Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo11g00102 | ATGAAGGACAACAATGATGGGTTTGTGCGAGCGGATCAGATTGATCTCAAGAGCTTGGATGAGCAGCTTGAGAGGCATCTCAACAGAGCCTTGACGATGGAGAAGAACAAAAAGAAAGATGAAGATGGTAACAGCTTTCTCACTTCCGCTGCCATGGCTCGCAGTAGGTCTACTAAAGTCGCTGCTAAGGAGCGGCTGGAGTGGGAGATCGATCCGTCCAAACTGATAATCAAGAGCGTCATTGCTCGTGGTACTTTCGGCACCGTCCACCGCGGCGTTTACGACGGACTAGATGTCGCCGTCAAGATGCTGGATTGGGGAGAAGAGGGTCACAGGACAGAAGCTGAAATTTCTTCACTAAGGGCAGCTTTCAAACAGGAAGTTGCTGTTTGGCATAAACTCGAGCATCCCAATGTTACTAAGTTTATAGGAGCAACAATGGGCTCAGCGGAGTTACAGATCCAAACTGAAAATGGTCTAATAGGCATGCCAAGTAACATATGTTGTGTTGTGGTGGAATATCTCGCTGGAGGTGCCCTAAAATCTTATCTCATAAAGAACAGGAGAAGGAAGCTAGCTTTCAAGGTGGTTGTCCAGTTGGCACTTGATCTTGCTAGAGGGTTGAGTTACCTTCATTCACAGAAGATCGTTCACAGAGATGTAAAGACAGAAAACATGCTGCTGGACAAAACACGTACGGTTAAAATTGCTGATTTTGGCGTTGCTAGAGTTGAGGCCTCAAATCCCAACGACATGACCGGGGAGACTGGGACACTTGGTTACATGGCTCCTGAGGTATGCACTTTTCGGTCAGCTCTACAACATTTAGGTGCATTGGCCATAAAATGTTTCCTTTTTGATTCCATAGTTGTGTCGCTCATTCCTTACATGGAAACCAAAAAACTTCAATGCCAAAAATGTAGCTATCAAACACATCAGAATGATGATTTTGCTAAAGTTATAGCGCTCTTCTGGTTACAGGTTCTCAATGGCAACCCATATAACAGGAAGTGTGACGTGTACAGTTTCGGTATCTGCCTTTGGGAAATTTATTGCTGTGACATGCCATATCCCGACCTTAGTTTCTCCGAAGTGACTTCTGCTGTGGTTCGTCAGTTCTTCATATCTGCAGACAATGTGCGCTTGAGAAGAAATCATTCCATTGTTTTCAACCTATCATTAACTCTCCTGAAAATGGTAATTTCAAAACTGCAGAATCTGAGGCCAGAAATACCGAGATGTTGCCCGAGCTCTCTAGCAAATGTGATGAAGCGATGCTGGGATGCAACCCCGGACAAGCGGCCCGAGATGGACGAAGTAGTTTCCATGTTGGAGGCCATTGACACATCCAAGGGTGGAGGTATGATCCCTGTTGATCAAACTCAAGGTTGTCTATGCTTTCGAAAATATAGAGGGCCTTAA | 1422 | 45.29 | MKDNNDGFVRADQIDLKSLDEQLERHLNRALTMEKNKKKDEDGNSFLTSAAMARSRSTKVAAKERLEWEIDPSKLIIKSVIARGTFGTVHRGVYDGLDVAVKMLDWGEEGHRTEAEISSLRAAFKQEVAVWHKLEHPNVTKFIGATMGSAELQIQTENGLIGMPSNICCVVVEYLAGGALKSYLIKNRRRKLAFKVVVQLALDLARGLSYLHSQKIVHRDVKTENMLLDKTRTVKIADFGVARVEASNPNDMTGETGTLGYMAPEVCTFRSALQHLGALAIKCFLFDSIVVSLIPYMETKKLQCQKCSYQTHQNDDFAKVIALFWLQVLNGNPYNRKCDVYSFGICLWEIYCCDMPYPDLSFSEVTSAVVRQFFISADNVRLRRNHSIVFNLSLTLLKMVISKLQNLRPEIPRCCPSSLANVMKRCWDATPDKRPEMDEVVSMLEAIDTSKGGGMIPVDQTQGCLCFRKYRGP | 473 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 544268 | 547797 | + | CmoCh11G001020.1 | Cmo11g00102 | 390721 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo11g00102 | 473 | Gene3D | Phosphorylase Kinase; domain 1 | 64 | 158 | - | - | |
Cmo11g00102 | 473 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 216 | 228 | IPR008271 | GO:0004672|GO:0006468 | |
Cmo11g00102 | 473 | Pfam | Protein tyrosine and serine/threonine kinase | 405 | 444 | IPR001245 | GO:0004672|GO:0006468 | |
Cmo11g00102 | 473 | Pfam | Protein tyrosine and serine/threonine kinase | 326 | 371 | IPR001245 | GO:0004672|GO:0006468 | |
Cmo11g00102 | 473 | Pfam | Protein tyrosine and serine/threonine kinase | 77 | 269 | IPR001245 | GO:0004672|GO:0006468 | |
Cmo11g00102 | 473 | SUPERFAMILY | Protein kinase-like (PK-like) | 66 | 448 | IPR011009 | - | |
Cmo11g00102 | 473 | Gene3D | Transferase(Phosphotransferase) domain 1 | 176 | 461 | - | - | |
Cmo11g00102 | 473 | PANTHER | - | 404 | 467 | - | - | |
Cmo11g00102 | 473 | PANTHER | - | 1 | 267 | - | - | |
Cmo11g00102 | 473 | PANTHER | - | 327 | 373 | - | - | |
Cmo11g00102 | 473 | Coils | Coil | 16 | 36 | - | - | |
Cmo11g00102 | 473 | CDD | STKc_MAP3K-like | 81 | 444 | - | - | |
Cmo11g00102 | 473 | PIRSF | ILK | 287 | 374 | - | - | |
Cmo11g00102 | 473 | PIRSF | ILK | 396 | 453 | - | - | |
Cmo11g00102 | 473 | PIRSF | ILK | 40 | 275 | - | - | |
Cmo11g00102 | 473 | ProSiteProfiles | Protein kinase domain profile. | 75 | 447 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo11g00102 | 473 | SMART | serkin_6 | 75 | 447 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo11g00102 | 473 | PANTHER | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED | 404 | 467 | - | - | |
Cmo11g00102 | 473 | PANTHER | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED | 1 | 267 | - | - | |
Cmo11g00102 | 473 | PANTHER | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED | 327 | 373 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo10g00138 | Cmo11g00102 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo11g00102 | Cmo-Chr11:544268 | Cmo17g01175 | Cmo-Chr17:9450541 | 1.03E-56 | dispersed | |
Cmo10g00138 | Cmo-Chr10:636719 | Cmo11g00102 | Cmo-Chr11:544268 | 0 | wgd | |
Cmo11g00102 | Cmo-Chr11:544268 | Cmo11g01694 | Cmo-Chr11:11996809 | 1.41E-71 | wgd | |
Cmo11g00102 | Cmo-Chr11:544268 | Cmo14g00661 | Cmo-Chr14:3358166 | 1.49E-34 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
74640 | PF07714 | PK_Tyr_Ser-Thr | 9.40E-36 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo11g00102 | - | - | csv:101209182 | 507.679 |