 1 2 2 2 1 2 2 1 2 2 1 2 2 4 1 1 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g00046 Cmo_Chr11 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.327964