Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00088 ATGACGTCAAGTATGTTGACTGGAGAACGGAGGTGGACATCAACCAGACGAGGTGGGATGACTGTTTTAGGAAAGGTTGCAGTTCCAAAACCTATAAACTTACCGAGTCAAAGGTTAGAAAATCATGGTTTGGACCCAAATGTGGAAATTGTACCCAAGGGTACACTCAGTTGGGGCAATAAATCAACTTCATCTGCAACAAATGCATGGGGTTCCTCATCAGTTTCTCCAAATACAGAAAGTGCTTCTAGTTCACCAAGCCATATCTGTGGTCGCCCTTCATCTGCTGGTGGTGGCACTCGTCCATCAACTGCTGGTAGTGACAGGTCCCATGAACCTCATGGTAATGCGTGGGGCCCAAGTTCTAGACCATCATCTGCCTCTGGGCCTGTGACATTAAATCATGCATCACTCGCATCCTTACGCCCTCAGAGTGCAGAAACTAAGTCTAGTAGTTCACAATTGTCACGATTTGCAGAGACTTCTGAAAATCCAGTGGCTTGGAATTCTGCTGTGACTACAGAGAAAGTGGGAACAATGCCATGTAAGAGTGATGGGTTTTCTTTGACATCTGGAGATTTTCCTACGCTGGGTTCAGAAAAAGAATGTGTAGGAAAGGGTGCCGAGTCACAAGATAATATGTCCAATGGAGGAGCAACAATGAAAGAGATGACTGGAACTTCGGCAATGGATGATCCTGAAAATGTAACTGCAAGTGTTTATACCTTGAGAAGTGATAATCTTCCACACAACGATGAGGGATCTAGGCCAAATGCAGAGAAATGGGTGGGGCATCCCCAACCTTACCCTGGTGCAAATATTCCTCCCCCACGTTATGATGGCTGGCATGGATCTCCAGTAAACAATCCTCAAGGTGGTGTATGGTATAGAGGTCCTCCACAAGGAGGTCCGCCGTATAGAACTCCAGTTGCTCCTGGTAATTTCCCTATGGATCCATTTCTGTATTATCCTCAGATTCCCCCTGGTGGCCTTCCAAATCCCCACGCTCCTCATGGAACTGGACCCAGGGGCCCCCATCCTAATACTGGAGATATATACAGACCTCCTATGCACGATGGTTTTATTCACCCAGGTGTGTCAATTAGGCCTGGATTTTACCCAGGTCCAGTTACCTATGAGGGGTATTACCGTCCTCCCATGGGCTACTGTAATTCGAATGATAGAGATGCTCCATTTATGGGAATGCCTGCTGGGCCTTCTGGGCCTGCTGGTCCTGCTGTTTACAACAGGCACTTGGGCCAGGGCAAAAGTGCCTCTGAGCCTGCAAGTTCCCATGGCTTATCCAGTGGACATGGTTCTAGTGGAAAGGCTTTGGTTCCAGAACAAGTAGAATCTGATCTTCCTTGTGATAATCAAGGACCATACAAGGTTCTGATGCAGCAGGGAAACTTGAATGGTAAGAACGAAGAAGAAGAAAATAGGGTAAACCCAACAACTACTAATCAGTTGATTCTTGAGAAGGCTGACCAACAGAGGGCGTCTCCATGGGAGAATGACTGGGATCATAAAAAGGAAGTTGATGTGAGGAAAAGAACATTTGGGGTGGAACCATTTGCTCAGGCTTCTGCCAGCCATAAAGCTCAATCTTCTGAAAATATTGAAGGGAAGTCCTGTGGAAGCATGAGGACTGGTGATGGTTTACTAGAAAAATCAGATGCTGCTGCTTCTGGTTTCTCTGAAGTTTCGAAATCACTGGCTCCTGCCACAAAAGATTCAAGTCTGATTCAGAAGATAGAGGGACTAAATGCCAAAGCCCGGGCTTCTGATGTGCGACATGATGATGCACCTATTTCCAGCAGGGAGGAGTCAAATGAGCTTCAATCTAAAGATAAGCACTCTGATCATTTTGTTGCCCATGAAGCTGGTGTGAGTACTGTTCTTCCTCAAAATAGGGATTTTAATGAAGTCATAGACCCTGCCTCCTGTGAATTGAGCTTGTCCACTGGTGATAGGAACGTTAAATTATACAGTGGAGCACCCGTTCACAGGAGGTCTAACCGTGGAATGCAAGGGAGAAATGATCACCATGGTCGAGGAAAAGTCAATACGCAAGAGGTTGAAGGGTGGCATAAAAGACCCATATTGGACTCCCCAGGCATGATAGCTACTCCCCAGGAAAGTTCTGTTCTTGCGAGAGACCACAGCGCTTTAGGGGCTATTGATAAGCCGGAGTCATTTCCTTCTGATAGCCATGGAGATGTACCTGCCCCATCCGTAGGTGATTCAAAAGATAGTCAAGCTCAGCGTACAAAGATGAGAGAGCTAGCAAAGCAACGCACCAAACAACTGCAGGAGGAAGAGGAGGAAAGGACTAGAAAACAGAAGGCCAGGGCCTTGGCAAAACTTGAAGAGTTGAACAGGCGTACAGTAGCAGGGGAAGGGCCAACTCAGTGGTCTGAAAATGCATCTAATGATGCCATTAGAAATAAGATAGAAGAACCTCGAAATGTTGGTAACCCAAGAACGATTGATATGATATCTGGAGAGCATAACACAGTTTCTGATCTGCACGTGGTTGCTAACAATAGTGAGTCAACTATGGGCACTAACAAGAATTCTCCCATTGTATCAGAAAATACATCATCGAAGAATCAAAGTAGTGGCAATAAGGAAAAGGTTGTGGCACCTATTGAATCAAGACCTATTGAGCAGGATGCAGCTCAAAATAAGAACGTCTCTGGGGTAAATGGGGGCGGTGCATCCTTGAAGCACAAGCGTACAGGAAATAAACAGAAACCAAATACTCCATCTGACAAGACTGAAAAGCTTCCCCATTTAGTTAAGGAATCGAAAAGTCAGACCGTTGTTGCTGACATTCATTCAGTTGTAGAGGAGTCGAGCAATGTCACTACAGATCCTGTTGCTGAATCTTCGACACCTACAAGAAAGAAACATAACAAGAGTGGGAAGAACAAGCACAAAGTGGAAGAGGCCTCAATATCTACATCATTACCCCAAGTTTCAAAAGAAGCAACTCCTACAACGGAATATGATAAACAAACGGCTTCTCAATCAGTAATGAATCCACCTTCAGATCCACAACTGCCCATTAATAGAGATGATAATCAGTTCAATTTGCAGCAACCTCTGTTGTCAGTTGTAGAGACACATGGCAAAGGTAATGGTCAGTGGAAGTCTCAGCATTCTCGCAGGATGCCGAGAAATGCACAAAATAAACCAGGAGAAAAAATCCACGGCGGTGATTCTGTTGTCTGGGCCCCAGTGCGATCTCTCAACAAATGTGAAGTTTCCATTGAAGCTGTTCAGAAGAATGAAGCTGAGGCTGTTGCTTCATCTGTAAAGATTGATAACCAAGTGCAGAATATACCAAAAAATAAGAGAGCTGAAAGGGAGATATACGTACCGAAGCCAGTAGCCAAAGAAATGGCACAGCAAGGAACCTTCCATCAAGATTTTTCGCCCATGAACCAGGCACCAGATGATAATAAGGCAGATTCGAGTTCTCAAAGCTCTGATAATACTCGATCCAGTGTTGCTGCTTCAGGTATGGGATTTTCCACAGACCACAGAAATGGGGATGGTAGGCACCATAAACAAAGCAAGGCACACGCCTCATGGCGGCAACGGGGAGGAGCAACCGAATATGGTCAGGGTTTACAAGATCAATCATCTTATGCTTCAAATGCTGGTAGTTATGTTAAAAAATCAAGTGAGTATCAAGTACCTGAGAAGCCTGCTGGAAACTCCACCAGTGAGTTCGTGAGTCAGATTGATGAGTGGGATCCACCTGAAGGGTGGAATGATCCCAACTACTCCGCCTCTACCCCACCTGTCACTGCAGTCCTTGGAAGAGACCGGGGAGTGACTGGCAGGGGAAAACGATCCCAATTTAAGGGTCACAAGGGTATTGGGAACAATTATGATCTAAATGAAAGGAAACTTAAAAGTGGAGACCACGAAAAAATTTCCTCTGAATCTTCGATGCCTGAAGTGGATCAAAAGGATGCATCAGCTGCTGCTAAAGAAAGTCGGGGTGTCGGGGAACGTTCAACATCTCATTGGCAACCCAAATCACGGATGGTTCAACCCCACAATCATCAAGGTAGCAAGGCGAGAGGTGATCAAAATGTTGATGCTGATGCTGCGCAAACTAATAAAACGGGATCTAGTCTATCTTCACATGGCACAAAGACGAGTGATGGTGTGACCCAAAATCATGAAGAGGGAGCAAGTGTTGGGCATCATGGGTTCGGGGGAGATAAGAAAATTTCTTCCCGTAAAGACCGTCCATACTCCCCAACCCAAGGTCCAATCCATAATGAAGAGGTTGCTCCAGCAAATTCAGATGTGAGACGCCAGCAACAGTTGCCTTCATTTTACCATAAAGGTAATGAGATCAATAACCGATTTGGAAGAGGGTCGGAGTCTCGTCGGGAAATGAATTTGTTTCAATATCATAAGCAGCAGCAGAATTTTCCACCTGCTAATAGGGACAGGCAAAGACAAAATTTGCAGTACGAGTACCAGCCAGTTGGGCCACACAATGGAAAACCAAACATGGATAGACCCAAGGATAATACCACTCAGCATTCAGGATCAAGGTACATAGAGAGGGGCCAAGGCCAATCCAGAAGAGATGGTGGGAACTTTTACAAGCAGGAAGGTGGAGGACCAGTTTGA 4662 45.52 