Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo11g00077 | ATGGCATCATCAAGTTGTTACAACTCTCCATGTGCTGCTTGCAAGTTCTTGAGAAGAAAATGCATGCCAGATTGCATTTTTGCTCCTTATTTCCCACCAGAAGAGCCTCAAAAGTTTGCCAATGTCCACAAGATCTTTGGGGCAAGCAATGTCACAAAGCTGCTCAATGAGCTTCTGCCTCACCAAAGAGAGGATGCAGTGAATTCTCTTGCCTACGAGGCCGAGGCTCGAGTCCGAGACCCGGTCTACGGTTGCATTGGAGCCATCTCCTTCCTCCAAAGGCAAATCCATAGGCTCCAAAAGGAACTCGACGCTGCCAATGTCGACCTAATTCGGTACGCATGCAACGAGATCCCTGATGGCGGAGCGAGTCATGTGGTTCAGCCAATCCCCGACCTACGCCCGAGGGCTTTGGATCAGTATCATACAAGAATTCTTGGGAATGAAGGGTCATCAAGTGGATATTATAATCAACATCCTCCTGCTTTCCCTATGGGCTATCCACTTCCTTGGAATGAAAACTCTTCTGGAAATAACATCAATGAAGGAGGAAGGGATGACAATATTTGA | 570 | 47.54 | MASSSCYNSPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCIGAISFLQRQIHRLQKELDAANVDLIRYACNEIPDGGASHVVQPIPDLRPRALDQYHTRILGNEGSSSGYYNQHPPAFPMGYPLPWNENSSGNNINEGGRDDNI | 189 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 363795 | 364364 | + | CmoCh11G000770.1 | Cmo11g00077 | 390696 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo11g00077 | 189 | ProSiteProfiles | LOB domain profile. | 9 | 110 | IPR004883 | - | |
Cmo11g00077 | 189 | Coils | Coil | 89 | 109 | - | - | |
Cmo11g00077 | 189 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 1 | 188 | - | - | |
Cmo11g00077 | 189 | PANTHER | ELONGATED PETIOLULE 1 | 1 | 188 | - | - | |
Cmo11g00077 | 189 | Pfam | Lateral organ boundaries (LOB) domain | 10 | 106 | IPR004883 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo11g00077 | Cmo18g00146 | CCT | |
Cmo11g00077 | Cmo13g00898 | CCT | |
Cmo11g00077 | Cmo18g00146 | ECH | |
Cmo11g00077 | Cmo13g00898 | ECH | |
Cmo10g00109 | Cmo11g00077 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo11g00077 | Cmo-Chr11:363795 | Cmo20g01156 | Cmo-Chr20:11332397 | 1.21E-49 | dispersed | |
Cmo10g00109 | Cmo-Chr10:468151 | Cmo11g00077 | Cmo-Chr11:363795 | 5.34E-118 | wgd | |
Cmo11g00077 | Cmo-Chr11:363795 | Cmo11g01668 | Cmo-Chr11:11836728 | 3.51E-68 | wgd | |
Cmo11g00077 | Cmo-Chr11:363795 | Cmo13g00898 | Cmo-Chr13:8029265 | 4.06E-63 | wgd | |
Cmo11g00077 | Cmo-Chr11:363795 | Cmo14g00684 | Cmo-Chr14:3497304 | 3.61E-71 | wgd | |
Cmo11g00077 | Cmo-Chr11:363795 | Cmo18g00146 | Cmo-Chr18:1025085 | 6.35E-59 | wgd | |
Cmo11g00077 | Cmo-Chr11:363795 | Cmo04g02817 | Cmo-Chr4:20199087 | 2.38E-63 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10511 | PF03195 | LOB | 5.70E-42 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo11g00077 | - | - | cmos:111438177 | 393.66 |