Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00097 ATGCCGGGAATTGTCGTGGATGAAATTAATGAAGAAAGGGCTGTGAATAAACATAACGGTGCTTCAGTTCATATGGAAGAGTCGTATGGAAACAAGTCGCCTAGGAGCGGGTTGAGTGTTCAGAGCCATGGAAGTGTTAATGTTGATTTCCCTGTTGATGGCTTGGTTGACACCTCTATTGAGAAGCTTTATGAAAATGTCTATGATATGCAAAGTTCAGATCAGTCTCCTTCAAGGCGTAGCTTTGGATCAGATGGTGGGGAATCCAGGATTGATTCCGAACTGAATCATCTTGTAGGAGGAGAGATGAGGGAGGTAGAGATAATAAAGGAGGAAGAAGACATTGTAGAGAGGACTGAAAATGATTTTCCCAGTGATTCTGTGAAAGATTTACCATCTGTAGAGAATAAGAACACAGAAAATTCCCAACCTGGAAGCTCAAGACGCCTTTCTTCTGGAAAAAAAGCTTCTCACTTGCAATTGGATCACGAGACATCTCCAAAATCAAGTCCCAGTGGCAAGGATTTGTCTGATAAGCCCCCTATTAGCAGAAAGAATGAAAAGAGTTCGAAAAAAACTAGTCCGGTTGCTTCTAACTCGAAGAAACAAAAAGATTCACCTTTGAGAGGCTCGAAAATACTTAATGGAACTGAGGATTTCAATGAATCAATGATGGATAATCCTGATCTAGGACCCTATCTGCTTAAGCAAGCTAGGAGTTTAGTTTCTTCAGGGGAGAATCTGCAGAAAGCTCTTTTATTAGCTCTCCGTGCTGCAAAAGCTTTTGAGCTATCTGCAAATGGGAAACCGAGCTTGGAACTCGTTATGTGTTTGCATGTTACAGCAGCTATTTACTGTAGTCTAGGCCAGTACAGTGAGGCAATTCCTCTGTTGGAGCATTCCATTGAGATTCCTGCCATCAAGGAAGGCCAGGAACATGCGCTGGCCAAATTTGCAGGTCACATGCAGCTAGGTGATACCTATGCAATGCTGGGCCTACTGGAAAATTCTCTAATCTGTTATACAACTGGGTTAGAGGTGCAGAAACAAGTCCTTGGAGAAGCAGACCCCAGAGTTGGTGAGACCTATAGGTATTTAGCCGAAGCCCATGTTCAAGCTTTGCAATTTGATGAGGCTGAGAAGTTTTGTCAAATGGCTCTCGATATACACAAAAAGAATGTCGGTCCTGCTTCTCTTGAGGAGGCTGCAGATAGGAGGCTTATGGGTCTCATATGTGAAACAAAAGGAGATCATGAAGCTGCGCTCGAGCATCTAGTTTTAGCCAGCATGGCTATGGTGGCAAATGGCCAAGAGACTGATGTGGCTGCAGTTGATTGCAGTATTGGAGATTCATACTTATCCCTGTCCCGTTACGACGAGGCTGTTTTTGCTTACCAGAAAGCTCTCACTGTTTTCAAGACCACCAAGGGAGAAAACCATCCAACAGTTGGTTCAGTATATATTCGTCTTGCTGATTTATACAACAAGACTGGAAAAACGAGGGAGTCGGTATCGTACTGTGAAAACGCCCTTCGAATTTATGAAAAGCCTATCCTTGGGATTCCTCCTGAGGAGATTGCTAGTGGTCTTACTAATGTTGCTGCTATTTATGAATCAATGAATGAAGCTGAGCAAGCAGTCAAATTATTACAAAAGGCACTGAAGATATATAGTAACGCCCCTGGACAGCAAAGCACCATTGCTGGAATTGAAGCCCAGATGGGTGTGTTGTATTATATGTTAGGGAGCTATTCTGAGTCTTATGACTCCTTCAAGAACGCAATTCCAAAGCTTCGCAACAGCGGAGAAAAAAAATCTGCTTTCTTTGGGATAGCTCTTAATCAAATGGGGCTTGCTTGTGTTCAGAAATATGCTATTAACGAAGCTGTGGAGCTATTTGAAGAAGCCAAGAGCATACTAGAACAAGAATACGGGCCTTATCATCCTGACACGCTCGGAGTCTATAGCAACCTTGCTGGAGCATATGATGCGATTGGCAGGTTGGATGATGCAATTGAAATGTTGGAGTATGTTGTTGGCATGAGAGAGGAAAAACTCGGGACTGCCAATCCTGATGTCGACGATGAGAAGAGGAGGTTGTCCGAGTTGTTGAAAGAAGCTGGTAGAGTTCGGAGCCGAAAGGCGAGATCGCTCGAGACTCTTCTTGATGCCAATACTCATCCTGTAAACAGTAAAGGGACTGTACCTGTAACTATGGTTGAAAAATCTTCTAGTTCGTCATCTATTCTGGTTGATCAGCCAGTTGTTCCAGGAGATGTGGTACTCGACCTCTCAAACATGACCAACGAAACCATCAAGCTTGGAGGCGGTCTTCGACAGGACCATGATGCTATTTCTGTCGCTAAAGTTGGAAAATTGAGGTTCTCAAAACCAAACAAATATTGGGTTGAAAGCTCGCAGAAAAGGAATTTTCTTGTTGACATAAAAGGTCCTTCATTGGCCTCTCTTCCTGTTCTTGCATTTGAAGGAGGAACAAGACGAAACATTCCCAAGTTCGAGATGGGTGCCCTTCTTTATGTGCGGGTGGTGAAGGTAAACCCTGGTATGAATCCCGAGCTGGCATGCACTGATGCTAGTGGGAAAGCAGCTGGATTTGGCCTCCTAAAGGATGGTTACATCTTTGACTGTTCAACTGGCTTATCAAGAATGCTTCTAAGCTCGCCAACATGTCCTGTTCTTGAATCTCTTGGGAAGAAGCTTTCATTCGAGACGGCAGTTGGTATAAATGGCCGAGTTTGGGTCAATGCAGATTCCCCGTCCACAACCATTGTTGTTTCTAATGCAATAATGAACTCAGAAACTCTGAGTGGGGTCCAACAGAGAATCATGGTGGACAAGCTCCTAAATAATTTAAAGCTATCAAGTTAA 