Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00110 ATGAGTTATGGGTTAGGATTGATGGTACTCGTTCGGCGTGAAGGTGGGATCGAGGTTGGAATTGGGGAAAATGCAAGGCTATGCATGGGCGTCGAGGTGAGAACTGGAAACGGAGTCGGCACATGTGGACAGTCCCCACACGCGGGTGGACGTAGGATTAGTGTTGGTGATTGTGCTCTTTTCAAACCCCCCAAAGACTCCCCACCTTTTATTGGCATAATCCGGTGGTTGACTACTGGTAAGGAGAATAAATTGAAGTTGGGTGTGAATTGGCTTTATCGATCTTCTGAATTAAAGCTCGGCAAAGGCATCCTTTTGGAAGCTGCGCCCAACGAAGTGTTCTATTCCTTTCACAAGGATGAAATTCCTGCTGCATCTTTACTCCACCCGTGTAAAGTTGCATTCCTTCCTAAGGACATCAAACTTCCATCAGGAATTTCGTCATTTGTGTGCCGGAGAGTGTATGACATAAGGAAGAAGTGTTTATGGTGGCTAACTGATCAGGATTATATTAATGAACATCGGGAAGAAGTGGATCAATTATTAGACAAGACAAGGTTAGAAATGCATGCTTCAGTCCAACCTGGTGGCCGATCACCTAAGCCTACTAGTGGTCCAACATCAACATCTCAGTTAAAAGCTAATTCAGATGGTGTTCAAGCCACCTTTCCTTCTCACACGAAAGGCAAGAAAAGAGAGAGGAGTGACCAGGGATTAGAATCTGTTAAACGTGAACGCATTGTAAAAGCTGATGAAGGGGATTCTGCTAACTGCAGATTGGAAAATACTTTAAAGTTTGAGATCACAAAAATTGCTGAAAAAGGAAGCTTAGTTGATTCTGAAGCTGTAGAGAAATTGGTGCAGCTTATGCTGTCTGATAGTGACAAAAAAATTGATTTGGCTGGCAGATCAGCACTTGCAGGTGTGATAGCTGCCACAGATAAGGTTGAGTGCCTTAATCAGTTTGTGCATCTTAAGGGTTTACCTGTGCTTGATGAATGGCTCCAAGAGGTTCACAAGGGAAAAATTGGCAGTGGCGGTAGCCCCAAGGATAGCGATAAAGCAGTTGAGGAATTTCTACTGATTTTGCTTCGAGCCCTTGATAAACTACCTGTAAATCTTCCTGCTTTGCAGATGTGCCATATTGGAAAGTCTGTGAATCATTTACGCTCACATAAGAACTTGGAAATTCAGAAGAAAGCAAGGAGCTTAGTGGACACATGGAAAAAACGCGTTGAAGCTGAAATGAACATTAATGATGCAAAGTCTGGTTCAAACCAAGCTGTTGCATGGAGTGCAAGAACTCGATCATCCGAAGTTGCTCATGGTGGGAGGAACCAAGATGCATCCTCTGAAGTTGCCATGAAGAGCTCGGTTTCTCAGCTTTCTACATCCAAATCTGCTTCAGTTAAGCTTGCTCAGGATGATAGTGTTACAAGATCTGCATCTGCCTCTCCTGGTTCTATGAAACCAGTTTTATCACCCGCATCAGCAAGTATTAACTCAAAAGATGGATCATCCAGAAATCCTGGTGTTTGTGGCACAGCTGATCTTTCTCAAACTATTGCCAGGGATGAAAAGAGTAGCAGTTCCAGTCAGTCCCATAATAATAGTCAATCTTGTTCTAGCGAACATGGTAAAAGTGGTGGTTTAGGGAAGGAGGATGCCAGAAGCTCTACTGCTGGTTCAATGAGTGTGAATAAGATCTCAGGTGGTGGATCTCGACAGCGCAAATCAGTCAATGGATTTCCTAGCACTGTTCTCTCCGGGGCTCAACGAGATGTAGGGTCAGGAAAAAGTTCTTTGCACCGAAACACAGTTTTAGAGAGATCATCACAATCGGGAACGACCTATGAAAAGGCATCTGATGGACCTATTGGTGAGGGAAACAGTCCTAAATTGATAGTTAAGATCACCAATCGTGGCCGAAGTCCTGCACACAGTGTCAGTGGTGGATCGTTTGAAGATCCTTCAATAATGAATAGCAGGGCTTCTTCTCCTCCACTTTCAGAGAAGCATGATCAATTTGATCACAGTAAGAGTGATACCTGTCAGCCTAATATTACTGGAGATGTGAATGTCGAGTCCTGGCAGAATAGTGATGTAAAGGATATGGTGACCGGCTCTGATGATGGCGATGGATCTCCTGCTGCTGTACATGGTGAAGATCGATGTCAGGCTGTTGAGGACATAAAAGTTTCAAGGGCGAATGATCATAAAAATGGGAAGTTACATGAAGCTTCTTTGAGCTCCATAAATGCTTTAATTGAGAGTTGTATTAAATGCTCCGAAGCTAGTATGCCTACCTCACTCATGGATAATGTTGGAATGAATTTACTTGCTAGTGTAGCTGCCGTTGAGATGTCAAAGTCTGATTTTGTTTTGCCTTCTGATACACAAGGAAATATCACTGCAGTTGACCGAACCTCCAGAAGCAGTGATTGTAAAGTTAAAGCATCTTATCCTGAAGAGGAAGCTAGAGATAACATCCAGTCAAATGATGCTATGGATGTTCCTGAGCAGGGCGTGATCACTACTTCTTTTGGAGCTAAAATTGTGGATGGAAGGTGTGCTTCACAATCTGAAGAGAAACCGGTTGGAGATTTGAGTGGTCATTCAAAATCATCTGGTGTAAATTTGCAACCAACTGCTGTGCCATTTCCAGATGGTTGTATAAAAATGAACGAGGCTGGAGGGCCTATCTCTCCTTCTAGGATGCCAGAGAAGGGCTCTGAGATGGAGGGGGCTAAACCAGTTGAAGACAGTAAGGCAGCTGATGTAGTTGATGGAGATAGCAGTCCAGAATCTAAACCTAAGCCAAGCAGTTCTTTGCCTGATGGTAGTGTGGTTGGTGATGGTATCTCGAATCGTGAAGTTGAAGCGGATGTTGTTAATGACCCTTTGCATAGGTTGCAAGAAGTTGATGGCAATACAAACGATAGACTGCATGGTGTTAGTACATCTGACCGAAGGCTATCTTCCAAGTTGAACTGCGATTCTGCCAAATTAAGGAATGATGAATTACTTCAGGCTTCAGGCTCTTCAAGTAATTTGATTTCTGTAAGTGCAAGTGAGATGAAGGGCGAGAAGAATGATGAAACCAACACATCAGCTGATGTGAAACTTGAAAAACCTCAAAGCGACCTGGATCCTATGGTATCTGAATCCCGAAGTGTAGGTGGCTCATGTTCAGCGACCAACCTTGAGGGCGAGCACATGGAGGAAAATTTGGAATCTAAATTTAATAAGGAGAAAAATGGAGGACAAACACATCATTGGCAATCTATTCTCACTCCTGTTCGAGAAACTGAACAGCCTCTTCCATCCAAGAGGTCCAAATTAGCTGGTGCTGAAGCAGAAGAAGCAGAGGAGTCTACATCCACTGCTGCAGATGTTGGTTCCATGTCTGCTTCAGGAGCGCCAGATATGGATGCTAAGTTGGAATTTGATTTGAATGAAGGCTTTAATGTAGATGATGGAAAATGCAGTGAGCCAAGCAGCATTCCTGCTTCAATTACAACTGTTCAGTTAATTAGTCCGTTACCCTTTCCTGTATCTATATCTAATGTGGCAAGCAACATTCCTGCTTCAATTACAGTTGCAGCTGCAGCAAAAAGACCCTTTGTACCACCTGATGATCTATTGAGGAGTAAAGGGGAACTTGGCTGGAAAGGATCAGCCGCCACAAGTGCTTTTCGACCTGCTGAACCTAGAAAAATTCTAGATATGCCACTAGGTGCTCCAACTGCTTCACTTCCTGATGCTGCAGCCAGTAAAATTTCACGACCCCCATTGGATATTGACTTGAATGTTCCTGATGAAAGGACTCTTGAGGATATGAATCCCCAGATATTTTCTGAGGAGGTAGCTTCTAAGTCTGGCCTGGTTAATAATCGTGATCTAGCACGTGATATAGGTTCCACACATGGGCGTTGTTCTGGAGGACTAGATCTTGACTTAAACCGAGTTGATGATGCTCCTGATCCAAGCAGCTTCTCCTTGAACAACTGTCGTAGAATAGAAACTCCTCTTAGTGTTAAATCATCAACTGTTCGTCTCAATGACAAGGTGAATTTTCACAGGGACTTTGATTTGAATGGGCCTATTGCTGATGAGAGCACTACTGAACCGTCAATATTTCCTCAGCATGCTAGAAGCCATATGCCATCCCAGCCAACTGTTTCTGGCCTTTGGATGAACAATGCAGAAATAGGAAATTTTCCATCCTGGTTTCCTCCAGGAAATGCTTATTCTGCTGTTGCAATTCCATCAATTATGCCTGATAGAGCAGAACAGGCTTTTCCAGTTGCAACAAATGGACCGCCCAGGATTTTGGGACCCACAAGTGGTACCAGTCCATATAGCACCGATGTCTTTAGAGGCCAAGTATTATCATCTTCTCCTGCAGTGCCGTTTCCTTCAACTTTTCAATATCCTGTCCTGTCTTTTGGAAACAGCTTTCCTCTACCCTCGGCCACATTTTCAGGCAACGCAACAACATATGTTGATTCGTCATCTGGTGGCAGGCTTTGCTTCCCTGCGGTCGCTTCACAGTTCTTAGCTCCTCCCGGTGCAGTTTCAACGCATTATCCAAGACCTTTTGTTGTCAGTCACTCAGATGGCGGCAACAATACTAGTTCTGATAGTAGTAGAAAGTGGGGGAGACAAGGTTTAGATCTAAATGCTGGCCCTATTGTTCCAGACGTTGAAGGAAGAGAGGAATCATCGTCCTTGGTACCAAGGCAACTATCTGTTGCCAGTTCGCAAGCCACCACCGAGGAGCATATGAGGATTTACCAGCCAGCAATTGGCATGATGAAGAGAAAAGAGCCAGAGGGAGGGTGGGATGGGTACAAACAGTCATCATGGTAG 4872 44.07 MSYGLGLMVLVRREGGIEVGIGENARLCMGVEVRTGNGVGTCGQSPHAGGRRISVGDCALFKPPKDSPPFIGIIRWLTTGKENKLKLGVNWLYRSSELKLGKGILLEAAPNEVFYSFHKDEIPAASLLHPCKVAFLPKDIKLPSGISSFVCRRVYDIRKKCLWWLTDQDYINEHREEVDQLLDKTRLEMHASVQPGGRSPKPTSGPTSTSQLKANSDGVQATFPSHTKGKKRERSDQGLESVKRERIVKADEGDSANCRLENTLKFEITKIAEKGSLVDSEAVEKLVQLMLSDSDKKIDLAGRSALAGVIAATDKVECLNQFVHLKGLPVLDEWLQEVHKGKIGSGGSPKDSDKAVEEFLLILLRALDKLPVNLPALQMCHIGKSVNHLRSHKNLEIQKKARSLVDTWKKRVEAEMNINDAKSGSNQAVAWSARTRSSEVAHGGRNQDASSEVAMKSSVSQLSTSKSASVKLAQDDSVTRSASASPGSMKPVLSPASASINSKDGSSRNPGVCGTADLSQTIARDEKSSSSSQSHNNSQSCSSEHGKSGGLGKEDARSSTAGSMSVNKISGGGSRQRKSVNGFPSTVLSGAQRDVGSGKSSLHRNTVLERSSQSGTTYEKASDGPIGEGNSPKLIVKITNRGRSPAHSVSGGSFEDPSIMNSRASSPPLSEKHDQFDHSKSDTCQPNITGDVNVESWQNSDVKDMVTGSDDGDGSPAAVHGEDRCQAVEDIKVSRANDHKNGKLHEASLSSINALIESCIKCSEASMPTSLMDNVGMNLLASVAAVEMSKSDFVLPSDTQGNITAVDRTSRSSDCKVKASYPEEEARDNIQSNDAMDVPEQGVITTSFGAKIVDGRCASQSEEKPVGDLSGHSKSSGVNLQPTAVPFPDGCIKMNEAGGPISPSRMPEKGSEMEGAKPVEDSKAADVVDGDSSPESKPKPSSSLPDGSVVGDGISNREVEADVVNDPLHRLQEVDGNTNDRLHGVSTSDRRLSSKLNCDSAKLRNDELLQASGSSSNLISVSASEMKGEKNDETNTSADVKLEKPQSDLDPMVSESRSVGGSCSATNLEGEHMEENLESKFNKEKNGGQTHHWQSILTPVRETEQPLPSKRSKLAGAEAEEAEESTSTAADVGSMSASGAPDMDAKLEFDLNEGFNVDDGKCSEPSSIPASITTVQLISPLPFPVSISNVASNIPASITVAAAAKRPFVPPDDLLRSKGELGWKGSAATSAFRPAEPRKILDMPLGAPTASLPDAAASKISRPPLDIDLNVPDERTLEDMNPQIFSEEVASKSGLVNNRDLARDIGSTHGRCSGGLDLDLNRVDDAPDPSSFSLNNCRRIETPLSVKSSTVRLNDKVNFHRDFDLNGPIADESTTEPSIFPQHARSHMPSQPTVSGLWMNNAEIGNFPSWFPPGNAYSAVAIPSIMPDRAEQAFPVATNGPPRILGPTSGTSPYSTDVFRGQVLSSSPAVPFPSTFQYPVLSFGNSFPLPSATFSGNATTYVDSSSGGRLCFPAVASQFLAPPGAVSTHYPRPFVVSHSDGGNNTSSDSSRKWGRQGLDLNAGPIVPDVEGREESSSLVPRQLSVASSQATTEEHMRIYQPAIGMMKRKEPEGGWDGYKQSSW 