Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00050 ATGGCACCGACTGTTCCTATTGAGTTTGCTGGACAGAAGGAATCGAGAAAGTACTCACTTTCACAGGTAATGGGGAAATCGAGGAAATATTCCAAAGGTCTTTCTTTTGGTTTTGTTCCAGATTACCGACATGCTGTGGAAACTGTTGGCGAATCAGAAGGGTTAGGGAGCTCTGGACGAATGGATACTGGAATCTCATCTCTAGATGATCCACGGGCCTTCAAGAGGAAGCGTGTTAGTATGAATGCAAATGGTTATGATTGTTTCGGTGCTCCTCTTCAAGTTTTTTCTATATCATCATTGTCTCGATCTGAAAGGAAAGGTTTAGAGATAAGGTTAAAGTTAGAACTTGAGCAGGTCCGAGTTCTGCAAAAGAAAGCTTCTGACGTTGGTTTGAGTTTGGCTGTTTCATCGTCGAGTAATATTCAGAGTTATAGTGATCAGCACAGGGGAGCTCCTCCAGAGACTTCTAATAGGTTGTCCGAGGTATCGGTTCCTCCTGCTAAAAAGCTAGTGCCCTCTGGGCGCAATGGCCCTTCAGCTGTAAGAAGCTCATCTGGGCGGTTTGAGTCGGTTAAACCAGCTGTTGTATCTGCTTCCTCGACAGCATTGTTATTGAAACAATGTGAACAGCTGCTGCCTCGCTTGATGTCGCATCAATTTGGTTGGGTTTTTAACACCCCAGTTGATGTGGTCAAGTTGAATATTCCAGATTATTTCACTGTTATAAAGCATCCAATGGATCTGGGCACTGTGAAGTCGAAGATTACTGCAGGAGAATACACACATCCATTGGATTTTGCTGCAGATGTTCGACTTACTTTTTCAAATGCGATGACTTACAACCCTCCCGGGAATGACGTCCATGTCATGGCTAAGACCCTAAGTAAATATTTTGAAGTTAGATGGAAAACTATAGAGAAGAAGCTCCCTGTAACAACTGAAGAACAGCGTCAAGTATCTTCAGCCACGATTGTTCATAAGGAAGCTGAAAGTACTCTGCCCGTGTCACGTTCAAAAAAGACAAAAGTCCCTACTAATAGCCCTGATATTCAGCCAAACAGTGTGTCAAAAATCATGACTGACCAGGAGAAGCATAAACTGAGTGTGGAGTTGGAGGCGTTGCTGGGAGAATTGCCTGAAAGCATCATTGATTTCCTAAAGGAGCACAGTTCTAATCCTCTAGCGGGTGAGGAGGAGATTGAAATTGATATTGATACTCTTAGTGATGATACCTTGTTTGCATTGAAGAAGAAATTGGACGACTATATAATGGAAAAGCAGAAACGCACAACGACTGAACCTTGTGTAGTGGAGCAGCTTCGCAATGAATCAGGATTGAGCAATTCATCGATGCCACCCTGTAGAGGAAATGGTCGGATTGATGACGATGTAGACATTGTTGGTGGAAGTGACCCTCCTGTTTCAAGCTATCCTCCAATAGAGATAGAGAAAGATACAGTCCATAGAGATAGTAAATGCAGTCGTTCCAGTAGCTCGAGTAGTGAATCAGGTTCTTCATCAAGTGATTCTGGCTCAGATAGTTTATCGGCGAGTGAATCTAATGCTGCTAAAGCTTTAGATAATGACGTGGCTCCAAAGGAAATTTTGTCTTCTGAAACAAATGTGGATCAGAAGCAATATGAAGTTGGTGATTTAGAAATTGGAAATTTTGAAGAAAATGGAATTGGTCTAGTTGAGCAATCTGCTCAGGGCAATACAAACACTAATGACACGGATAGCTACCAAGAGGAGGGGGAGGGTGCTCCATCTAAGAGGCAAGTCTCCCCTGACAGGCTATACCGTGCAGCTTTATTGAGAAACCGTTTTGCCGACACGATACTGAAAGCTCGAGAAAAGGCACTTGAAAAGGGTGACAAGCGGGATCCTGAAAAAGTGCGAATGGAGAGGGAGGAACTTGAAAGACAGAAAAGAGAAGAAAAAGCCCGGTTGCAAGCAGAGGCCAAAGCTGCAGAGGATGCTCACAGGAAGGCAGAAGCAGAAGCTGCGGCTGAAGCAAAGAAGAAAAGGGAGCTGGATAGAGAAGCTGCACGTCAGGCCTTACTTAAGATGGAGAGGACTGTTGATATTAATGAGAACAGTCAATTCATGGAGGATCTAGAAATGCTTAGGGCTTCGAACGACGAGCAGCTACCAAACTTCATAGAGAAGTCAAGCCCAGAATATTCCCAGAATGGATATGGCAGTTTCAAGCTTAAAGGTTGTAATCCCTTGGAACAACTTGGCTTGTACATGAAGGTGGATGATGAAGAGGAAGAGGATGAAAGTGAACCACCACCACCCCAGAGTGTTAACAAGCCAGCAAATGATGTTGAAGACGACAATCACAGGCAGCCTTGTGATATAGTCTTCAAAGATCCATTAATAGCCACTGTGCTCCATGACTTTTCCTTGCCTTCAAAACGTTAA 2430 43.7 MAPTVPIEFAGQKESRKYSLSQVMGKSRKYSKGLSFGFVPDYRHAVETVGESEGLGSSGRMDTGISSLDDPRAFKRKRVSMNANGYDCFGAPLQVFSISSLSRSERKGLEIRLKLELEQVRVLQKKASDVGLSLAVSSSSNIQSYSDQHRGAPPETSNRLSEVSVPPAKKLVPSGRNGPSAVRSSSGRFESVKPAVVSASSTALLLKQCEQLLPRLMSHQFGWVFNTPVDVVKLNIPDYFTVIKHPMDLGTVKSKITAGEYTHPLDFAADVRLTFSNAMTYNPPGNDVHVMAKTLSKYFEVRWKTIEKKLPVTTEEQRQVSSATIVHKEAESTLPVSRSKKTKVPTNSPDIQPNSVSKIMTDQEKHKLSVELEALLGELPESIIDFLKEHSSNPLAGEEEIEIDIDTLSDDTLFALKKKLDDYIMEKQKRTTTEPCVVEQLRNESGLSNSSMPPCRGNGRIDDDVDIVGGSDPPVSSYPPIEIEKDTVHRDSKCSRSSSSSSESGSSSSDSGSDSLSASESNAAKALDNDVAPKEILSSETNVDQKQYEVGDLEIGNFEENGIGLVEQSAQGNTNTNDTDSYQEEGEGAPSKRQVSPDRLYRAALLRNRFADTILKAREKALEKGDKRDPEKVRMEREELERQKREEKARLQAEAKAAEDAHRKAEAEAAAEAKKKRELDREAARQALLKMERTVDINENSQFMEDLEMLRASNDEQLPNFIEKSSPEYSQNGYGSFKLKGCNPLEQLGLYMKVDDEEEEDESEPPPPQSVNKPANDVEDDNHRQPCDIVFKDPLIATVLHDFSLPSKR 809
