Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo11g00107 | ATGCTGTCGAGTTCTTGCTTGAGTTTGTTAGAGTTGTCATCTGTGGATATGTTGGATTTTCCTCCTACACCGAGAAATGTTCCACGGACGATGACTGCGTCGGGGATAGTATCCGATAAATGTCGAGGGAGGACGATAATAGTGGCGAATTTCCTTCCTGTTCATGCTAAAATGGATCCAGATTCTGGGAGATGGAACTTTAGCTTCGACGACGATTCGCTTTTGCTTCAGCTGAAAGATGGATTCTCATCAGATGTTGATGTTGTTTATGTTGGATCATTGAAGGTTGATGTCAATGTCCAAGAACAAGAAGAGATTTCGCAGAAACTACTGGAGGAATTCAACTGTGTACCGACTTTCGTCCCGACGTCCCTTCAGAAACAGTTCTATCATGGATTCTGTAAACAAAATCTATGGCCACTTTTCCATTACATGATGCCGATTTCGTCTTATCAGGGATCTCGCTTTGATCGACCTCTTTGGTTAGCGTATCTTTCAGCTAACAAAAGGTTTGCTGATAAAGTTATGGAGGTGATCAATTTGGAAGAAGATTATGTATGGATTCATGACTATCACCTTATGGTTCTCCCTACCTTTTTGAGAAAACGTTACAGTCGAATTAAGCTCGGATTCTTTCTTCATAGTCCGTTTCCCTCATCAGAGATCTTCCGAACTCTGCCTGTTAGAGATGAGATTCTGAAAGCGTTACTTAACACGGACCTAATCGGCTTCCATACGTTCAGCTATGCCCATCACTTTCTATCATGTTGTAGTAGACTGCTCGGTTTGGAGTATGAATCGAAACGTGGCTATCTCACGCTTGACTATTTCGGACGTACGATATACATCAAGATTTTGCCTGTTGGAGTTCATATGGGTCGACTCGAATTCGCATTAAATCATTCCCACACTTCAATCAAAGCCAAGGAGATCAAAGAAAACTTCAAAGGAAAGAAGCTTATTCTTGGTGTTGATGATATGGACATATTTAAAGGTATTGGTCTGAAGTTATTAGCTATGGAAAAGCTGTTGAACCAGCATCCGGAGTTGCGGGGCAATGTCGTTCTGGTGCAAATTCTGAATCCTGCACGGAGCAATGGGAACGACGTCCTCGAAGCGAAAAGGGAAACTTACGAGATAACCAAAAGGATTAACAAGGTTTTCGGTTTTCGGGGATATGAACCTGTGATCTTGATTGATCATCCTATTCCTTTCCATGAGAAGATTGCATATTATGTATTAGCAGAGTGCTGCATTGTAAATGCTCTCAGGGATGGTATGAACTTAGTTCCATACGAGTACATTGTTTGTCGACAGGGAACTTCTCAAATCGACGAAGTTTTGGATGTCTCCCCGGATTCACCTCATACCAGCACGATTGTCGTGTCGGAATTCATAGGTTGTTCGCCATCTCTAAGTGGTGCGGTTAGAGTAAACCCTTGGGATTTTGATGCTGTAGCTGAGGCACTTTACGAGGCTGTCGCGATGCCTGCTTTAGAGAAGCAACTAAGGCACGAAAAACATTACCGATACATTAGCTCTCATGACGTTGCTTACTGGGCTCACAGTTTCTCGCAAGATTTAGAGCGAGCATGTCAAGATCACTACAGTAAGCGATGCTGGGGAATCGGACTCGGTTTAGGATTCAGAATTCTGTCACTTTCACCAAGTTTCAGGAAGCTTTCCATTGAACATATTGGCTCTGCATATCGGAGCGCTTCTAGGAGGGCGATATTTTTGGACTACGACGGGACTGTCGTTTCCCAAGCTTCGTTGGTCAAATCCCCGACACCCGAAGTCATTTCTATACTCAACGACCTTTGCAAGGATTCAAACAACACTGTGTTTATAGTTAGTGGCAGGGGGAAAGATACTCTTGGTTCGTGGTTCGATTCGTGTAAGAATCTCGGTCTTGCCGCTGAACATGGATACTATTTGAGGTGGAATAGGGACTCTGAATGGGAAGTTAGTACATTAGCTGAAAACTTTGGTTGGAAAAGGATTGCAGAACCTGTGATGAAACTATACACCGAGGCGACCGATGGCTCGTCCATAGAGCCCAAGGACAGTGCCTTAGTATGGCATCATCGAGACGCCGATCCATGTTTCGGTTCATGTCAGGCCATGGAGCTCTTAGATCACCTTGAAAATGTTCTTGCTAACGAACCCGTAGTCGTCAAAAGAGGCCACCAGATCGTCGAAGTGAAACCACAGGGTGTGACTAAAGGATTAGTTGCTGAAAGAGTTCTTTCCACTATGATCGCCTCTGATAAGGCGCCCGACTTTGTGATGTGCATCGGAGACGATCGATCCGATGAAGACATGTTCAAAAGCATATCATGTACAAGCTATAGCTCATCCCTTGCTGTTCCTCCAAAGATATTTGCCTGTACTGTGGGGCAAAAGCCTAGCAAAGCCAAATACTATTTAGACGATACCACCGACGTTTTGACCGTACTTCAAAGCCTGGCCACCTCTACTAGCGGTAAACTGAGAGATCCTCTAAGGAGTCGGGTTCGTCTCTTACATTCGAGATTACCCGATTCTTTACCGATCACGGGTGGCAATGGATTCACATTCAGGAGATGCCTAGATGAATTTGGATTGATTATCGCTTTAAATTCGTCTTGGAGACCGGAAGTAGCCGGTCACACAGAAGAGCCTCCTTCTTGTGAAGCGGATAAATCCAATTCTCTGTTGCCCACCACCAGCTGCGGTTGTTCCCGGCTATCGTGCTTCGGATCTCGCCGAACAGCCGCCGGCGGGCCGTCATGGTGGGAGCGGATTAGGGCGTCGGAGGTTCACAACGAGGGGCGCTGGTGGGCGCGAGGCGTTAGGGTTCTTTTGAAGCTCCGAGAGTGGTCGGAGATCGTCGCTGGACCGAGATGGAAGACTTTCATTCGCCGATTCAATCGGAATAGAAGTGGTGCTACTGCTGCTGCTAGGCCTGGAAAATTTCAATACGATCCGTTGAGTTACGCTATGAATTTCGACGAAGGCTCGGGGCAGATAGGGGAATTGGACGACGATATCGATGATTTCAGTGGATTTCGAAACTTCTCTGCTCGCTACGCTTCGATTCCGGGGTCGTTGAAGACTGCAGGAACCACTGTTTTGGGGAAGGATGCTCCTACCGTCGAGTAA | 3144 | 45.9 | MLSSSCLSLLELSSVDMLDFPPTPRNVPRTMTASGIVSDKCRGRTIIVANFLPVHAKMDPDSGRWNFSFDDDSLLLQLKDGFSSDVDVVYVGSLKVDVNVQEQEEISQKLLEEFNCVPTFVPTSLQKQFYHGFCKQNLWPLFHYMMPISSYQGSRFDRPLWLAYLSANKRFADKVMEVINLEEDYVWIHDYHLMVLPTFLRKRYSRIKLGFFLHSPFPSSEIFRTLPVRDEILKALLNTDLIGFHTFSYAHHFLSCCSRLLGLEYESKRGYLTLDYFGRTIYIKILPVGVHMGRLEFALNHSHTSIKAKEIKENFKGKKLILGVDDMDIFKGIGLKLLAMEKLLNQHPELRGNVVLVQILNPARSNGNDVLEAKRETYEITKRINKVFGFRGYEPVILIDHPIPFHEKIAYYVLAECCIVNALRDGMNLVPYEYIVCRQGTSQIDEVLDVSPDSPHTSTIVVSEFIGCSPSLSGAVRVNPWDFDAVAEALYEAVAMPALEKQLRHEKHYRYISSHDVAYWAHSFSQDLERACQDHYSKRCWGIGLGLGFRILSLSPSFRKLSIEHIGSAYRSASRRAIFLDYDGTVVSQASLVKSPTPEVISILNDLCKDSNNTVFIVSGRGKDTLGSWFDSCKNLGLAAEHGYYLRWNRDSEWEVSTLAENFGWKRIAEPVMKLYTEATDGSSIEPKDSALVWHHRDADPCFGSCQAMELLDHLENVLANEPVVVKRGHQIVEVKPQGVTKGLVAERVLSTMIASDKAPDFVMCIGDDRSDEDMFKSISCTSYSSSLAVPPKIFACTVGQKPSKAKYYLDDTTDVLTVLQSLATSTSGKLRDPLRSRVRLLHSRLPDSLPITGGNGFTFRRCLDEFGLIIALNSSWRPEVAGHTEEPPSCEADKSNSLLPTTSCGCSRLSCFGSRRTAAGGPSWWERIRASEVHNEGRWWARGVRVLLKLREWSEIVAGPRWKTFIRRFNRNRSGATAAARPGKFQYDPLSYAMNFDEGSGQIGELDDDIDDFSGFRNFSARYASIPGSLKTAGTTVLGKDAPTVE | 1047 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 557057 | 562732 | + | CmoCh11G001070.1 | Cmo11g00107 | 390726 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo11g00107 | 1047 | TIGRFAM | T6PP: trehalose-phosphatase | 573 | 824 | IPR003337 | GO:0003824|GO:0005992 | |