1623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 574781 585127 - CmoCh11G001100.1 Cmo11g00110 390729

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00110 1623 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 49 1623 - -
Cmo11g00110 1623 MobiDBLite consensus disorder prediction 1538 1592 - -
Cmo11g00110 1623 MobiDBLite consensus disorder prediction 859 993 - -
Cmo11g00110 1623 MobiDBLite consensus disorder prediction 1051 1065 - -
Cmo11g00110 1623 MobiDBLite consensus disorder prediction 654 669 - -
Cmo11g00110 1623 MobiDBLite consensus disorder prediction 419 687 - -
Cmo11g00110 1623 CDD TFIIS_I 337 413 - -
Cmo11g00110 1623 MobiDBLite consensus disorder prediction 979 993 - -
Cmo11g00110 1623 MobiDBLite consensus disorder prediction 1023 1066 - -
Cmo11g00110 1623 MobiDBLite consensus disorder prediction 226 246 - -
Cmo11g00110 1623 MobiDBLite consensus disorder prediction 191 246 - -
Cmo11g00110 1623 ProSiteProfiles TFIIS N-terminal domain profile. 329 415 IPR017923 -
Cmo11g00110 1623 MobiDBLite consensus disorder prediction 419 546 - -
Cmo11g00110 1623 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 317 426 IPR035441 -
Cmo11g00110 1623 SMART TFS2_5 335 414 IPR003617 GO:0005634
Cmo11g00110 1623 MobiDBLite consensus disorder prediction 197 223 - -
Cmo11g00110 1623 MobiDBLite consensus disorder prediction 558 620 - -
Cmo11g00110 1623 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 49 1623 - -
Cmo11g00110 1623 MobiDBLite consensus disorder prediction 1026 1050 - -
Cmo11g00110 1623 Pfam TFIIS helical bundle-like domain 363 412 IPR017923 -
Cmo11g00110 1623 MobiDBLite consensus disorder prediction 1604 1623 - -
Cmo11g00110 1623 MobiDBLite consensus disorder prediction 1100 1140 - -
Cmo11g00110 1623 MobiDBLite consensus disorder prediction 1577 1592 - -
