Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00107 ATGCTGTCGAGTTCTTGCTTGAGTTTGTTAGAGTTGTCATCTGTGGATATGTTGGATTTTCCTCCTACACCGAGAAATGTTCCACGGACGATGACTGCGTCGGGGATAGTATCCGATAAATGTCGAGGGAGGACGATAATAGTGGCGAATTTCCTTCCTGTTCATGCTAAAATGGATCCAGATTCTGGGAGATGGAACTTTAGCTTCGACGACGATTCGCTTTTGCTTCAGCTGAAAGATGGATTCTCATCAGATGTTGATGTTGTTTATGTTGGATCATTGAAGGTTGATGTCAATGTCCAAGAACAAGAAGAGATTTCGCAGAAACTACTGGAGGAATTCAACTGTGTACCGACTTTCGTCCCGACGTCCCTTCAGAAACAGTTCTATCATGGATTCTGTAAACAAAATCTATGGCCACTTTTCCATTACATGATGCCGATTTCGTCTTATCAGGGATCTCGCTTTGATCGACCTCTTTGGTTAGCGTATCTTTCAGCTAACAAAAGGTTTGCTGATAAAGTTATGGAGGTGATCAATTTGGAAGAAGATTATGTATGGATTCATGACTATCACCTTATGGTTCTCCCTACCTTTTTGAGAAAACGTTACAGTCGAATTAAGCTCGGATTCTTTCTTCATAGTCCGTTTCCCTCATCAGAGATCTTCCGAACTCTGCCTGTTAGAGATGAGATTCTGAAAGCGTTACTTAACACGGACCTAATCGGCTTCCATACGTTCAGCTATGCCCATCACTTTCTATCATGTTGTAGTAGACTGCTCGGTTTGGAGTATGAATCGAAACGTGGCTATCTCACGCTTGACTATTTCGGACGTACGATATACATCAAGATTTTGCCTGTTGGAGTTCATATGGGTCGACTCGAATTCGCATTAAATCATTCCCACACTTCAATCAAAGCCAAGGAGATCAAAGAAAACTTCAAAGGAAAGAAGCTTATTCTTGGTGTTGATGATATGGACATATTTAAAGGTATTGGTCTGAAGTTATTAGCTATGGAAAAGCTGTTGAACCAGCATCCGGAGTTGCGGGGCAATGTCGTTCTGGTGCAAATTCTGAATCCTGCACGGAGCAATGGGAACGACGTCCTCGAAGCGAAAAGGGAAACTTACGAGATAACCAAAAGGATTAACAAGGTTTTCGGTTTTCGGGGATATGAACCTGTGATCTTGATTGATCATCCTATTCCTTTCCATGAGAAGATTGCATATTATGTATTAGCAGAGTGCTGCATTGTAAATGCTCTCAGGGATGGTATGAACTTAGTTCCATACGAGTACATTGTTTGTCGACAGGGAACTTCTCAAATCGACGAAGTTTTGGATGTCTCCCCGGATTCACCTCATACCAGCACGATTGTCGTGTCGGAATTCATAGGTTGTTCGCCATCTCTAAGTGGTGCGGTTAGAGTAAACCCTTGGGATTTTGATGCTGTAGCTGAGGCACTTTACGAGGCTGTCGCGATGCCTGCTTTAGAGAAGCAACTAAGGCACGAAAAACATTACCGATACATTAGCTCTCATGACGTTGCTTACTGGGCTCACAGTTTCTCGCAAGATTTAGAGCGAGCATGTCAAGATCACTACAGTAAGCGATGCTGGGGAATCGGACTCGGTTTAGGATTCAGAATTCTGTCACTTTCACCAAGTTTCAGGAAGCTTTCCATTGAACATATTGGCTCTGCATATCGGAGCGCTTCTAGGAGGGCGATATTTTTGGACTACGACGGGACTGTCGTTTCCCAAGCTTCGTTGGTCAAATCCCCGACACCCGAAGTCATTTCTATACTCAACGACCTTTGCAAGGATTCAAACAACACTGTGTTTATAGTTAGTGGCAGGGGGAAAGATACTCTTGGTTCGTGGTTCGATTCGTGTAAGAATCTCGGTCTTGCCGCTGAACATGGATACTATTTGAGGTGGAATAGGGACTCTGAATGGGAAGTTAGTACATTAGCTGAAAACTTTGGTTGGAAAAGGATTGCAGAACCTGTGATGAAACTATACACCGAGGCGACCGATGGCTCGTCCATAGAGCCCAAGGACAGTGCCTTAGTATGGCATCATCGAGACGCCGATCCATGTTTCGGTTCATGTCAGGCCATGGAGCTCTTAGATCACCTTGAAAATGTTCTTGCTAACGAACCCGTAGTCGTCAAAAGAGGCCACCAGATCGTCGAAGTGAAACCACAGGGTGTGACTAAAGGATTAGTTGCTGAAAGAGTTCTTTCCACTATGATCGCCTCTGATAAGGCGCCCGACTTTGTGATGTGCATCGGAGACGATCGATCCGATGAAGACATGTTCAAAAGCATATCATGTACAAGCTATAGCTCATCCCTTGCTGTTCCTCCAAAGATATTTGCCTGTACTGTGGGGCAAAAGCCTAGCAAAGCCAAATACTATTTAGACGATACCACCGACGTTTTGACCGTACTTCAAAGCCTGGCCACCTCTACTAGCGGTAAACTGAGAGATCCTCTAAGGAGTCGGGTTCGTCTCTTACATTCGAGATTACCCGATTCTTTACCGATCACGGGTGGCAATGGATTCACATTCAGGAGATGCCTAGATGAATTTGGATTGATTATCGCTTTAAATTCGTCTTGGAGACCGGAAGTAGCCGGTCACACAGAAGAGCCTCCTTCTTGTGAAGCGGATAAATCCAATTCTCTGTTGCCCACCACCAGCTGCGGTTGTTCCCGGCTATCGTGCTTCGGATCTCGCCGAACAGCCGCCGGCGGGCCGTCATGGTGGGAGCGGATTAGGGCGTCGGAGGTTCACAACGAGGGGCGCTGGTGGGCGCGAGGCGTTAGGGTTCTTTTGAAGCTCCGAGAGTGGTCGGAGATCGTCGCTGGACCGAGATGGAAGACTTTCATTCGCCGATTCAATCGGAATAGAAGTGGTGCTACTGCTGCTGCTAGGCCTGGAAAATTTCAATACGATCCGTTGAGTTACGCTATGAATTTCGACGAAGGCTCGGGGCAGATAGGGGAATTGGACGACGATATCGATGATTTCAGTGGATTTCGAAACTTCTCTGCTCGCTACGCTTCGATTCCGGGGTCGTTGAAGACTGCAGGAACCACTGTTTTGGGGAAGGATGCTCCTACCGTCGAGTAA 3144 45.9 MLSSSCLSLLELSSVDMLDFPPTPRNVPRTMTASGIVSDKCRGRTIIVANFLPVHAKMDPDSGRWNFSFDDDSLLLQLKDGFSSDVDVVYVGSLKVDVNVQEQEEISQKLLEEFNCVPTFVPTSLQKQFYHGFCKQNLWPLFHYMMPISSYQGSRFDRPLWLAYLSANKRFADKVMEVINLEEDYVWIHDYHLMVLPTFLRKRYSRIKLGFFLHSPFPSSEIFRTLPVRDEILKALLNTDLIGFHTFSYAHHFLSCCSRLLGLEYESKRGYLTLDYFGRTIYIKILPVGVHMGRLEFALNHSHTSIKAKEIKENFKGKKLILGVDDMDIFKGIGLKLLAMEKLLNQHPELRGNVVLVQILNPARSNGNDVLEAKRETYEITKRINKVFGFRGYEPVILIDHPIPFHEKIAYYVLAECCIVNALRDGMNLVPYEYIVCRQGTSQIDEVLDVSPDSPHTSTIVVSEFIGCSPSLSGAVRVNPWDFDAVAEALYEAVAMPALEKQLRHEKHYRYISSHDVAYWAHSFSQDLERACQDHYSKRCWGIGLGLGFRILSLSPSFRKLSIEHIGSAYRSASRRAIFLDYDGTVVSQASLVKSPTPEVISILNDLCKDSNNTVFIVSGRGKDTLGSWFDSCKNLGLAAEHGYYLRWNRDSEWEVSTLAENFGWKRIAEPVMKLYTEATDGSSIEPKDSALVWHHRDADPCFGSCQAMELLDHLENVLANEPVVVKRGHQIVEVKPQGVTKGLVAERVLSTMIASDKAPDFVMCIGDDRSDEDMFKSISCTSYSSSLAVPPKIFACTVGQKPSKAKYYLDDTTDVLTVLQSLATSTSGKLRDPLRSRVRLLHSRLPDSLPITGGNGFTFRRCLDEFGLIIALNSSWRPEVAGHTEEPPSCEADKSNSLLPTTSCGCSRLSCFGSRRTAAGGPSWWERIRASEVHNEGRWWARGVRVLLKLREWSEIVAGPRWKTFIRRFNRNRSGATAAARPGKFQYDPLSYAMNFDEGSGQIGELDDDIDDFSGFRNFSARYASIPGSLKTAGTTVLGKDAPTVE 1047