Cmo11g00107 | 1047 | Pfam | Glycosyltransferase family 20 | 44 | 529 | IPR001830 | GO:0003824|GO:0005992 | |
Cmo11g00107 | 1047 | CDD | GT20_TPS | 44 | 529 | IPR001830 | GO:0003824|GO:0005992 | |
Cmo11g00107 | 1047 | Gene3D | - | 702 | 833 | IPR023214 | - | |
Cmo11g00107 | 1047 | Gene3D | - | 575 | 682 | IPR023214 | - | |
Cmo11g00107 | 1047 | SUPERFAMILY | HAD-like | 576 | 824 | IPR036412 | - | |
Cmo11g00107 | 1047 | CDD | HAD_TPP | 577 | 816 | - | - | |
Cmo11g00107 | 1047 | TIGRFAM | HAD-SF-IIB: HAD hydrolase, family IIB | 577 | 779 | IPR006379 | - | |
Cmo11g00107 | 1047 | PANTHER | ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)-RELATED | 1 | 831 | - | - | |
Cmo11g00107 | 1047 | Gene3D | Glycogen Phosphorylase B; | 37 | 297 | - | - | |
Cmo11g00107 | 1047 | Pfam | Trehalose-phosphatase | 579 | 813 | IPR003337 | GO:0003824|GO:0005992 | |
Cmo11g00107 | 1047 | Gene3D | Glycogen Phosphorylase B; | 298 | 513 | - | - | |
Cmo11g00107 | 1047 | PANTHER | TREHALOSE-6-PHOSPHATE SYNTHASE | 1 | 831 | IPR001830 | GO:0003824|GO:0005992 | |
Cmo11g00107 | 1047 | SUPERFAMILY | UDP-Glycosyltransferase/glycogen phosphorylase | 44 | 533 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo10g00141 | Cmo11g00107 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo04g01800 | Cmo-Chr4:9063736 | Cmo11g00107 | Cmo-Chr11:557057 | 0 | dispersed | |
Cmo10g00143 | Cmo-Chr10:659816 | Cmo11g00107 | Cmo-Chr11:557057 | 5.03E-86 | dispersed | |
Cmo10g00525 | Cmo-Chr10:2388571 | Cmo11g00107 | Cmo-Chr11:557057 | 9.41E-15 | dispersed | |
Cmo11g00107 | Cmo-Chr11:557057 | Cmo03g01337 | Cmo-Chr3:9942083 | 0 | dispersed | |
Cmo10g00141 | Cmo-Chr10:656364 | Cmo11g00107 | Cmo-Chr11:557057 | 0 | wgd | |
Cmo11g00107 | Cmo-Chr11:557057 | Cmo13g00927 | Cmo-Chr13:8166979 | 8.31E-44 | wgd | |
Cmo11g00107 | Cmo-Chr11:557057 | Cmo04g02849 | Cmo-Chr4:20339956 | 2.80E-29 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo11g00107 | K16055 | - | csv:101209676 | 1496.87 |