Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00084 ATGCCTGTAAATTCATGGACCATCTCTTCATTTATCCTAATCCTATGCTTTTGTACTGTTTCCGCCATTAATGAACAGGGCCAAGCTCTGCTCTCTTGGAAGCTAAGTTTCAAGGGATCCAACAGGGTGCTAAGTAATTGGGACCCTAACAATGAAACTCCATGTGGGTGGTTTGGAATCACTTGCAACAAGAACAGACAAGTAGTGGAAGTAGTTCTGAGGAATGTGAACTTACCCGGTGAGCTTCCATGGAATTTCTCTTCGTTCTTGTCGTTGAACAAGCTCGTCTTGTCGGGAGCCAATCTCACCGGCTCTATTCCTAAACAGATCGGTGCTCTCAGCCAGTTGAGGACCTTGGAACTCAGTGACAATGGATTGACTGGAGAAATTCCTAGTGAAATATGCGCTTTGATGAATCTTGAACAGCTTTACCTTAATTCGAATGGTCTTGAAGGATCAATCCCTGCAGGGATCGGGAATCTCACGAACTTGAAGGAGCTGATTCTCTATGATAATCAATTGAGCGGTGAAATTCCGGTTAGTATAGGGAATTTGAGGCGGATTGAAGTGATTAGAGCTGGGGGGAACAAGAACTTACTTGGCTCTGTACCGGAAGAAATTGGTAACTGCAGCAATTTGGTGATTCTTGGGCTAGCTGAAACCAGCATCTCCGGCTTTCTTCCGGCCAGTCTTGGCTTTCTCAAGAAGCTTCAGACGTTGGCAATCTATACTACTCTTCTCTCCGGTCAGATTCCTGATGAACTTGGCGACTGCACTGAGCTTCAAAATCTCTATCTCTACCAGAACTCGCTCTCTGGTTCGATTCCGATCTCATTGGGAAGGTTACGGAATCTTCAAAGTCTGCTTCTATGGCAAAACAATTTGGTCGGCGTTATACCGCCGGAGTTAGGTAGGTGCGACCAGCTAACAGTCATCGACGTTTCGATTAATTCTCTGACGGGAAGAATTCCTTCAACATTTGAGAATTTAACAATGCTTGAAGAATTGCTGTTGAGTTCAAATCAATTAACAGGTGAGATTCCGAAGGAAATCGCGAAATGTTCGAGAATCACTCACATTGAGCTTGATTATAATCAGCTAACTGGTACGATTCCCTCTGAATTGGGGAATCTCGCCAATTTGACATTGCTGTTCTTGTGGCAAAACAAGCTCGAGGGAAGTATTCCATCCACCATTTCCAATTGTCGCAATCTCGAGGCCTTGGATCTATCACTGAATGCCTTGACTGGTTCAATTCCGACGGGAATATTTCAGTTGAAGAAGCTTTCCAAGCTGTTGCTCCTCTCCAATAATCTCTCCGGCGGGATCCCGCCGGTGATTGGTAACTGCTCGTCTCTATCTCGGTTCCGAGCGAATAACAACAAGCTCGCGGGGGAAATTCCGCCGGAGATTGGGAATTTGAAGAACTTGATTTTCTTGGACCTCGGAAACAATCGCCTCACTGGAGCGTTGCCTCCGGAGATTTCTGGATGCCGGAATTTGACATTCATTGATTTGCATTCTAATTCTTTAACGAAATTTCTTCCAGAAGAACTCAACCAGCTTTCTTTGCTCCAGTTCGTTGATCTTTCAAATAACCTAATCGAAGGGGCGCCGATTCCGAGTTTTGGATCTTTCAACTCGCTCACGAAACTCGTTCTCTCAAACAACCGCTTCTCGGGGCCTATTCCGACGGAAATCGGTTTCTGCTTGAAATTACAGTTACTGGATTTAAGTTGCAATCAACTCTCCGGGAACATTCCACCGAGCTTAGGCAAGATTCCTTCCCTCGAAATCGGTCTCAATCTGAGCTTAAACCAACTAACCGGCAAGATTCCGCTGGAGTTTGCAAATCTAGACATGCTCGGGTCATTGGACCTCTCTTACAATCAACTCTCAGGCGACCTCCACATTCTCGCAGAACTGCAAAATCTCGTGGTTCTCAATGTATCTCACAACAATTTCTCAGGACGCGTACCTGAGACGCCATTCTTCGCGCAGCTCCCTTTGAGCGTTCTCTCCGGGAACCCGGAGTTATGCTTCGCCGGCGAGAAGTGCTACGCCGATGGCCATGGCAGCGGCGCTCCCCACACGCTAGCGGCTCGAGTGGCCATGATTGTATTGCTGTGCACGGCATGCGTAATGCTACTAGCGGCAGTTTATATCGTTCTCAAAGATAGACATTCATGTCGGGGATACTTCAGTGGGTCCCGCGGCGAAGATTCAGACGACGCCTTTGACAGCGACTTGGAGCTTGGCTCTGGCTGGGAAGTGACACTATACCAGAAGCTCGATCTTCCGATCTCCGAGGTAATCAAATGCTTAACGCCGGCTAATGTCATCGGCCGCGGCAAGACCGGCGTCGTGTACAGAGCCTGCATCTCATCAGGTCTAACAATCGCTGTGAAGCGATTCCGATCATCGGAAGTGTTCTCAGCGGCGGCGTTTTCATCCGAAATCGCAACATTGGCGAGGATCCGACATCGGAACATCGTCCGATTGCTAGGGTGGGGGGCGAATCGGAGGACGAAATTGTTGTTCTACGACTACTTGCCGAATGGGAATTTGGGTGCGTTGCTACACGAGGGGAATGGGCGCGTGGGGCTGGACTGGGAGAGTAGATTTAAGATAGCGTTGGGTGTGGCGGAGGGATTGGCTTATTTGCACCACGACTGCGTGCCGGCAATATTGCACCGTGACGTGAAGGCTCACAATATTCTGTTGGGGGATTGCTACGAAGCGTGTTTGGCAGACTTTGGGCTCGCTCGGTTGGTTGAAGATGGTCCGAGCGGTTCGTCTTCAACGAACCCTCAGTTTGCTGGGTCTTACGGTTATTTTGCACCTGAATATGGATGCATGTTGAGGATCACAGATAAGAGTGACGTGTATAGCTATGGCGTCGTTTTGTTGGAGATAATAACGGGCAAAAAGCCTATAGACTCCTCATTCGCAGAAGGCCAACACGTGATTCAATGGGTGAGAGACCATTTAAAGAAGAAGAAGAATCCAATTTCAATACTAGATTCGAAACTTCAAGGACGACCCGACCCGATAATCCAAGAGATCTTGCAAGCATTAGGAATCTCTTTGCTTTGCACAAGTGACCGTGCTGAAGATCGACCGACAATGAAAGACGTGACGGCTCTTTTACGTGAGATCCGACAAGACCAGCTATCAACAACAGCAGATGCCGTTGACAAGCTACCACAAAAGAATAGCAACACGACAAACTTGGACACAAAGACATTGATTTTATCCTCATCTTCTATGGCGAATCATTTACCTTTTGCACTACCCGTTCAAGAGTCGTCACATTGCTCTTATGCTTCGTTGTCCTCGTTGGGTGAATATTTTTCACGCAACCAGTGA 3369 47.52 MPVNSWTISSFILILCFCTVSAINEQGQALLSWKLSFKGSNRVLSNWDPNNETPCGWFGITCNKNRQVVEVVLRNVNLPGELPWNFSSFLSLNKLVLSGANLTGSIPKQIGALSQLRTLELSDNGLTGEIPSEICALMNLEQLYLNSNGLEGSIPAGIGNLTNLKELILYDNQLSGEIPVSIGNLRRIEVIRAGGNKNLLGSVPEEIGNCSNLVILGLAETSISGFLPASLGFLKKLQTLAIYTTLLSGQIPDELGDCTELQNLYLYQNSLSGSIPISLGRLRNLQSLLLWQNNLVGVIPPELGRCDQLTVIDVSINSLTGRIPSTFENLTMLEELLLSSNQLTGEIPKEIAKCSRITHIELDYNQLTGTIPSELGNLANLTLLFLWQNKLEGSIPSTISNCRNLEALDLSLNALTGSIPTGIFQLKKLSKLLLLSNNLSGGIPPVIGNCSSLSRFRANNNKLAGEIPPEIGNLKNLIFLDLGNNRLTGALPPEISGCRNLTFIDLHSNSLTKFLPEELNQLSLLQFVDLSNNLIEGAPIPSFGSFNSLTKLVLSNNRFSGPIPTEIGFCLKLQLLDLSCNQLSGNIPPSLGKIPSLEIGLNLSLNQLTGKIPLEFANLDMLGSLDLSYNQLSGDLHILAELQNLVVLNVSHNNFSGRVPETPFFAQLPLSVLSGNPELCFAGEKCYADGHGSGAPHTLAARVAMIVLLCTACVMLLAAVYIVLKDRHSCRGYFSGSRGEDSDDAFDSDLELGSGWEVTLYQKLDLPISEVIKCLTPANVIGRGKTGVVYRACISSGLTIAVKRFRSSEVFSAAAFSSEIATLARIRHRNIVRLLGWGANRRTKLLFYDYLPNGNLGALLHEGNGRVGLDWESRFKIALGVAEGLAYLHHDCVPAILHRDVKAHNILLGDCYEACLADFGLARLVEDGPSGSSSTNPQFAGSYGYFAPEYGCMLRITDKSDVYSYGVVLLEIITGKKPIDSSFAEGQHVIQWVRDHLKKKKNPISILDSKLQGRPDPIIQEILQALGISLLCTSDRAEDRPTMKDVTALLREIRQDQLSTTADAVDKLPQKNSNTTNLDTKTLILSSSSMANHLPFALPVQESSHCSYASLSSLGEYFSRNQ 1122
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 394869 398662 + CmoCh11G000840.1 Cmo11g00084 390703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00084 1122 ProSitePatterns Serine/Threonine protein kinases active-site signature. 896 908 IPR008271 GO:0004672|GO:0006468
Cmo11g00084 1122 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Cmo11g00084 1122 Gene3D Ribonuclease Inhibitor 76 321 IPR032675 -