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 557057 562732 + CmoCh11G001070.1 Cmo11g00107 390726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00107 1047 TIGRFAM T6PP: trehalose-phosphatase 573 824 IPR003337 GO:0003824|GO:0005992
Cmo11g00107 1047 Pfam Glycosyltransferase family 20 44 529 IPR001830 GO:0003824|GO:0005992
Cmo11g00107 1047 CDD GT20_TPS 44 529 IPR001830 GO:0003824|GO:0005992
Cmo11g00107 1047 Gene3D - 702 833 IPR023214 -
Cmo11g00107 1047 Gene3D - 575 682 IPR023214 -
Cmo11g00107 1047 SUPERFAMILY HAD-like 576 824 IPR036412 -
Cmo11g00107 1047 CDD HAD_TPP 577 816 - -
Cmo11g00107 1047 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 577 779 IPR006379 -
Cmo11g00107 1047 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)-RELATED 1 831 - -
Cmo11g00107 1047 Gene3D Glycogen Phosphorylase B; 37 297 - -
Cmo11g00107 1047 Pfam Trehalose-phosphatase 579 813 IPR003337 GO:0003824|GO:0005992
Cmo11g00107 1047 Gene3D Glycogen Phosphorylase B; 298 513 - -
Cmo11g00107 1047 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 831 IPR001830 GO:0003824|GO:0005992
Cmo11g00107 1047 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 44 533 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo10g00141 Cmo11g00107 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01800 Cmo-Chr4:9063736 Cmo11g00107 Cmo-Chr11:557057 0 dispersed
Cmo10g00143 Cmo-Chr10:659816 Cmo11g00107 Cmo-Chr11:557057 5.03E-86 dispersed
Cmo10g00525 Cmo-Chr10:2388571 Cmo11g00107 Cmo-Chr11:557057 9.41E-15 dispersed
Cmo11g00107 Cmo-Chr11:557057 Cmo03g01337 Cmo-Chr3:9942083 0 dispersed
Cmo10g00141 Cmo-Chr10:656364 Cmo11g00107 Cmo-Chr11:557057 0 wgd
Cmo11g00107 Cmo-Chr11:557057 Cmo13g00927 Cmo-Chr13:8166979 8.31E-44 wgd
Cmo11g00107 Cmo-Chr11:557057 Cmo04g02849 Cmo-Chr4:20339956 2.80E-29 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00107 K16055 - csv:101209676 1496.87