Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00089 ATGGCGGATCTTTACGGACTCCATCCTCTCGCGGACTACTCCTACGAGTCCTCTTCAGCGGCTCCGTTGGACAACCTCCTCGTTCCGGTTAATTATCAGGCCTATTCTACTGCTTCTTCAGATTATTCTCATCCGCTTCAGGTTTTTGGATCGGGACACGTACCGTCGGTGTCGTCGGGGGACTACGATGCCGCTTTAGTGGCGGTTGTTTCCGAGGAGGAGTCTGCGGGTGCAATTAGAGAGAAAATTGCTTCTCATCCTCTTTACCCTAGACTTGTCGATGCGTTTGTTGACTGCCAAAAGATCGGTGCACCGCCGGAGGTCGCTAATATCCTAGGCAGAAGCCTTCGAGGAAGTGATATCGGCGAAAGAACTTCCAGCGTTTCAACTCGCTTGGGTGCCGATCCCGAGCTCGATGAGTTCATGGAAACATACTGCGGGATACTGGCGAAGTACAAGCTGGATCTCTCCCTGCCCTTTGTTGAAGCATCTTCCTTCCTCAACAACATGGAAACGCAGTTAAACAGGCTATGTAACGGCACCACCAGAGGCTACGTTTCCGGAGTCATGATAGATTGGTGTTTCCCGTTTATGATATCAGATGAAGCTGCTGCTGGTTCATCAGAAGAGGATGTAAGTGCCGGAGAAGTAGAATTGCAGGACTCTCTGTGGGCGAATGAAGATCGTGAGCTGAAGGATCGACTCCTACGCAAGTATGGTGGTTATCTTAGTAGCTTAAAGCAAGAATTTTCAAAAACTAAAAAGAAGGTAAAACTACCAAAAGAATCCAGACAGATCCTGCTTGACTGGTGGAACGTCCATTGCAAATGGCCTTACCCCACTGAGATGGACAAAATTGAGTTGGCGGAGTCGACAGGGCTTGACCCTAAACAAATTAACAACTGGTTCATAAACCAGAGAAAACGGCATTGGAAAGCATCAGAGAATATGCAATTTGTTGCTATGACTGTAGACAATATCTTGTCCCACGCTTCTCTTGAATGGAAGTTCTCTCAGGTCTTCGGCGAACGAGTTGCCGGAGAGGATATTCAGGATGTTGATATCATATCTGCAATTGGATTCGATAAGAGTGGTGATAACCTTGCCATTGGCGATCGAGGTGGTCGTGTTATTATATTTGAAAGAAACGACAGGAAGGATACTTCGAAAAATATCCATACTCGGAATAAGTTGGAGCAGTTGAATCTTACTCCTGCATCTCATCCTGAATACCAATACAAGACTGAATTTCAGAGTCATGAGCCTGAGTTTGATTACTTGAAGAGTTTGGAAATTGAAGAGAAGATTAATAAAGTAAAGTGGTGCGTATCACCCAATGGATCTCGCTTCATCCTTTCAACAAATGACAAAACTATTAAACTATGGAAGGTTAAGGAGCACAAGGCGAAAACCATTAAAGAGATGAACCATGATCAATATGTGAGTTCAGAAAATGCACTTTTGGCAGAGATGAGTTTCTCTAGCGAACAAGGAAAATTCTCTCTTTCCAGTGGCTGCCATCGGGATCTTTCAGAGAATACGGCGATGAATAAGGTAGCGTCTAAAGACATTAATGACATGATTCCTGATCTAGACGATACTTCTTGGAGAAGATGCCGAAAGGTGTATGGTCATGCTCATGATTTTAATATTAACTCCATTTCTAACAATAGTGATGGCGAGACGTTTATTTCTGCTGATGACTTGCGAATAAACTTATGGAACCTCGAGATTAGTAATCAGTGTTTCAATATCATTGACATGAAGCCTTCAAACATGGAAGATCTTACGGAGATCATAACGTCGGCTGAATTCCATCCTCTGCACTGTAATCTTCTTGCGTACAGTAGCTCAAGGGGCTTTATTCGTTTAGTGGATATGCGCCAGTCTGCATTATGTGATCATAGTGCAATTCTATTACGAGCCGAAGAATTGAGTCGACCAAAATCATTTTTTACGGAGATCATTTCTTCCATTTCGGATATAAAATTTTCAAGTGATGGGCGGTTCATCATTAGTCGGGATTACATGAATTTAAAGCTTTGGGATATCCATAAGGGTTCTTCTCCAGTCGCAGTTTTCAAGGTTCATGAGCACCTGCGACCTAGGTTGTGTGAGCTGTATGATAACGATTCCATATTTGATAGATTTGAATGTTGCCTAAGTGCAGACGGACTTCACTTTGCAACTGGATCTTATAGCAACCAATTACGGATGTTCTCTTATGGCTATGGAAGTGCGGAAGGGATCACTACTGAAGCGGGGAAAACTCCCGATAGGAAGCCAAATCTCCAAACCGCTAGGCGGGCTAGACGACGATCATCCTTAAGCAATTTGACACGTGATTTTTTTCGGCACGGCAATGAACATTCAAGCTCGGGAAGTAATGAAGCTTCTGTTGACCTGAACTCCAAGTTACTACATTTGGCGTGGCATCCAACAGAAAATTTAATCGCCTGTGCTACTGGAAGTGGCCTGTTCATGTATTATGCATAA 2496 43.79 