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 209826 215281 + CmoCh11G000500.1 Cmo11g00050 390669

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00050 809 MobiDBLite consensus disorder prediction 620 681 - -
Cmo11g00050 809 MobiDBLite consensus disorder prediction 143 163 - -
Cmo11g00050 809 PRINTS Bromodomain signature 252 270 IPR001487 GO:0005515
Cmo11g00050 809 PRINTS Bromodomain signature 236 252 IPR001487 GO:0005515
Cmo11g00050 809 PRINTS Bromodomain signature 220 233 IPR001487 GO:0005515
Cmo11g00050 809 PRINTS Bromodomain signature 270 289 IPR001487 GO:0005515
Cmo11g00050 809 Gene3D - 191 324 IPR036427 GO:0005515
Cmo11g00050 809 SMART bromo_6 198 308 IPR001487 GO:0005515
Cmo11g00050 809 MobiDBLite consensus disorder prediction 143 186 - -
Cmo11g00050 809 PANTHER TRANSCRIPTION FACTOR GTE8 25 779 - -
Cmo11g00050 809 SUPERFAMILY Bromodomain 193 311 IPR036427 GO:0005515
Cmo11g00050 809 Coils Coil 637 682 - -
Cmo11g00050 809 MobiDBLite consensus disorder prediction 337 354 - -
Cmo11g00050 809 ProSiteProfiles NET domain profile. 350 431 IPR027353 -
Cmo11g00050 809 Pfam Bromodomain 209 293 IPR001487 GO:0005515
Cmo11g00050 809 PANTHER TRANSCRIPTION FACTOR GTE10 25 779 - -
Cmo11g00050 809 Gene3D - 355 431 IPR038336 -
Cmo11g00050 809 Pfam Bromodomain extra-terminal - transcription regulation 360 420 IPR027353 -
Cmo11g00050 809 MobiDBLite consensus disorder prediction 442 597 - -
Cmo11g00050 809 MobiDBLite consensus disorder prediction 564 584 - -
Cmo11g00050 809 MobiDBLite consensus disorder prediction 751 787 - -
Cmo11g00050 809 MobiDBLite consensus disorder prediction 494 524 - -
Cmo11g00050 809 ProSiteProfiles Bromodomain profile. 217 289 IPR001487 GO:0005515
Cmo11g00050 809 MobiDBLite consensus disorder prediction 331 354 - -
Cmo11g00050 809 CDD Bromo_plant1 205 303 IPR037377 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00050 - - - csv:101217420 1165.21
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo10g00071 Cmo11g00050 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00050 Cmo-Chr11:209826 Cmo11g01450 Cmo-Chr11:10203283 1.44E-52 dispersed
Cmo10g00071 Cmo-Chr10:328504 Cmo11g00050 Cmo-Chr11:209826 0 wgd
Cmo11g00050 Cmo-Chr11:209826 Cmo11g01635 Cmo-Chr11:11627479 0 wgd
Cmo11g00050 Cmo-Chr11:209826 Cmo14g00719 Cmo-Chr14:3693032 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g154 . . Bda06g00738 . . . . Bma12g01074 . . . Cma11g00049 Car10g00063 Car11g00042 . . Cpe04g01603 Bhi02g00543 . . . Hepe09g0065 . . Cla06g01728 Cam06g1918 Cec06g1968 Cco06g1972 Clacu06g1874 Cmu06g1816 Cre06g2631 . . Cone13ag0209 Cone19ag0196 . . . . . . . . Bpe07g00881 . . . . Cmo10g00071 Cmo11g00050 . . . . . . . . . . . . . . . . . . . . Lsi06g01625 Csa01g00073 Chy02g02647 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003560 2 5 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g00050 Cmo_Chr11 FPKM 19.400173 19.849354 24.353836 24.386847 32.566887 31.081825 34.914162 44.604469 40.228432 45.291344