Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00060 ATGGGTGGGGTTACTTCTTCCATGGCTGCCAAATTCGCCTTCTTCCCTCCCAACCCACCCTCTTACAAGCTCCTCAAAGACCAACCCACTGGCCTTCTTCTCCTGGACCCTTTTCCCCACCGCGAAAATGTCGATGTCTGGAAGCTTCCCACTCGCAAAGGCACTGAGATCGTCGCTGTTTACATCCGCTACCCTATGGCTACTTCTACGCTTCTTTATTCCCATGGAAACGCCGCCGATGTTGGCCAGATGTACGAGCTTTTCATCGAGCTTAGCATCCATTTGCGCGTTAATCTTCTCGGGTACGATTATTCGGGATACGGGCAGTCTACTGGAAAGCCAAGCGAACACAATACTTATGCAGATATTGAAGCTGCATATAAGTGTCTTGAGGAGAAATATGGTGCTAAGCAAGAGGAAATAATCCTTTATGGTCAATCCGTGGGAAGTGGCCCAACTTTAGACCTTGCTGTACGATTGCCCCGACTACGAGCAGTCGTTCTGCATAGTCCTATACTATCGGGATTAAGAGTCATGTATCCAGTGAAGCGCACATACTGGTTTGACATCTATAAGAATATTGATAAAATACCATATGTTAAGTGCCCTGTGCTGGTAATTCATGGAACATCCGACGACGTCGTTGATTTCTCTCACGGTAAACATCTCTGGGAGCTATGTCAAGAGAAATATGAACCCTTATGGCTCAAAGGGGGAAACCATTGTGATCTTGAACTCTTCCCTGAATACATCAGGCACCTCAAGAAATTCGTATCCACCGTTGAGAGATCGCCCTCACGAAGGAACGGTTCAAGGAAAAGCACAGACCGAATCGAGCAATCAAGAAGGAGCACAGATTGTTTCGAGGCCCCGAGAAGGAGCTCAGACAGGCGAGAGAAACCAAGGAAAAGCGTCGATAGGCTAGACAAATCAAGACCTCAAGGATACAAGTTTGACAACATTGAGAAGCTAGAGAAGCTAAAGATCTCAATTGACCAAGTAGAGAGATCAAGGAGAAGTGTGGAATACTACGAGAAACCGAGGAGAAGCATCGACCAACAGTTGGAAAGAGGTCGAAAGAGTGTGGATTGGTTGGATAGAATGCGCGCCGGAGGGCAATCGACTATGATCATGTCCCCAAACGAGATAGCAAACAATGCGATCAGGCACGCTCTCAGGGCGCTGCGCCAACGCCATCTAGTTGAAGAAGGTGCGCATGCTCCCGCTTTTCTCGCTCTCTCTCGGCCCATCATATCGCAGAGTTCGGAATGGAAAGAGAAAGCAGAGAAGCTGGAGTTGGAGCTTCAGCAATGTTACAAGGCTCAATCGCGATTGTCTGAGCAACTTGTGGTGGAAGTGGCTGAGGGTCGAGCTTCTAAATCTTCGATTGAGGAGAAAGATGCGACGATTGATAATCTGCAGCAGGAGTTAACTCGAGCCAGAATTCAGTTCAGTGTGTTTTTGTATGAATGTTTGAAACTGCCTACGTGCTTCAGGGATGAATGCTCCCAGCTAAAGGCAGACTTAGAGATGAAAATTAAAGCCATGGAACTGGCTATATCTGAGAGCCAAGAACTTAAAGCACAGCTTGAAGCAATGACGATTAAAGCTAAGAATACAGAGGCTGAAAATAATATGTTGATTGACCGGTGGATGCTGCAAAAGATGAAGGATGCAGAACGCCTCAATGAGGCAAATGCACTCTATGAAGATATGATTGACCGACTCAAGGCTAGTGGTTTAGAGAAACTTGCTCAGCAACAGGTCGATGGTGTGGTCCGTCAGAGCGAAGAGGGTGCTGAATACTTCGTAGAATCCACCGTACCCTCTGTATGCAAGCATAGTATCCGTGCGCATGAAGGGGGCTGTGGTACTATTTTGTTTGAAAACAATTCAGGAAAGTTGATCAGTGGGGGGCAGGACCGAACCGTCAAAGTGTGGGATACAAATACTGGATCACTAAGTTCCACTTTACATGGGTGCCTTGGTTCTGTTCTTGATCTTGCAGTTACCCATGATAATAGATCTGTGATTGCAGCAAGCAGTTCAAACAACTTATATGCATGGGACGTTGGTTCTGGAAGGGTGCGCCATACGCTTACCGGTCACTCCGACAAAGTATGTGCTGTAGATGTAAGCAAAATCTCGAGCCGACATGTTGTGAGTGCTGCTTATGATCGCACCATCAAAATCTGGGATTTACAGAAGGGTTACTGCACTAAGACCCTCATTTTCCCCAGCAATTGCAATGCAGTTCGGTTCAGCATGGATGGACAGACCATTTGTTCTGGGCATATGGATGGAAATCTTCGGTTGTGGGATATCCAAACAGGAAAATTGCTCAGCGAAGTTGCTGGACACTCCCTTGCTGTTACATCTCTTTCTTTGTCACGTAATGGCAATACGATATTGACTAGCGGGAGAGATAACTTGCATAATTTATTCGATATTCGGTCTTTGGAAGTCTGCGGGACATTACGGGCATCTGGGAATAGAGTAGCTTCCAATTGGAGCCGTTCTTGCATCAGCCCAGATGACAACCATGTTGCTGCTGGTTCCGCTGATGGATCTGTCCATGTCTGGTCAATATCAAAGCATGATATTGTGAGCACTCTGAAAGAGCACACTGCCTCGGTTCTGTGTTGTTCATGGAGTGGGCTTGGGAAACCCCTTGCGTCTGCGGACAGAAATGGAATTATATTTACATGGAACTGA 