Cmo11g00084 1122 ProSitePatterns Protein kinases ATP-binding region signature. 781 803 IPR017441 GO:0005524
Cmo11g00084 1122 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 9 1071 - -
Cmo11g00084 1122 Gene3D Ribonuclease Inhibitor 418 686 IPR032675 -
Cmo11g00084 1122 Gene3D Ribonuclease Inhibitor 18 75 IPR032675 -
Cmo11g00084 1122 SMART serkin_6 775 1059 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo11g00084 1122 SMART LRR_typ_2 522 545 IPR003591 -
Cmo11g00084 1122 SMART LRR_typ_2 282 306 IPR003591 -
Cmo11g00084 1122 SMART LRR_typ_2 474 498 IPR003591 -
Cmo11g00084 1122 SMART LRR_typ_2 642 675 IPR003591 -
Cmo11g00084 1122 SMART LRR_typ_2 403 426 IPR003591 -
Cmo11g00084 1122 SMART LRR_typ_2 113 137 IPR003591 -
Cmo11g00084 1122 SMART LRR_typ_2 330 354 IPR003591 -
Cmo11g00084 1122 SMART LRR_typ_2 546 570 IPR003591 -
Cmo11g00084 1122 SMART LRR_typ_2 378 402 IPR003591 -
Cmo11g00084 1122 SMART LRR_typ_2 161 185 IPR003591 -
Cmo11g00084 1122 Gene3D Ribonuclease Inhibitor 322 417 IPR032675 -
Cmo11g00084 1122 SUPERFAMILY Protein kinase-like (PK-like) 767 1050 IPR011009 -
Cmo11g00084 1122 ProSiteProfiles Protein kinase domain profile. 775 1050 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo11g00084 1122 Pfam Leucine rich repeat 380 439 IPR001611 GO:0005515
Cmo11g00084 1122 Pfam Leucine rich repeat 308 367 IPR001611 GO:0005515
Cmo11g00084 1122 Gene3D Phosphorylase Kinase; domain 1 761 850 - -
Cmo11g00084 1122 Pfam Protein kinase domain 779 1045 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo11g00084 1122 SUPERFAMILY RNI-like 263 630 - -
Cmo11g00084 1122 PANTHER OS01G0170300 PROTEIN 9 1071 - -
Cmo11g00084 1122 SUPERFAMILY L domain-like 52 301 - -
Cmo11g00084 1122 Gene3D Transferase(Phosphotransferase) domain 1 851 1078 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo11g00084 Cmo18g00141 CCT
Cmo10g00117 Cmo11g00084 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g01033 Cmo-Chr9:5521116 Cmo11g00084 Cmo-Chr11:394869 0 dispersed
Cmo11g00084 Cmo-Chr11:394869 Cmo17g00120 Cmo-Chr17:661522 0 dispersed
Cmo10g00853 Cmo-Chr10:4035979 Cmo11g00084 Cmo-Chr11:394869 1.75E-72 transposed
Cmo10g00117 Cmo-Chr10:515742 Cmo11g00084 Cmo-Chr11:394869 0 wgd
Cmo11g00084 Cmo-Chr11:394869 Cmo18g00141 Cmo-Chr18:1006291 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74639 PF00069 Pkinase 8.80E-38 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00084 - - csv:101206847 1863.97