Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00102 ATGAAGGACAACAATGATGGGTTTGTGCGAGCGGATCAGATTGATCTCAAGAGCTTGGATGAGCAGCTTGAGAGGCATCTCAACAGAGCCTTGACGATGGAGAAGAACAAAAAGAAAGATGAAGATGGTAACAGCTTTCTCACTTCCGCTGCCATGGCTCGCAGTAGGTCTACTAAAGTCGCTGCTAAGGAGCGGCTGGAGTGGGAGATCGATCCGTCCAAACTGATAATCAAGAGCGTCATTGCTCGTGGTACTTTCGGCACCGTCCACCGCGGCGTTTACGACGGACTAGATGTCGCCGTCAAGATGCTGGATTGGGGAGAAGAGGGTCACAGGACAGAAGCTGAAATTTCTTCACTAAGGGCAGCTTTCAAACAGGAAGTTGCTGTTTGGCATAAACTCGAGCATCCCAATGTTACTAAGTTTATAGGAGCAACAATGGGCTCAGCGGAGTTACAGATCCAAACTGAAAATGGTCTAATAGGCATGCCAAGTAACATATGTTGTGTTGTGGTGGAATATCTCGCTGGAGGTGCCCTAAAATCTTATCTCATAAAGAACAGGAGAAGGAAGCTAGCTTTCAAGGTGGTTGTCCAGTTGGCACTTGATCTTGCTAGAGGGTTGAGTTACCTTCATTCACAGAAGATCGTTCACAGAGATGTAAAGACAGAAAACATGCTGCTGGACAAAACACGTACGGTTAAAATTGCTGATTTTGGCGTTGCTAGAGTTGAGGCCTCAAATCCCAACGACATGACCGGGGAGACTGGGACACTTGGTTACATGGCTCCTGAGGTATGCACTTTTCGGTCAGCTCTACAACATTTAGGTGCATTGGCCATAAAATGTTTCCTTTTTGATTCCATAGTTGTGTCGCTCATTCCTTACATGGAAACCAAAAAACTTCAATGCCAAAAATGTAGCTATCAAACACATCAGAATGATGATTTTGCTAAAGTTATAGCGCTCTTCTGGTTACAGGTTCTCAATGGCAACCCATATAACAGGAAGTGTGACGTGTACAGTTTCGGTATCTGCCTTTGGGAAATTTATTGCTGTGACATGCCATATCCCGACCTTAGTTTCTCCGAAGTGACTTCTGCTGTGGTTCGTCAGTTCTTCATATCTGCAGACAATGTGCGCTTGAGAAGAAATCATTCCATTGTTTTCAACCTATCATTAACTCTCCTGAAAATGGTAATTTCAAAACTGCAGAATCTGAGGCCAGAAATACCGAGATGTTGCCCGAGCTCTCTAGCAAATGTGATGAAGCGATGCTGGGATGCAACCCCGGACAAGCGGCCCGAGATGGACGAAGTAGTTTCCATGTTGGAGGCCATTGACACATCCAAGGGTGGAGGTATGATCCCTGTTGATCAAACTCAAGGTTGTCTATGCTTTCGAAAATATAGAGGGCCTTAA 1422 45.29 MKDNNDGFVRADQIDLKSLDEQLERHLNRALTMEKNKKKDEDGNSFLTSAAMARSRSTKVAAKERLEWEIDPSKLIIKSVIARGTFGTVHRGVYDGLDVAVKMLDWGEEGHRTEAEISSLRAAFKQEVAVWHKLEHPNVTKFIGATMGSAELQIQTENGLIGMPSNICCVVVEYLAGGALKSYLIKNRRRKLAFKVVVQLALDLARGLSYLHSQKIVHRDVKTENMLLDKTRTVKIADFGVARVEASNPNDMTGETGTLGYMAPEVCTFRSALQHLGALAIKCFLFDSIVVSLIPYMETKKLQCQKCSYQTHQNDDFAKVIALFWLQVLNGNPYNRKCDVYSFGICLWEIYCCDMPYPDLSFSEVTSAVVRQFFISADNVRLRRNHSIVFNLSLTLLKMVISKLQNLRPEIPRCCPSSLANVMKRCWDATPDKRPEMDEVVSMLEAIDTSKGGGMIPVDQTQGCLCFRKYRGP 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 544268 547797 + CmoCh11G001020.1 Cmo11g00102 390721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00102 473 Gene3D Phosphorylase Kinase; domain 1 64 158 - -
Cmo11g00102 473 ProSitePatterns Serine/Threonine protein kinases active-site signature. 216 228 IPR008271 GO:0004672|GO:0006468
Cmo11g00102 473 Pfam Protein tyrosine and serine/threonine kinase 405 444 IPR001245 GO:0004672|GO:0006468
Cmo11g00102 473 Pfam Protein tyrosine and serine/threonine kinase 326 371 IPR001245 GO:0004672|GO:0006468
Cmo11g00102 473 Pfam Protein tyrosine and serine/threonine kinase 77 269 IPR001245 GO:0004672|GO:0006468
Cmo11g00102 473 SUPERFAMILY Protein kinase-like (PK-like) 66 448 IPR011009 -
Cmo11g00102 473 Gene3D Transferase(Phosphotransferase) domain 1 176 461 - -
Cmo11g00102 473 PANTHER - 404 467 - -
Cmo11g00102 473 PANTHER - 1 267 - -
Cmo11g00102 473 PANTHER - 327 373 - -
Cmo11g00102 473 Coils Coil 16 36 - -
Cmo11g00102 473 CDD STKc_MAP3K-like 81 444 - -
Cmo11g00102 473 PIRSF ILK 287 374 - -
Cmo11g00102 473 PIRSF ILK 396 453 - -
Cmo11g00102 473 PIRSF ILK 40 275 - -
Cmo11g00102 473 ProSiteProfiles Protein kinase domain profile. 75 447 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo11g00102 473 SMART serkin_6 75 447 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo11g00102 473 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 404 467 - -
Cmo11g00102 473 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 1 267 - -
Cmo11g00102 473 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 327 373 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo10g00138 Cmo11g00102 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00102 Cmo-Chr11:544268 Cmo17g01175 Cmo-Chr17:9450541 1.03E-56 dispersed
Cmo10g00138 Cmo-Chr10:636719 Cmo11g00102 Cmo-Chr11:544268 0 wgd
Cmo11g00102 Cmo-Chr11:544268 Cmo11g01694 Cmo-Chr11:11996809 1.41E-71 wgd
Cmo11g00102 Cmo-Chr11:544268 Cmo14g00661 Cmo-Chr14:3358166 1.49E-34 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74640 PF07714 PK_Tyr_Ser-Thr 9.40E-36 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00102 - - csv:101209182 507.679