Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00077 ATGGCATCATCAAGTTGTTACAACTCTCCATGTGCTGCTTGCAAGTTCTTGAGAAGAAAATGCATGCCAGATTGCATTTTTGCTCCTTATTTCCCACCAGAAGAGCCTCAAAAGTTTGCCAATGTCCACAAGATCTTTGGGGCAAGCAATGTCACAAAGCTGCTCAATGAGCTTCTGCCTCACCAAAGAGAGGATGCAGTGAATTCTCTTGCCTACGAGGCCGAGGCTCGAGTCCGAGACCCGGTCTACGGTTGCATTGGAGCCATCTCCTTCCTCCAAAGGCAAATCCATAGGCTCCAAAAGGAACTCGACGCTGCCAATGTCGACCTAATTCGGTACGCATGCAACGAGATCCCTGATGGCGGAGCGAGTCATGTGGTTCAGCCAATCCCCGACCTACGCCCGAGGGCTTTGGATCAGTATCATACAAGAATTCTTGGGAATGAAGGGTCATCAAGTGGATATTATAATCAACATCCTCCTGCTTTCCCTATGGGCTATCCACTTCCTTGGAATGAAAACTCTTCTGGAAATAACATCAATGAAGGAGGAAGGGATGACAATATTTGA 570 47.54 MASSSCYNSPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCIGAISFLQRQIHRLQKELDAANVDLIRYACNEIPDGGASHVVQPIPDLRPRALDQYHTRILGNEGSSSGYYNQHPPAFPMGYPLPWNENSSGNNINEGGRDDNI 189
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 363795 364364 + CmoCh11G000770.1 Cmo11g00077 390696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00077 189 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Cmo11g00077 189 Coils Coil 89 109 - -
Cmo11g00077 189 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 188 - -
Cmo11g00077 189 PANTHER ELONGATED PETIOLULE 1 1 188 - -
Cmo11g00077 189 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo11g00077 Cmo18g00146 CCT
Cmo11g00077 Cmo13g00898 CCT
Cmo11g00077 Cmo18g00146 ECH
Cmo11g00077 Cmo13g00898 ECH
Cmo10g00109 Cmo11g00077 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00077 Cmo-Chr11:363795 Cmo20g01156 Cmo-Chr20:11332397 1.21E-49 dispersed
Cmo10g00109 Cmo-Chr10:468151 Cmo11g00077 Cmo-Chr11:363795 5.34E-118 wgd
Cmo11g00077 Cmo-Chr11:363795 Cmo11g01668 Cmo-Chr11:11836728 3.51E-68 wgd
Cmo11g00077 Cmo-Chr11:363795 Cmo13g00898 Cmo-Chr13:8029265 4.06E-63 wgd
Cmo11g00077 Cmo-Chr11:363795 Cmo14g00684 Cmo-Chr14:3497304 3.61E-71 wgd
Cmo11g00077 Cmo-Chr11:363795 Cmo18g00146 Cmo-Chr18:1025085 6.35E-59 wgd
Cmo11g00077 Cmo-Chr11:363795 Cmo04g02817 Cmo-Chr4:20199087 2.38E-63 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10511 PF03195 LOB 5.70E-42 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00077 - - cmos:111438177 393.66