2889 43.58 MPGIVVDEINEERAVNKHNGASVHMEESYGNKSPRSGLSVQSHGSVNVDFPVDGLVDTSIEKLYENVYDMQSSDQSPSRRSFGSDGGESRIDSELNHLVGGEMREVEIIKEEEDIVERTENDFPSDSVKDLPSVENKNTENSQPGSSRRLSSGKKASHLQLDHETSPKSSPSGKDLSDKPPISRKNEKSSKKTSPVASNSKKQKDSPLRGSKILNGTEDFNESMMDNPDLGPYLLKQARSLVSSGENLQKALLLALRAAKAFELSANGKPSLELVMCLHVTAAIYCSLGQYSEAIPLLEHSIEIPAIKEGQEHALAKFAGHMQLGDTYAMLGLLENSLICYTTGLEVQKQVLGEADPRVGETYRYLAEAHVQALQFDEAEKFCQMALDIHKKNVGPASLEEAADRRLMGLICETKGDHEAALEHLVLASMAMVANGQETDVAAVDCSIGDSYLSLSRYDEAVFAYQKALTVFKTTKGENHPTVGSVYIRLADLYNKTGKTRESVSYCENALRIYEKPILGIPPEEIASGLTNVAAIYESMNEAEQAVKLLQKALKIYSNAPGQQSTIAGIEAQMGVLYYMLGSYSESYDSFKNAIPKLRNSGEKKSAFFGIALNQMGLACVQKYAINEAVELFEEAKSILEQEYGPYHPDTLGVYSNLAGAYDAIGRLDDAIEMLEYVVGMREEKLGTANPDVDDEKRRLSELLKEAGRVRSRKARSLETLLDANTHPVNSKGTVPVTMVEKSSSSSSILVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRNFLVDIKGPSLASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYIFDCSTGLSRMLLSSPTCPVLESLGKKLSFETAVGINGRVWVNADSPSTTIVVSNAIMNSETLSGVQQRIMVDKLLNNLKLSS 962
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 516889 524262 - CmoCh11G000970.1 Cmo11g00097 390716

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00097 962 MobiDBLite consensus disorder prediction 69 98 - -
Cmo11g00097 962 ProSiteProfiles TPR repeat profile. 527 560 IPR019734 GO:0005515
Cmo11g00097 962 Coils Coil 540 560 - -
Cmo11g00097 962 MobiDBLite consensus disorder prediction 15 45 - -
Cmo11g00097 962 MobiDBLite consensus disorder prediction 131 154 - -
Cmo11g00097 962 MobiDBLite consensus disorder prediction 69 83 - -
Cmo11g00097 962 Gene3D Tetratricopeptide repeat domain 641 726 IPR011990 GO:0005515
Cmo11g00097 962 SUPERFAMILY Nucleic acid-binding proteins 803 876 IPR012340 -
Cmo11g00097 962 Gene3D K Homology domain, type 1 874 957 IPR036612 GO:0003723
Cmo11g00097 962 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 1 725 - -
Cmo11g00097 962 Gene3D Tetratricopeptide repeat domain 430 610 IPR011990 GO:0005515
Cmo11g00097 962 SUPERFAMILY TPR-like 320 425 IPR011990 GO:0005515
Cmo11g00097 962 Gene3D - 807 873 IPR012340 -
Cmo11g00097 962 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 877 959 IPR036612 GO:0003723
Cmo11g00097 962 SUPERFAMILY TPR-like 438 561 IPR011990 GO:0005515
Cmo11g00097 962 SUPERFAMILY TPR-like 567 709 IPR011990 GO:0005515
