Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00087 ATGGCGGCACGTCTCAGCCTCACTCTACGCCATCCGTTTCTTCCCGCCAGTTATCCAATTCCAGCCAGGGCTACTCAATTTCGCAGATGCGCAGTTGAGAACTGCGTCTCCGACTCATATGATTCGCGCAAGCTCGTCTTGGAAGTGAAGGAGAAACTCGAAAGAGAATATAGTAGTCTTCCTCTTGGTCGGAATGGAAGAGACGATGAAAAGATGATACTCTGGTTTCTGAAGGATCGAAAGTTTTCCGTTGATGATGCGGTTGCAAAATTAACGAAAGCAATTAACTGGCGTCAGGAATTTGGCGTAGATGAACTGTCTGAAGATTCAGTTAAAGGAATGGCTGAAACTGGGAAAGCATTCGTCCATGAGTTTCTTGATGTCAATGGCAGGCCAGTACTCATAGTTGTGGCTGCCAAGCATTTACCTGCAGTCCATGACCCTCTTGAGGATGAGAAACTCTGTGTGTTCTATGTAGAGAAGGCACTGAGCAAGCTTCCAACTGGAAAAGAAGACATCCTTGGAATAATTGATCTGCGAGGTTTTAGTACTGAGAATGCAGATCTTAGGTTCTTGACGTTTTTGTTTGATGTCTTCTACTTCTACTATCCGAAACGACTTGGTCAAGTCCTCTTTGTGGAAGCTCCATCTGTGTTCAGACCACTATGGCAACTTACTAAGCCATTATTAAAATCCTATGCATCTCTGGCGAGATTTTGTTCCATAGATACAATCAGAAAGGAATACTTTACTGAAGATACACTGCCTGCCATCTTTAAAGACTGA 786 43.89 MAARLSLTLRHPFLPASYPIPARATQFRRCAVENCVSDSYDSRKLVLEVKEKLEREYSSLPLGRNGRDDEKMILWFLKDRKFSVDDAVAKLTKAINWRQEFGVDELSEDSVKGMAETGKAFVHEFLDVNGRPVLIVVAAKHLPAVHDPLEDEKLCVFYVEKALSKLPTGKEDILGIIDLRGFSTENADLRFLTFLFDVFYFYYPKRLGQVLFVEAPSVFRPLWQLTKPLLKSYASLARFCSIDTIRKEYFTEDTLPAIFKD 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 412988 416321 + CmoCh11G000870.1 Cmo11g00087 390706

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00087 261 SMART sec14_4 114 254 IPR001251 -
Cmo11g00087 261 SUPERFAMILY CRAL/TRIO domain 109 249 IPR036865 -
Cmo11g00087 261 SUPERFAMILY CRAL/TRIO N-terminal domain 39 110 IPR036273 -
Cmo11g00087 261 CDD SEC14 116 232 IPR001251 -
Cmo11g00087 261 Pfam CRAL/TRIO domain 116 233 IPR001251 -
Cmo11g00087 261 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 110 261 IPR001251 -
Cmo11g00087 261 PANTHER SEC14P-LIKE PHOSPHATIDYLINOSITOL TRANSFER FAMILY PROTEIN 22 261 - -
Cmo11g00087 261 Gene3D - 21 256 IPR036865 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00087 - - - csv:101207326 465.692
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo10g00122 Cmo11g00087 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00087 Cmo-Chr11:412988 Cmo01g01467 Cmo-Chr1:11412068 2.96E-18 dispersed
Cmo10g00122 Cmo-Chr10:536567 Cmo11g00087 Cmo-Chr11:412988 1.89E-154 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g787 Blo04g00729 . . . . . . . . . Cma10g00117 Cma11g00086 Car10g00105 Car11g00078 Sed08g0100 . Cpe04g01567 Bhi02g00480 Tan09g2270 Cmetu02g0395 . Hepe09g0214 . . Cla06g01675 Cam06g1863 Cec06g1912 Cco06g1917 Clacu06g1818 Cmu06g1760 Cre06g2577 . . Cone13ag0153 Cone19ag0152 . . . . . . . Bda14g00804 . Bpe15g00643 Bma03g00777 . . Cmo10g00122 Cmo11g00087 . . . . . Cpe18g00850 . . . . . . . . . . . . . . . Csa01g00134 Chy02g02593 Cme02g01989
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003080 1 2 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 2 0 1 5 11 1 52
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g00087 Cmo_Chr11 FPKM 10.082644 10.128798 12.728879 7.972849 15.582454 10.255269 17.86356 13.749594 8.880324 12.415617