Cmo11g00110 1623 Pfam BAH domain 53 158 IPR001025 GO:0003682
Cmo11g00110 1623 SMART BAH_4 51 166 IPR001025 GO:0003682
Cmo11g00110 1623 MobiDBLite consensus disorder prediction 910 933 - -
Cmo11g00110 1623 MobiDBLite consensus disorder prediction 1538 1554 - -
Cmo11g00110 1623 MobiDBLite consensus disorder prediction 962 977 - -
Cmo11g00110 1623 Gene3D - 41 264 IPR043151 -
Cmo11g00110 1623 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 279 416 IPR035441 -
Cmo11g00110 1623 ProSiteProfiles BAH domain profile. 51 166 IPR001025 GO:0003682
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00110 - - - bhj:120071278 2656.32
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo10g00147 Cmo11g00110 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g02038 Cmo-Chr1:14278906 Cmo11g00110 Cmo-Chr11:574781 2.31E-10 dispersed
Cmo09g00094 Cmo-Chr9:453119 Cmo11g00110 Cmo-Chr11:574781 1.49E-09 dispersed
Cmo11g00110 Cmo-Chr11:574781 Cmo15g01291 Cmo-Chr15:8854091 3.68E-19 dispersed
Cmo10g00147 Cmo-Chr10:673801 Cmo11g00110 Cmo-Chr11:574781 0 wgd
Cmo11g00110 Cmo-Chr11:574781 Cmo11g01707 Cmo-Chr11:12114958 1.08E-93 wgd
Cmo11g00110 Cmo-Chr11:574781 Cmo14g00643 Cmo-Chr14:3235332 5.62E-93 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g704 . . . . Bpe12g00585 . . Bma12g01028 . . . . Car10g00132 . Sed08g1505 . Cpe04g01543 Bhi02g00413 Tan09g2404 Cmetu02g1332 . Hepe09g0183 . . Cla06g01645 Cam06g1830 Cec06g1879 Cco06g1885 Clacu06g1789 Cmu06g1731 Cre06g2549 . . Cone13ag0127 Cone19ag0131 . . . . Blo13g00047 Blo15g00276 . . Bpe07g00824 . . Bma08g00176 . Cmo10g00147 Cmo11g00110 . . . . . Cpe18g00833 . . . . . . . . . . . . . . Lsi06g01533 Csa01g00170 Chy02g02561 Cme02g01950
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003613 1 4 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 2 2 1 1 1 1 4 3 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10514 PF01426 BAH 4.00E-08 No_clan Cmo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g00110 Cmo_Chr11 FPKM 55.496071 59.656948 98.269638 98.726212 123.021431 129.82399 125.202896 43.865814 43.768227 47.027153