MADLYGLHPLADYSYESSSAAPLDNLLVPVNYQAYSTASSDYSHPLQVFGSGHVPSVSSGDYDAALVAVVSEEESAGAIREKIASHPLYPRLVDAFVDCQKIGAPPEVANILGRSLRGSDIGERTSSVSTRLGADPELDEFMETYCGILAKYKLDLSLPFVEASSFLNNMETQLNRLCNGTTRGYVSGVMIDWCFPFMISDEAAAGSSEEDVSAGEVELQDSLWANEDRELKDRLLRKYGGYLSSLKQEFSKTKKKVKLPKESRQILLDWWNVHCKWPYPTEMDKIELAESTGLDPKQINNWFINQRKRHWKASENMQFVAMTVDNILSHASLEWKFSQVFGERVAGEDIQDVDIISAIGFDKSGDNLAIGDRGGRVIIFERNDRKDTSKNIHTRNKLEQLNLTPASHPEYQYKTEFQSHEPEFDYLKSLEIEEKINKVKWCVSPNGSRFILSTNDKTIKLWKVKEHKAKTIKEMNHDQYVSSENALLAEMSFSSEQGKFSLSSGCHRDLSENTAMNKVASKDINDMIPDLDDTSWRRCRKVYGHAHDFNINSISNNSDGETFISADDLRINLWNLEISNQCFNIIDMKPSNMEDLTEIITSAEFHPLHCNLLAYSSSRGFIRLVDMRQSALCDHSAILLRAEELSRPKSFFTEIISSISDIKFSSDGRFIISRDYMNLKLWDIHKGSSPVAVFKVHEHLRPRLCELYDNDSIFDRFECCLSADGLHFATGSYSNQLRMFSYGYGSAEGITTEAGKTPDRKPNLQTARRARRRSSLSNLTRDFFRHGNEHSSSGSNEASVDLNSKLLHLAWHPTENLIACATGSGLFMYYA 831
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 428955 439025 - CmoCh11G000890.1 Cmo11g00089 390708

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00089 831 SMART WD40_4 535 575 IPR001680 GO:0005515
Cmo11g00089 831 SMART WD40_4 687 741 IPR001680 GO:0005515
Cmo11g00089 831 SMART WD40_4 423 463 IPR001680 GO:0005515
Cmo11g00089 831 SMART WD40_4 645 683 IPR001680 GO:0005515
Cmo11g00089 831 SMART WD40_4 579 626 IPR001680 GO:0005515
Cmo11g00089 831 SMART WD40_4 346 381 IPR001680 GO:0005515
Cmo11g00089 831 SMART WD40_4 793 831 IPR001680 GO:0005515
Cmo11g00089 831 SUPERFAMILY Homeodomain-like 252 321 IPR009057 -
Cmo11g00089 831 ProSiteProfiles ELK domain profile. 230 250 IPR005539 GO:0003677
Cmo11g00089 831 Pfam ELK domain 230 251 IPR005539 GO:0003677
Cmo11g00089 831 Gene3D - 328 581 IPR015943 GO:0005515
Cmo11g00089 831 Gene3D - 583 825 IPR015943 GO:0005515
Cmo11g00089 831 SUPERFAMILY WD40 repeat-like 354 828 IPR036322 GO:0005515
Cmo11g00089 831 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 632 659 IPR000009 GO:0000159|GO:0019888
Cmo11g00089 831 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 547 574 IPR000009 GO:0000159|GO:0019888
Cmo11g00089 831 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 800 829 IPR000009 GO:0000159|GO:0019888
Cmo11g00089 831 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 603 631 IPR000009 GO:0000159|GO:0019888
Cmo11g00089 831 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 688 713 IPR000009 GO:0000159|GO:0019888
Cmo11g00089 831 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 439 467 IPR000009 GO:0000159|GO:0019888
Cmo11g00089 831 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 660 687 IPR000009 GO:0000159|GO:0019888
Cmo11g00089 831 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 575 602 IPR000009 GO:0000159|GO:0019888
Cmo11g00089 831 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 714 740 IPR000009 GO:0000159|GO:0019888