Cmo11g00097 962 MobiDBLite consensus disorder prediction 110 225 - -
Cmo11g00097 962 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 1 725 - -
Cmo11g00097 962 SUPERFAMILY Ribosomal L27 protein-like 748 808 - -
Cmo11g00097 962 Pfam KH domain 878 926 IPR004088 GO:0003723
Cmo11g00097 962 Gene3D - 741 806 - -
Cmo11g00097 962 MobiDBLite consensus disorder prediction 110 125 - -
Cmo11g00097 962 Coils Coil 693 713 - -
Cmo11g00097 962 SUPERFAMILY TPR-like 220 304 IPR011990 GO:0005515
Cmo11g00097 962 Gene3D Tetratricopeptide repeat domain 272 429 IPR011990 GO:0005515
Cmo11g00097 962 Pfam Tetratricopeptide repeat 530 558 IPR019734 GO:0005515
Cmo11g00097 962 SMART tpr_5 568 601 IPR019734 GO:0005515
Cmo11g00097 962 SMART tpr_5 527 560 IPR019734 GO:0005515
Cmo11g00097 962 SMART tpr_5 610 643 IPR019734 GO:0005515
Cmo11g00097 962 SMART tpr_5 442 475 IPR019734 GO:0005515
Cmo11g00097 962 SMART tpr_5 318 351 IPR019734 GO:0005515
Cmo11g00097 962 SMART tpr_5 360 393 IPR019734 GO:0005515
Cmo11g00097 962 SMART tpr_5 652 685 IPR019734 GO:0005515
Cmo11g00097 962 SMART tpr_5 275 308 IPR019734 GO:0005515
Cmo11g00097 962 SMART tpr_5 484 517 IPR019734 GO:0005515
Cmo11g00097 962 Pfam Tetratricopeptide repeat 323 392 - -
Cmo11g00097 962 Pfam Tetratricopeptide repeat 441 516 - -
Cmo11g00097 962 Pfam Tetratricopeptide repeat 611 678 - -
Cmo11g00097 962 ProSiteProfiles TPR repeat profile. 442 475 IPR019734 GO:0005515
Cmo11g00097 962 Pfam Tetratricopeptide repeat 282 304 IPR019734 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00097 - - - bhj:120070989 1295.41
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo10g00132 Cmo11g00097 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00097 Cmo-Chr11:516889 Cmo16g00575 Cmo-Chr16:2778554 0 dispersed
Cmo11g00097 Cmo-Chr11:516889 Cmo10g00132 Cmo-Chr10:597207 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g740 . . Bda06g00593 . . . Bma06g00233 . . . Cma10g00126 Cma11g00097 Car10g00117 Car11g00097 . . Cpe04g01552 Bhi02g00439 Tan09g2242 . . Hepe09g0198 . . Cla06g01660 Cam06g1845 Cec06g1896 Cco06g1901 Clacu06g1804 Cmu06g1745 Cre06g2564 Cone2ag0905 Cone16ag0107 . . . . . . . Blo15g00269 Bda11g01660 . Bpe07g00835 . . . . Cmo10g00132 Cmo11g00097 . . . . . Cpe18g00843 . . . . . . . . . . . . . . Lsi06g01550 Csa01g00154 Chy02g02576 Cme02g01966
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003461 3 3 3 3 3 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 1 2 2 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g00097 Cmo_Chr11 FPKM 17.602852 20.553421 21.880693 22.713604 21.073137 18.935295 21.700281 38.511612 36.417465 36.918591