Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00105 ATGGCTGCTCGGAGAGGAATCTGTTCTTTACTATCTCGTTCTCTGTTATCATCTTCTTGTTCTTGTTCTTCTTCTTGTTCTTCTGGTTATGGGTTTGGTTCTTTTCTCCAATCTCGTGGTAGAGTTTCAAGGTTGCATGGAATAGGGAGAAGATTCAGCTCATCTGCTTTGGCGGAGGAGGAACTTGTTACTCCTCCTGTTCAGATAAGTTACACTCAGAATCTGATTAATGGGCAGTTTGTGGATGCTGCATCAGGGAAAACGTTTCCGACCTACGATCCTCGCACCGGGGAAGTGATTGCTCATGTTGCCGAGGGCGAGGCGGAGGATATCAACCGGGCAGTATCGGCAGCTCGCAAGGCTTTCGACGAGGGGAAATGGCCGAAGATGACTGCTTATGAACGATCGAGGATATTACTGCGGTTCGCTGATTTGGTTGAGAAGCATAGCGCTGAGCTTGCAGCATTGGAGACATGGAACAATGGCAAACCTTATGAACAATCGGCTCGGACCGAAATACCTATATTCGTGCGCTTGTTTCACTATTACGCCGGGTGGGCGGACAAAATCCATGGCTTGACCGTTCCAGCTGATGGGAAATATCATGTGCAAGTATTACATGAACCAATTGGAGTTGCAGGACAGATAATTCCATGGAACTTTCCTCTCCTTATGTTTGCTTGGAAAGTTGGTCCTGCTCTAGCCTGTGGCAACACCATTGTCCTAAAAACTGCAGAGCAAACGCCTCTGACCGCTCTTTATGTCGCGAAGTTATTCCACGAGGCTGGTCTTCCTCCAGGAGTTCTGAATGTCGTTTCGGGCTATGGTCCAACCGCGGGTGCTGCCCTTGCTAGCCATATGGATGTGGACAAGCTAGCCTTTACAGGATCGACGAACACGGGAAAAGTTGTGCTCGAATTGGCATCTAAAAGCAATTTGAAACCGGTAACGCTCGAACTTGGAGGGAAATCGCCTTTCATCGTTTGTGAGGATGCAGATGTTGATAAGGCCGTGGAGCTTGCTCATTTTGCTCTTTTTTTCAATCAGGGGCAATGTTGCTGTGCTGGATCCCGTACTTTTGTGCATGAGCGTATATACGACGAGTTTGTCGAGAAGTCGAGGGCACGTGCCCAAAGACGTGTGGTTGGTGATCCTTTCAAGAAGGGTGTTGAACAAGGTCCTCAGATCGACTCGGAGCAATTTGCAAAAGTCCTAAGATACATAAAATCTGGCATTGAAAGTGATGCTACTTTGGAATGTGGGGGTGACAGACTTGGGTCCAAGGGATACTTCGTCCAGCCGACAGTTTTCTCAAATGTTAAGGACGATATGTTGATAGCAAAGGACGAAATCTTTGGCCCGGTACAATCCATCTTGAAATTCAAGGACATTGATGAAGTTATTCAAAGGGCAAATGCAACTCGTTACGGTCTAGCTGCTGGAGTTTTCACTACAAACCTCGACACAGCCAACACCATAACACGAGGATTGAGAACAGGGACGGTGTGGGTGAATTGCTTCGACGTATTTGACGCTGCAATACCGTTTGGTGGGTATAAGATGAGCGGAATGGGGAGGGAGAAAGGAATTTACAGCCTCCAAAACTACTTGCAGGTGAAGGCTGTAGTTACTCCTCTGAAGAATCCAGCATGGTTATGA 1659 47.38 MAARRGICSLLSRSLLSSSCSCSSSCSSGYGFGSFLQSRGRVSRLHGIGRRFSSSALAEEELVTPPVQISYTQNLINGQFVDAASGKTFPTYDPRTGEVIAHVAEGEAEDINRAVSAARKAFDEGKWPKMTAYERSRILLRFADLVEKHSAELAALETWNNGKPYEQSARTEIPIFVRLFHYYAGWADKIHGLTVPADGKYHVQVLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTIVLKTAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLAFTGSTNTGKVVLELASKSNLKPVTLELGGKSPFIVCEDADVDKAVELAHFALFFNQGQCCCAGSRTFVHERIYDEFVEKSRARAQRRVVGDPFKKGVEQGPQIDSEQFAKVLRYIKSGIESDATLECGGDRLGSKGYFVQPTVFSNVKDDMLIAKDEIFGPVQSILKFKDIDEVIQRANATRYGLAAGVFTTNLDTANTITRGLRTGTVWVNCFDVFDAAIPFGGYKMSGMGREKGIYSLQNYLQVKAVVTPLKNPAWL 552
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 548605 551653 - CmoCh11G001050.1 Cmo11g00105 390724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00105 552 CDD ALDH_F2BC 69 544 - -
Cmo11g00105 552 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 324 513 IPR016163 GO:0016620
Cmo11g00105 552 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 48 552 - -
Cmo11g00105 552 PANTHER ALDEHYDE DEHYDROGENASE FAMILY 2 MEMBER B4, MITOCHONDRIAL 48 552 - -
Cmo11g00105 552 SUPERFAMILY ALDH-like 68 546 IPR016161 GO:0016491
Cmo11g00105 552 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 86 542 IPR016162 GO:0016491
Cmo11g00105 552 Pfam Aldehyde dehydrogenase family 80 542 IPR015590 GO:0016491
Cmo11g00105 552 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 346 357 IPR016160 GO:0016491
Cmo11g00105 552 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 318 325 IPR029510 GO:0016491
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00005 Cmo-Chr5:19024 Cmo11g00105 Cmo-Chr11:548605 0 dispersed
Cmo10g00162 Cmo-Chr10:733141 Cmo11g00105 Cmo-Chr11:548605 3.29E-115 dispersed
Cmo11g00105 Cmo-Chr11:548605 Cmo11g00602 Cmo-Chr11:2906497 0 dispersed
Cmo12g01175 Cmo-Chr12:10631579 Cmo11g00105 Cmo-Chr11:548605 1.19E-57 dispersed
Cmo11g00105 Cmo-Chr11:548605 Cmo12g00001 Cmo-Chr12:477 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00105 K00128 - csv:101209430 976.467