Cmo11g00089 831 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 360 380 IPR000009 GO:0000159|GO:0019888
Cmo11g00089 831 ProSitePatterns 'Homeobox' domain signature. 288 311 IPR017970 GO:0000981|GO:0006355
Cmo11g00089 831 Pfam Homeobox KN domain 270 309 IPR008422 GO:0003677|GO:0006355
Cmo11g00089 831 Pfam KNOX1 domain 78 114 IPR005540 GO:0003677|GO:0005634
Cmo11g00089 831 ProSiteProfiles 'Homeobox' domain profile. 250 313 IPR001356 GO:0003677
Cmo11g00089 831 Pfam KNOX2 domain 132 178 IPR005541 GO:0003677|GO:0005634
Cmo11g00089 831 PANTHER OS02G0617600 PROTEIN 329 831 - -
Cmo11g00089 831 SMART KNOX2_2 128 179 IPR005541 GO:0003677|GO:0005634
Cmo11g00089 831 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 1. 423 437 IPR018067 -
Cmo11g00089 831 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 329 831 IPR000009 GO:0000159|GO:0019888
Cmo11g00089 831 Gene3D - 247 320 - -
Cmo11g00089 831 CDD homeodomain 262 312 IPR001356 GO:0003677
Cmo11g00089 831 SMART KNOX1_2 77 121 IPR005540 GO:0003677|GO:0005634
Cmo11g00089 831 SMART HOX_1 252 317 IPR001356 GO:0003677
Cmo11g00089 831 MobiDBLite consensus disorder prediction 753 774 - -
Cmo11g00089 831 Pfam WD domain, G-beta repeat 538 575 IPR001680 GO:0005515
Cmo11g00089 831 SMART ELK_2 230 251 IPR005539 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00089 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B - csv:101206601 874.004
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01834 Cmo-Chr4:9211224 Cmo11g00089 Cmo-Chr11:428955 3.00E-95 dispersed
Cmo05g00037 Cmo-Chr5:133814 Cmo11g00089 Cmo-Chr11:428955 3.78E-83 dispersed
Cmo08g00726 Cmo-Chr8:4569148 Cmo11g00089 Cmo-Chr11:428955 0 dispersed
Cmo11g00089 Cmo-Chr11:428955 Cmo14g01305 Cmo-Chr14:10910216 0 dispersed
Cmo11g00089 Cmo-Chr11:428955 Cmo01g00072 Cmo-Chr1:305188 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g775 . . . . . . . Bma12g01043 . . . Cma11g00090 . Car11g00081 Sed08g0112 . Cpe04g01565 Bhi02g00459 Tan09g2259 Cmetu02g0570 . Hepe09g0209 . . Cla06g01669 Cam06g1857 Cec06g1905 Cco06g1911 Clacu06g1813 Cmu06g1754 Cre06g2572 . . . . . . . . . Blo15g00263 . . Bpe07g00846 . . . . . Cmo11g00089 . . . . . . . . . . . . . . . . . . . . . Csa01g00142 Chy02g02586 Cme02g01984
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007287 0 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 6 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10512 PF03791 KNOX2 9.00E-20 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g00089 Cmo_Chr11 FPKM 3.405956 3.531063 23.177017 21.44277 13.307914 12.972847 17.173096 25.580742 27.626606 29.794775