Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00121 ATGGGTGGCAATGGCAAGTTCCGGTGGAAATCCATCTTCTCCCATCGTCGTTCTTCTTCTAGTTTTAGGGTCGAATCCAAGGAGCCTCCTAACGAGTTCATTTGCCCAGTTTCCGGATCCTTAATGGCCGACCCGGTTGTTGTCTCTTCCGGCCAGACCTTTGAGCGTGTTTCTACGCAGGTTTGCAGGAGTTTGGGGTTCTCCCCTGTGTTAGAGGATGGCTCGACCCCAGATTTCTCCACTGTGATTCCGAATTTGGCTATGAAGAAGACGATTCTCCATTGGTGTGAGGAGTCCGGTGTCAGGAATTCTCAGGCGCCTGATTACGACTCCGTGGAGAAGATTGTTAGAGCATTGATGGAGGAGAAGGACAAGGAGAAGCCGCCTCAGGTCGGAATTAGGGATTTGTTAGCGGGGGTATCGGATTTGCCGCCGGTGAATTTTTCGCACGCCGTGACGGAGTTAGGCCACCGTCCAGAACGTTACTACACGAGCTCCTCGGAGGAATCGGTCATCGTCGGAGGAAGTCCGGGAACTCCGCTGCCGTTCACGACTCGACCTGGATGTTATTCCTCTTCGTCTTCTTCCTGTGAAGTTGTGGAAAACGAAGCGCTCATCCAAACCCTAGGCCCTAATTCATCGATATCCCAAGACGAGAAGGAATTGCTATCGAAGCTCACGAGTCCCGATGTGTTTAAGCAAGAAGAAGGCGTTATTTCGCTTAGAAAAATCACGAAAGAAAATGAGAAAATTAGGGTTTCGCTTTGTACGCCTCGGATTCTCTTATCTCTCCGCCCTTTGATTACGTCGAGATACTCCGCCGTACAAATCAACGCCCTCGCCTCTCTGGTAAATCTCTCCCTCGAAAAGCTAAACAAGCAAAAGATCGCGCGGTCTGGTCTGGTTCCGAACTTAATCGACGCGCTTAAAGGAGGACATGCCGAAGCGCAAGAACACGCCGCCGGCGCACTCTTCAGCCTAGCCTTGGAGGACGAAAATCGGATGACAATCGGAGTTCTAGGCGCACTGCCGCCACTCCTTTACGCACTCCGATCGAATAGCGAGATAACTCGAAAGGATTCCGCTCTGTGTCTGTACAACCTAACAATGATACAGAGCAACCGAGTGAAGCTCATCAAACTCGGCGCCGTAACGACTCTACTCTCCATGGTGAAATCAGGTAGCTCAATGAATTGGCTGCTGCTGATCCTCTGCAATATCGCCGTGTGCCAGGAGGGAAGATCGGCAATGCTAGACGCCAACGCCGTCGGGCTCTTGGTCGGAATGCTGAGGGAGAAAGAATTATACTCGAAATCAACTCGCGAGAATTGCGTTGCGGCATTGTACGCACTCAGCTATGGAAGTATGAGGTTCAAAGGACTGGCGAAGGAAGCCGGAGCAATGGAGGTTTTGAGGGAGATTGCTGAAAGAGGAAGTGATAGAGCGAGAGAGAAGGCGAAGAAGATATTGGAGAGGATGAAGATGAGAGGGACATTCAATGAAGACGATGACGAAGAAGAAGAAGAAGAAGAAGACGCCAATGGCGGTGAGTCGAGTTTCGAAAGAGGCGGACTCAGGTTGAGTCGGTACCGAAACGGCGGTGGAAGAAGTCCCAGATCGGCTAATACGACGCCGTTTTGA 1641 51.13 MGGNGKFRWKSIFSHRRSSSSFRVESKEPPNEFICPVSGSLMADPVVVSSGQTFERVSTQVCRSLGFSPVLEDGSTPDFSTVIPNLAMKKTILHWCEESGVRNSQAPDYDSVEKIVRALMEEKDKEKPPQVGIRDLLAGVSDLPPVNFSHAVTELGHRPERYYTSSSEESVIVGGSPGTPLPFTTRPGCYSSSSSSCEVVENEALIQTLGPNSSISQDEKELLSKLTSPDVFKQEEGVISLRKITKENEKIRVSLCTPRILLSLRPLITSRYSAVQINALASLVNLSLEKLNKQKIARSGLVPNLIDALKGGHAEAQEHAAGALFSLALEDENRMTIGVLGALPPLLYALRSNSEITRKDSALCLYNLTMIQSNRVKLIKLGAVTTLLSMVKSGSSMNWLLLILCNIAVCQEGRSAMLDANAVGLLVGMLREKELYSKSTRENCVAALYALSYGSMRFKGLAKEAGAMEVLREIAERGSDRAREKAKKILERMKMRGTFNEDDDEEEEEEEDANGGESSFERGGLRLSRYRNGGGRSPRSANTTPF 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 626277 627917 + CmoCh11G001210.1 Cmo11g00121 390740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00121 546 CDD RING-Ubox 34 70 - -
Cmo11g00121 546 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 1 535 - -
Cmo11g00121 546 SMART arm_5 410 453 IPR000225 GO:0005515
Cmo11g00121 546 SMART arm_5 289 329 IPR000225 GO:0005515
Cmo11g00121 546 SMART arm_5 330 370 IPR000225 GO:0005515
Cmo11g00121 546 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 26 101 IPR013083 -
Cmo11g00121 546 Pfam U-box domain 30 98 IPR003613 GO:0004842|GO:0016567
Cmo11g00121 546 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 300 337 IPR000225 GO:0005515
Cmo11g00121 546 PANTHER U BOX DOMAIN-CONTAINING 1 535 - -
Cmo11g00121 546 ProSiteProfiles U-box domain profile. 28 102 IPR003613 GO:0004842|GO:0016567
Cmo11g00121 546 Gene3D - 216 495 IPR011989 -
Cmo11g00121 546 MobiDBLite consensus disorder prediction 501 515 - -
Cmo11g00121 546 SUPERFAMILY ARM repeat 220 493 IPR016024 -
Cmo11g00121 546 SUPERFAMILY RING/U-box 16 101 - -
Cmo11g00121 546 MobiDBLite consensus disorder prediction 494 546 - -
Cmo11g00121 546 SMART Ubox_2 32 95 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00121 Cmo-Chr11:626277 Cmo15g00326 Cmo-Chr15:1512571 7.30E-171 dispersed
Cmo10g00160 Cmo-Chr10:725771 Cmo11g00121 Cmo-Chr11:626277 0 wgd
Cmo11g00121 Cmo-Chr11:626277 Cmo13g00931 Cmo-Chr13:8185126 0 wgd
Cmo11g00121 Cmo-Chr11:626277 Cmo04g02856 Cmo-Chr4:20359053 2.01E-162 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00121 - - csv:101213423 779.245