MTSSMLTGERRWTSTRRGGMTVLGKVAVPKPINLPSQRLENHGLDPNVEIVPKGTLSWGNKSTSSATNAWGSSSVSPNTESASSSPSHICGRPSSAGGGTRPSTAGSDRSHEPHGNAWGPSSRPSSASGPVTLNHASLASLRPQSAETKSSSSQLSRFAETSENPVAWNSAVTTEKVGTMPCKSDGFSLTSGDFPTLGSEKECVGKGAESQDNMSNGGATMKEMTGTSAMDDPENVTASVYTLRSDNLPHNDEGSRPNAEKWVGHPQPYPGANIPPPRYDGWHGSPVNNPQGGVWYRGPPQGGPPYRTPVAPGNFPMDPFLYYPQIPPGGLPNPHAPHGTGPRGPHPNTGDIYRPPMHDGFIHPGVSIRPGFYPGPVTYEGYYRPPMGYCNSNDRDAPFMGMPAGPSGPAGPAVYNRHLGQGKSASEPASSHGLSSGHGSSGKALVPEQVESDLPCDNQGPYKVLMQQGNLNGKNEEEENRVNPTTTNQLILEKADQQRASPWENDWDHKKEVDVRKRTFGVEPFAQASASHKAQSSENIEGKSCGSMRTGDGLLEKSDAAASGFSEVSKSLAPATKDSSLIQKIEGLNAKARASDVRHDDAPISSREESNELQSKDKHSDHFVAHEAGVSTVLPQNRDFNEVIDPASCELSLSTGDRNVKLYSGAPVHRRSNRGMQGRNDHHGRGKVNTQEVEGWHKRPILDSPGMIATPQESSVLARDHSALGAIDKPESFPSDSHGDVPAPSVGDSKDSQAQRTKMRELAKQRTKQLQEEEEERTRKQKARALAKLEELNRRTVAGEGPTQWSENASNDAIRNKIEEPRNVGNPRTIDMISGEHNTVSDLHVVANNSESTMGTNKNSPIVSENTSSKNQSSGNKEKVVAPIESRPIEQDAAQNKNVSGVNGGGASLKHKRTGNKQKPNTPSDKTEKLPHLVKESKSQTVVADIHSVVEESSNVTTDPVAESSTPTRKKHNKSGKNKHKVEEASISTSLPQVSKEATPTTEYDKQTASQSVMNPPSDPQLPINRDDNQFNLQQPLLSVVETHGKGNGQWKSQHSRRMPRNAQNKPGEKIHGGDSVVWAPVRSLNKCEVSIEAVQKNEAEAVASSVKIDNQVQNIPKNKRAEREIYVPKPVAKEMAQQGTFHQDFSPMNQAPDDNKADSSSQSSDNTRSSVAASGMGFSTDHRNGDGRHHKQSKAHASWRQRGGATEYGQGLQDQSSYASNAGSYVKKSSEYQVPEKPAGNSTSEFVSQIDEWDPPEGWNDPNYSASTPPVTAVLGRDRGVTGRGKRSQFKGHKGIGNNYDLNERKLKSGDHEKISSESSMPEVDQKDASAAAKESRGVGERSTSHWQPKSRMVQPHNHQGSKARGDQNVDADAAQTNKTGSSLSSHGTKTSDGVTQNHEEGASVGHHGFGGDKKISSRKDRPYSPTQGPIHNEEVAPANSDVRRQQQLPSFYHKGNEINNRFGRGSESRREMNLFQYHKQQQNFPPANRDRQRQNLQYEYQPVGPHNGKPNMDRPKDNTTQHSGSRYIERGQGQSRRDGGNFYKQEGGGPV 1553
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 417730 428893 + CmoCh11G000880.1 Cmo11g00088 390707

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00088 1553 Coils Coil 756 795 - -
Cmo11g00088 1553 MobiDBLite consensus disorder prediction 674 692 - -
Cmo11g00088 1553 MobiDBLite consensus disorder prediction 848 879 - -
Cmo11g00088 1553 MobiDBLite consensus disorder prediction 1299 1322 - -
Cmo11g00088 1553 PANTHER PROTEIN MODIFIER OF SNC1 1 1 1547 - -
Cmo11g00088 1553 MobiDBLite consensus disorder prediction 423 438 - -
Cmo11g00088 1553 MobiDBLite consensus disorder prediction 410 444 - -
Cmo11g00088 1553 MobiDBLite consensus disorder prediction 714 829 - -
Cmo11g00088 1553 MobiDBLite consensus disorder prediction 1140 1178 - -
Cmo11g00088 1553 MobiDBLite consensus disorder prediction 1407 1422 - -
Cmo11g00088 1553 MobiDBLite consensus disorder prediction 1133 1553 - -
