Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00101 ATGGCTACTCGAGGCGTCGATTTCAAGTGGTATGACGGTTTTTTCTTGTCGATGCTCGCGACTAGTGTAGTAATAGTTTCGATCAGTTGGAAGAGGTATCATACTTGTGTACATCCCTTGCATATATGGATTGTGGTTGATTACACTGCCGTCTTTCTTTTTCGCCTGCTGATGTTTGTAGACAATGGACTTGCCGCTGGAATGGGTTTGGACTTTGGGTGGCAGCAGAGATATGCTCGATTTTGTGGAAGAATTGTGGTCCTTTCAGTCCTAGCGCTTCTGCTATTTCCATTTCTTTGGGTTTGGACTGCCATTGGTACTTTATGGTTTAAGCAGGCCCATAATTGTCTTCCTGAGCAAGGTCAGAAATGGGGATTCCTAATTTGGTTGCTTTTTAGCTACTGTGCCCTCGTATGCATTGCTTGCATGTCATTGGGAAAGTGGTTAACTCGTAGACAAGCACTCTTGTTTCGGGCACAACAAGGGATCCCTGTATCAGAATATGGGGTCTTGGTTGACATGATCCGAGTACCTGATTGGGCTTTTGAAGCTGCAGGAATAGAAACAAGGGTAATGGGTCAAGATGCTGCTACCTACCATCCTCATCCCGGACTTTACTTGACTCCAGCTCAGAGGGAAGCTGTGGAGGCACTTATTGAGGAACTTCCCAAATTCAGGTTAAAGGCTGTTCCAACAGATTGCAGTGAATGCCCTATCTGCTTAGAAGAGTTCCATGAAGGGAATGAGGTTCGTGGCCTCCCTTGTGCTCATAATTTCCATGTAGGATGTATTGACGAGTGGCTTCGACTGAATGTGAAATGCCCTAGATGTCGTTGCTCGGTCTTCCCGAACCTTGACCTCAGTGCTCTGTCCAATCTTCGTTCTGATACCGATAGGCCTTCTGCAAGTGTTGTTACAGCCAATAGCTATATGATATCTCATCCTTTGAGCCAAAGTTATCTAGTGAGACTGCAGGGTCTGCTTCGACCTGTTCGCACAGAAAACACGGGTACACATGGTGATTTAGAATCTGCTAGTGCTGTGGAAGTTACTGAGAATGGGTCCGCCCATGACCAAACTATACCAGAACGGTCTCCCGTAAGACCCATGCCTTTAAGTCAGTCTACACCACAACTCTAG 1140 46.23 MATRGVDFKWYDGFFLSMLATSVVIVSISWKRYHTCVHPLHIWIVVDYTAVFLFRLLMFVDNGLAAGMGLDFGWQQRYARFCGRIVVLSVLALLLFPFLWVWTAIGTLWFKQAHNCLPEQGQKWGFLIWLLFSYCALVCIACMSLGKWLTRRQALLFRAQQGIPVSEYGVLVDMIRVPDWAFEAAGIETRVMGQDAATYHPHPGLYLTPAQREAVEALIEELPKFRLKAVPTDCSECPICLEEFHEGNEVRGLPCAHNFHVGCIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRSDTDRPSASVVTANSYMISHPLSQSYLVRLQGLLRPVRTENTGTHGDLESASAVEVTENGSAHDQTIPERSPVRPMPLSQSTPQL 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 539352 543306 - CmoCh11G001010.1 Cmo11g00101 390720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00101 379 ProSiteProfiles Zinc finger RING-type profile. 237 278 IPR001841 -
Cmo11g00101 379 MobiDBLite consensus disorder prediction 334 379 - -
Cmo11g00101 379 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 358 - -
Cmo11g00101 379 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 358 IPR044793 GO:0004842|GO:0010182
Cmo11g00101 379 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 206 283 IPR013083 -
Cmo11g00101 379 Pfam Ring finger domain 236 278 IPR001841 -
Cmo11g00101 379 SUPERFAMILY RING/U-box 219 286 - -
Cmo11g00101 379 CDD RING-H2_RNF111_like 236 280 - -
Cmo11g00101 379 MobiDBLite consensus disorder prediction 337 360 - -
Cmo11g00101 379 SMART ring_2 237 277 IPR001841 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo11g00101 Cmo18g00124 CCT
Cmo10g00136 Cmo11g00101 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00101 Cmo-Chr11:539352 Cmo14g02075 Cmo-Chr14:15111582 1.53E-12 dispersed
Cmo10g00136 Cmo-Chr10:625356 Cmo11g00101 Cmo-Chr11:539352 0 wgd
Cmo11g00101 Cmo-Chr11:539352 Cmo13g00922 Cmo-Chr13:8143395 1.81E-167 wgd
Cmo11g00101 Cmo-Chr11:539352 Cmo18g00124 Cmo-Chr18:879086 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00101 K16284 - csv:101208939 705.286