Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00085 ATGGCAGACCCAACAGGTTCATCAGCTTCAGATAAGGCTCATGCATCCTCTCATTCTTCATCGGACCAGCAAAACACTAAACGGGATTTTTCCACTGCAATTTTGGAACGCAAGAAGTCTCCGAATCGTTTAGTTGTTGATGAGGCTATCAATGATGATAACTCTGTGGTTTCTTTGCATCCTGTTACCATGGAAAAGCTGCAGTTCTTTAGAGGAGATACTATTTTATTGAAGGGGAAGAAGCGGAGAGATACAGTGTGCGTTGTTCTTTCCGATGAGCAATGTGAAGAGCCAAAAATCAGAATGAATAAAATTGTACGAGCCAATCTCAGAGTTCGTCTTGGAGATGTTGTATCTGTCCATCAGTGTCCAGATGTGAAGTACGGAAAGCGGGTTCACATCCTCCCTGTTGATGATACAATCGAGGGTGTTACTGGCAACCTATTTGATGCATATTTGAAACCTTATTTCTTGGAAGCATATCGACCCGTTAGGAAGGGTGACCTGTTCTTAGTCAGGGGTGGAATGAGAAGTGTTGAGTTCAAGGTCATAGAGACAGACCCTGGTGAATACTGCGTTGTTGCACCCGATACCGAGATCTTCTGTGAGGGAGAGCCCATCAAACGTGAGGATGAGGAGAGATTAAATGAAGTCGGATATGATGATGTTGGAGGAGTTAGGAAGCAAATGGCTCAGATCCGTGAATTAGTGGAATTACCACTTAGACATCCGCAACTTTTCAAATCGATTGGCGTAAAGCCTCCGAAAGGGATATTGCTATATGGGCCTCCTGGATCTGGAAAAACTCTTATAGCCAGAGCTGTTGCTAATGAGACGGGTGCATTTTTCTTTCTGATTAATGGTCCAGAAATAATGTCTAAGTTAGCTGGTGAGAGTGAAAGCAATCTGAGGAAGGCGTTTGAGGAAGCTGAAAAGAATGCCCCTTCAATTATATTTATTGATGAACTTGATTCCATTGCTCCAAAGAGGGAGAAAACACATGGAGAAGTGGAAAGGCGTATCGTATCCCAACTTCTTACCTTGATGGATGGCCTCAAAACTCGAGCACATGTTATTGTTATCGGAGCAACGAACAGACCCAACAGCATTGACCCTGCTTTGAGGAGATTCGGAAGATTTGATCGAGAGATTGATATTGGTGTTCCTGATGAAGTAGGACGATTGGAAGTCCTTAGGATCCATACAAAGAACATGAAACTTGCCGAGGATGTGGATCTTGAAAGAGTTGCACGGGATACTCATGGTTATGTCGGTGCTGATCTCGCCGCTCTTTGTACTGAAGCAGCACTCCAGTGTATTCGCGAGAAAATGGATGTCATCGACTTGGAAGATGAAACAATTGACGCTGAGGTTTTGAATTCCATGGCTGTAACTAATGAACATTTCCAAACTGCTTTAGGGTCTTCGAATCCTTCAGCGTTGCGGGAAACTGTCGTGGAGGTTCCGAATGTTTCGTGGGATGATATCGGTGGGTTGGAAAATGTTAAAAGAGAGCTGCAGGAGGTCTGTGCGCTGTTTATCTTCTTGAAGTTTGCATTTTCGACTGTCCAATATCCAGTGGAGCATCCTGAGAAGTTTGAAAAATTTGGCATGTCACCATCTAAAGGTGTCCTCTTTTATGGGCCCCCGGGCTGTGGTAAGACGCTGCTGGCTAAGGCAATTGCCAATGAATGTCAGGCCAACTTTATAAGTGTGAAAGGACCTGAGTTACTGACAATGTGGTTCGGTGAAAGTGAGGCAAATGTGAGAGAGATATTTGACAAGGCTCGTCAGTCGGCTCCTTGTGTACTATTTTTCGATGAACTCGATTCTATCGCAACTCAGCGTGGTAGTTCTGTTGGGGATGCTGGTGGTGCAGCAGATAGAGTCTTGAACCAACTTCTTACAGAAATGGATGGCATGACTGCGAAGAAGACCGTGTTTATAATTGGGGCGACAAACAGGCCAGACATTATAGACCCGGCGCTGCTCAGGCCGGGACGTCTGGACCAACTAATATACATCCCGCTCCGGGACGAATCTTCACGTCTTCAAATTTTCAAAGCATGTCTCCGAAAGTCGCCAGTGTCAAAAGATGTCAATCTATCAGCTCTTTCACGGTACACCCATGGCTTTAGTGGAGCTGATATCACTGAAATATGTCAGCGTGCCTGCAAATATGCCATTAGAGAAAATATCGAAAAGGATCTTGAGAGGGAGAGAAAGATGAGAGAAAACCCAGAAGCCATGGAGGAAGACGACATCGACGAAGTCTCAGAGATAAAGGCAGCACATTTTGAGGAGTCAATGAAGTATGCTCGTAGAAGTGTCAGCGATGCAGACATCAGGAAGTACCAGCTGTTTGCTCAGACCCTACAGCAATCTCGTGGGATCGGATCGGAATTTCGGTTCCCCGATCGAACCGACAACGTAACTGCAGGAGCGGCTGACCCATTTTCTTCCGCTGTAGCTGCTGGAGATGATGATGATCTTTACAGCTGA 2502 45.24 MADPTGSSASDKAHASSHSSSDQQNTKRDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPVTMEKLQFFRGDTILLKGKKRRDTVCVVLSDEQCEEPKIRMNKIVRANLRVRLGDVVSVHQCPDVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPIKREDEERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKTRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEVLNSMAVTNEHFQTALGSSNPSALRETVVEVPNVSWDDIGGLENVKRELQEVCALFIFLKFAFSTVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMTAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLRDESSRLQIFKACLRKSPVSKDVNLSALSRYTHGFSGADITEICQRACKYAIRENIEKDLERERKMRENPEAMEEDDIDEVSEIKAAHFEESMKYARRSVSDADIRKYQLFAQTLQQSRGIGSEFRFPDRTDNVTAGAADPFSSAVAAGDDDDLYS 833
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 398885 403667 - CmoCh11G000850.1 Cmo11g00085 390704