Cmo11g00088 1553 MobiDBLite consensus disorder prediction 1236 1250 - -
Cmo11g00088 1553 MobiDBLite consensus disorder prediction 119 163 - -
Cmo11g00088 1553 MobiDBLite consensus disorder prediction 1209 1229 - -
Cmo11g00088 1553 MobiDBLite consensus disorder prediction 1441 1456 - -
Cmo11g00088 1553 MobiDBLite consensus disorder prediction 54 163 - -
Cmo11g00088 1553 MobiDBLite consensus disorder prediction 941 964 - -
Cmo11g00088 1553 MobiDBLite consensus disorder prediction 753 795 - -
Cmo11g00088 1553 MobiDBLite consensus disorder prediction 848 1074 - -
Cmo11g00088 1553 MobiDBLite consensus disorder prediction 1343 1400 - -
Cmo11g00088 1553 MobiDBLite consensus disorder prediction 329 352 - -
Cmo11g00088 1553 Pfam BAT2 N-terminus 12 137 IPR009738 -
Cmo11g00088 1553 PANTHER PROTEIN MODIFIER OF SNC1 1 1 1547 IPR038808 -
Cmo11g00088 1553 MobiDBLite consensus disorder prediction 985 1061 - -
Cmo11g00088 1553 MobiDBLite consensus disorder prediction 56 110 - -
Cmo11g00088 1553 MobiDBLite consensus disorder prediction 591 625 - -
Cmo11g00088 1553 MobiDBLite consensus disorder prediction 1477 1503 - -
Cmo11g00088 1553 MobiDBLite consensus disorder prediction 526 630 - -
Cmo11g00088 1553 MobiDBLite consensus disorder prediction 669 692 - -
Cmo11g00088 1553 MobiDBLite consensus disorder prediction 918 935 - -
Cmo11g00088 1553 MobiDBLite consensus disorder prediction 529 544 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00088 - - - mcha:111007408 2401.71
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo10g00123 Cmo11g00088 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00123 Cmo-Chr10:544542 Cmo11g00088 Cmo-Chr11:417730 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g781 . . . . . . . . . . Cma10g00119 Cma11g00088 Car10g00106 Car11g00079 Sed08g0103 . Cpe04g01566 Bhi02g00478 Tan09g2266 Cmetu02g1512 . Hepe09g0213 . . Cla06g01673 Cam06g1861 Cec06g1911 Cco06g1916 Clacu06g1817 Cmu06g1758 Cre06g2575 . . . . . . . . . Blo15g00262 . . Bpe07g00848 . . . . Cmo10g00123 Cmo11g00088 . . . . . Cpe18g00849 . . . . . . . . . . . . . . Lsi06g01564 Csa01g00136 Chy02g02591 Cme02g01988
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006102 0 1 1 0 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g00088 Cmo_Chr11 FPKM 18.418608 20.537878 18.788143 18.1574 16.368528 15.556863 16.905689 29.014629 26.168272 25.155682