2715 46.7 MGGVTSSMAAKFAFFPPNPPSYKLLKDQPTGLLLLDPFPHRENVDVWKLPTRKGTEIVAVYIRYPMATSTLLYSHGNAADVGQMYELFIELSIHLRVNLLGYDYSGYGQSTGKPSEHNTYADIEAAYKCLEEKYGAKQEEIILYGQSVGSGPTLDLAVRLPRLRAVVLHSPILSGLRVMYPVKRTYWFDIYKNIDKIPYVKCPVLVIHGTSDDVVDFSHGKHLWELCQEKYEPLWLKGGNHCDLELFPEYIRHLKKFVSTVERSPSRRNGSRKSTDRIEQSRRSTDCFEAPRRSSDRREKPRKSVDRLDKSRPQGYKFDNIEKLEKLKISIDQVERSRRSVEYYEKPRRSIDQQLERGRKSVDWLDRMRAGGQSTMIMSPNEIANNAIRHALRALRQRHLVEEGAHAPAFLALSRPIISQSSEWKEKAEKLELELQQCYKAQSRLSEQLVVEVAEGRASKSSIEEKDATIDNLQQELTRARIQFSVFLYECLKLPTCFRDECSQLKADLEMKIKAMELAISESQELKAQLEAMTIKAKNTEAENNMLIDRWMLQKMKDAERLNEANALYEDMIDRLKASGLEKLAQQQVDGVVRQSEEGAEYFVESTVPSVCKHSIRAHEGGCGTILFENNSGKLISGGQDRTVKVWDTNTGSLSSTLHGCLGSVLDLAVTHDNRSVIAASSSNNLYAWDVGSGRVRHTLTGHSDKVCAVDVSKISSRHVVSAAYDRTIKIWDLQKGYCTKTLIFPSNCNAVRFSMDGQTICSGHMDGNLRLWDIQTGKLLSEVAGHSLAVTSLSLSRNGNTILTSGRDNLHNLFDIRSLEVCGTLRASGNRVASNWSRSCISPDDNHVAAGSADGSVHVWSISKHDIVSTLKEHTASVLCCSWSGLGKPLASADRNGIIFTWN 904
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 279849 285947 - CmoCh11G000600.1 Cmo11g00060 390679

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00060 904 Coils Coil 463 483 - -
Cmo11g00060 904 ProSitePatterns Trp-Asp (WD) repeats signature. 635 649 IPR019775 -
Cmo11g00060 904 Gene3D alpha/beta hydrolase 46 259 IPR029058 -
Cmo11g00060 904 ProSiteProfiles Trp-Asp (WD) repeats profile. 700 742 IPR001680 GO:0005515
Cmo11g00060 904 MobiDBLite consensus disorder prediction 262 313 - -
Cmo11g00060 904 Gene3D - 500 746 IPR015943 GO:0005515
Cmo11g00060 904 Pfam Serine aminopeptidase, S33 70 174 IPR022742 -
Cmo11g00060 904 ProSitePatterns Trp-Asp (WD) repeats signature. 720 734 IPR019775 -
Cmo11g00060 904 ProSiteProfiles Trp-Asp (WD) repeats profile. 751 783 IPR001680 GO:0005515
Cmo11g00060 904 Pfam WD domain, G-beta repeat 841 862 IPR001680 GO:0005515
Cmo11g00060 904 Pfam WD domain, G-beta repeat 696 733 IPR001680 GO:0005515
Cmo11g00060 904 Pfam WD domain, G-beta repeat 612 648 IPR001680 GO:0005515
Cmo11g00060 904 Pfam WD domain, G-beta repeat 739 774 IPR001680 GO:0005515
Cmo11g00060 904 Coils Coil 559 579 - -
Cmo11g00060 904 ProSiteProfiles Trp-Asp (WD) repeats profile. 872 904 IPR001680 GO:0005515
Cmo11g00060 904 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 700 737 - -
Cmo11g00060 904 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 872 904 - -
Cmo11g00060 904 Coils Coil 506 550 - -
Cmo11g00060 904 ProSiteProfiles Trp-Asp (WD) repeats profile. 616 657 IPR001680 GO:0005515
Cmo11g00060 904 PRINTS G protein beta WD-40 repeat signature 761 775 IPR020472 -
Cmo11g00060 904 PRINTS G protein beta WD-40 repeat signature 720 734 IPR020472 -
Cmo11g00060 904 PRINTS G protein beta WD-40 repeat signature 635 649 IPR020472 -
Cmo11g00060 904 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 616 653 - -
Cmo11g00060 904 SUPERFAMILY WD40 repeat-like 608 904 IPR036322 GO:0005515
Cmo11g00060 904 Coils Coil 421 448 - -
Cmo11g00060 904 Gene3D - 747 904 IPR015943 GO:0005515
Cmo11g00060 904 PANTHER ALPHA/BETA-HYDROLASE SUPERFAMILY PROTEIN 1 316 - -
Cmo11g00060 904 Coils Coil 120 140 - -
Cmo11g00060 904 CDD WD40 612 904 - -
Cmo11g00060 904 SUPERFAMILY alpha/beta-Hydrolases 5 260 IPR029058 -
Cmo11g00060 904 ProSitePatterns Trp-Asp (WD) repeats signature. 761 775 IPR019775 -
Cmo11g00060 904 ProSiteProfiles Trp-Asp (WD) repeats profile. 784 819 IPR001680 GO:0005515
Cmo11g00060 904 ProSiteProfiles Trp-Asp (WD) repeats profile. 843 871 IPR001680 GO:0005515
Cmo11g00060 904 PANTHER ALPHA/BETA HYDROLASE DOMAIN-CONTAINING PROTEIN 1 316 - -
Cmo11g00060 904 SMART WD40_4 865 904 IPR001680 GO:0005515
Cmo11g00060 904 SMART WD40_4 777 816 IPR001680 GO:0005515
Cmo11g00060 904 SMART WD40_4 693 733 IPR001680 GO:0005515
Cmo11g00060 904 SMART WD40_4 651 690 IPR001680 GO:0005515
Cmo11g00060 904 SMART WD40_4 736 774 IPR001680 GO:0005515
Cmo11g00060 904 SMART WD40_4 819 862 IPR001680 GO:0005515
Cmo11g00060 904 SMART WD40_4 609 648 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00060 K17890 ATG16L1; autophagy-related protein 16-1 - csv:101219308 915.22
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo10g00080 Cmo11g00060 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02953 Cmo-Chr4:20900591 Cmo11g00060 Cmo-Chr11:279849 6.79E-145 dispersed
Cmo11g00060 Cmo-Chr11:279849 Cmo15g00227 Cmo-Chr15:1103876 3.40E-143 dispersed
Cmo11g00731 Cmo-Chr11:3553048 Cmo11g00060 Cmo-Chr11:279849 1.78E-12 dispersed
Cmo14g00686 Cmo-Chr14:3504950 Cmo11g00060 Cmo-Chr11:279849 6.91E-15 dispersed
Cmo18g00643 Cmo-Chr18:8108788 Cmo11g00060 Cmo-Chr11:279849 4.53E-28 dispersed
Cmo11g01667 Cmo-Chr11:11826181 Cmo11g00060 Cmo-Chr11:279849 1.46E-12 transposed
Cmo10g00080 Cmo-Chr10:361895 Cmo11g00060 Cmo-Chr11:279849 0 wgd
Cmo11g00060 Cmo-Chr11:279849 Cmo11g01645 Cmo-Chr11:11687040 0 wgd
Cmo11g00060 Cmo-Chr11:279849 Cmo14g00708 Cmo-Chr14:3640892 0 wgd
Cmo11g00060 Cmo-Chr11:279849 Cmo04g02797 Cmo-Chr4:20100244 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g872 . . . . Bpe12g00679 . . Bma12g01282 . . Cma10g00080 Cma11g00058 Car10g00071 Car11g00052 Sed08g0062 . . Bhi02g00575 Tan09g2328 Cmetu02g1969 . Hepe09g0082 . . . . . . . . . . Cone16ag0060 . . . . . . Blo13g00157 . . . Bpe07g01087 . . . . Cmo10g00080 Cmo11g00060 . . . . . Cpe18g00881 . . . . . . . . . . . . . . . Csa01g00088 Chy02g02632 Cme02g02031
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009836 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 3 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g00060 Cmo_Chr11 FPKM 10.558354 10.897204 0.191728 0.0 0.14573 0.329686 0.183161 0.0 0.0 0.0