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00085 833 Gene3D - 681 789 - -
Cmo11g00085 833 CDD AAA 540 677 - -
Cmo11g00085 833 SMART CDC48_N_2 43 126 IPR003338 -
Cmo11g00085 833 Pfam AAA+ lid domain 699 738 IPR041569 -
Cmo11g00085 833 Pfam AAA+ lid domain 410 452 IPR041569 -
Cmo11g00085 833 MobiDBLite consensus disorder prediction 1 31 - -
Cmo11g00085 833 TIGRFAM CDC48: AAA family ATPase, CDC48 subfamily 44 793 IPR005938 GO:0016787
Cmo11g00085 833 SMART AAA_5 540 679 IPR003593 -
Cmo11g00085 833 SMART AAA_5 254 390 IPR003593 -
Cmo11g00085 833 Pfam Cell division protein 48 (CDC48), N-terminal domain 43 124 IPR003338 -
Cmo11g00085 833 Gene3D - 20 125 - -
Cmo11g00085 833 SMART CDC48_2_2 143 209 IPR004201 -
Cmo11g00085 833 MobiDBLite consensus disorder prediction 1 30 - -
Cmo11g00085 833 ProSitePatterns AAA-protein family signature. 358 376 IPR003960 GO:0005524|GO:0016887
Cmo11g00085 833 Gene3D - 126 222 - -
Cmo11g00085 833 Gene3D - 481 677 IPR027417 -
Cmo11g00085 833 SUPERFAMILY ADC-like 39 123 IPR009010 -
Cmo11g00085 833 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 489 790 IPR027417 -
Cmo11g00085 833 PANTHER AAA-FAMILY ATPASE 18 807 - -
Cmo11g00085 833 Pfam Cell division protein 48 (CDC48), domain 2 145 208 IPR004201 -
Cmo11g00085 833 ProSitePatterns AAA-protein family signature. 647 665 IPR003960 GO:0005524|GO:0016887
Cmo11g00085 833 CDD AAA 224 387 - -
Cmo11g00085 833 Gene3D - 389 480 - -
Cmo11g00085 833 PANTHER CELL DIVISION CYCLE PROTEIN 48 HOMOLOG 18 807 - -
Cmo11g00085 833 MobiDBLite consensus disorder prediction 799 833 - -
Cmo11g00085 833 SUPERFAMILY Cdc48 domain 2-like 125 217 IPR029067 -
Cmo11g00085 833 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 217 479 IPR027417 -
Cmo11g00085 833 Pfam ATPase family associated with various cellular activities (AAA) 258 387 IPR003959 GO:0005524|GO:0016887
Cmo11g00085 833 Pfam ATPase family associated with various cellular activities (AAA) 544 677 IPR003959 GO:0005524|GO:0016887
Cmo11g00085 833 Gene3D - 223 387 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00085 K13525 VCP, CDC48; transitional endoplasmic reticulum ATPase - csv:101205889 1534.62
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00583 Cmo-Chr3:5633046 Cmo11g00085 Cmo-Chr11:398885 1.02E-28 dispersed
Cmo03g01213 Cmo-Chr3:9424241 Cmo11g00085 Cmo-Chr11:398885 1.54E-22 dispersed
Cmo07g00933 Cmo-Chr7:4484293 Cmo11g00085 Cmo-Chr11:398885 0 dispersed
Cmo11g00085 Cmo-Chr11:398885 Cmo14g00209 Cmo-Chr14:945027 0 dispersed
Cmo19g00490 Cmo-Chr19:5844420 Cmo11g00085 Cmo-Chr11:398885 1.88E-12 dispersed
Cmo11g00085 Cmo-Chr11:398885 Cmo06g00381 Cmo-Chr6:1853732 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g791 . . . . . . . . . . . Cma11g00084 . Car11g00077 . . Cpe04g01568 Bhi02g00487 . . . . . . Cla06g01678 Cam06g1866 . Cco06g1920 Clacu06g1821 Cmu06g1763 Cre06g2580 . . Cone13ag0155 . . . . . . . . . . . . . . . Cmo11g00085 . . . . . . . . . . . . . . . . . . . . Lsi06g01567 Csa01g00131 Chy02g02596 Cme02g01992
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000638 2 4 4 4 4 3 5 3 3 3 3 2 5 3 3 5 3 3 5 3 3 3 3 3 3 3 3 3 2 3 99
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g00085 Cmo_Chr11 FPKM 0.448812 0.0 0.401694 0.0 1.915785 2.044247 1.933273 0.0 0.17347 0.0