Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00126 ATGCCTCTCTCCGCCTCCGTGACACAGAGCCTGAAGCTTCGGATTCTCTCGTGCCTCACCAAGCTTTCCGACCGAGATACCTATTCTCTTGCTGCATCCGAGCTTGAATCTATTGCTCGGAGTCTTGACGTTAGTTCCTTGCCGATTTTCCTTTCCTGTATGTACGCAATTGATGCCTCGGATAAATCGCTGGTGAGGAAGCAATGCGTTCGTCTCTTTGCTGTTCTCTCGGAGACTCATGGAAATTATCTTTCTCCTTACCTTGCGAAGATTCTTTCCAATATTACTCGCCGGTTCCGTGATCCTGATTCGTCAGTTCGATCCGCGTGCGTTAGCTCCGTAGCGGCATTAGCTTCTAATGTCACTAAACCGCCGTTTTCGACGTTTTTGAAGCCTTTAACTGATTCGCTTTTCACGGAGCAGGATTCCAATTCGCAGATCGGGGTGGCTTTGTCTTTGGCTTCGGCAATTGATGCAGCACCGGATCCGGATCCGCTTAAGCTCGGCAAACTCTTGCCGAGATTTGAGAAGCTTTTGAAATGCGAGAGTTTCAAGGCAAAGGCGGCACTCTTGACAATGATCGGGAGTATTATTGGATTGGATGGAGCTTTTGGAAATGGAGCTCTGAAAAATTTGGTCCCGTGCTTGGTTACATTCCTTAGCAGTGAGGATTGGGCGGCGAGAAAATCAGCGGCGGAGGCGCTGGGTAAACTAGCAGTCATGGAGAGGGATGCTCTGGCGGAATTCAAGGCTGGTTGCTTGAAAACGTTCGAGAGTCGGCGATTCGACAAGGTCAAGGCCGTACGGGAGGCGATGCGTCAGATGCTGGAGGCATGGAAGCAGATTCCTGATCTCTCGGACGAGGCGTCTGCACCTTATTCCCAATCCTCCTCGAAAGGTAGCATTGATGGACGTTATCTACCTGGATCCAAGAATATTTCTTCTGCTTGTCTTGATGCTCCTCTTCCGAGGAAAAATAGTAGCCTGGTTGGCAGGTCTACACCACCCGATGCCTCGTCTGCGACGACGGCGAGAAGGAGAAGCGCTTTGAACGGCGGTGACAAGAAAACAAGTTTGTCAATGTTCCAAAAGGTTGAGCGTAAGAAGCCTCTGGACTGGAAGGTGGAAGTCTCTGTTAGGAAGTCTCCCTCAGGAGATCTGAAGGAAAGAGATGAATACATACCAGATAGAAGGTTTAGTGAAAACACCAAGATTTCGAAACCAGAAACAAAGCGGGCACTCTTCAATAAGATTTCTGACGATAAGATAATTAAATTCGGTGGGTTCAGGTCTGGATCTCGCGTAGTTCCCTGTCCCGAGGAGGGCCCTGAATCGCCTGTTGTAGCAAGTAATGCAACCGACGATCTGCACAGGAACCACAAAGACTCTGAAGAATTGCATTTGATCCGTAATCAGCTTAATCAAATAGAAAAGCAGCAATCCAGTCTTCTAGACATACTCCAGAACTTCATTGGGAGTTCACAGAATGGAATGAGATCCCTGGAGACGCGTGTGCATGGTCTGGAATTGGCATTAGACGAGATCTCATATGATCTGGCTGCATCATCAACTGGAAGGATGTCTTATGCCAACACCCCCAAAATCACATGTTGCATGCTGCCTGGAGCTGATTTTTTTAGCTCAAGGTTCTGGAAGAGAGCAAATGGCAGAGGTTCAACACCAAAGGTTTCAATTCCCAGTGGTGTAACTCCACTGGCTCCAATGCGTAGCAGAGGTGATCGCCATGGAACTAATGGGGATGCTGGATCTATAAATTTGGAGAATCATAGCTTTCAGGTCCAGCGAAGGGGTGGCTTCATAGTGAATCCACTGGCTGTGAGGCAAGGTGAATCCAGGGTTGTCTCCGATGCCAGCACTTCCTTGAACGATTTGACTAGGAGGCACTAA 1908 48.58 MPLSASVTQSLKLRILSCLTKLSDRDTYSLAASELESIARSLDVSSLPIFLSCMYAIDASDKSLVRKQCVRLFAVLSETHGNYLSPYLAKILSNITRRFRDPDSSVRSACVSSVAALASNVTKPPFSTFLKPLTDSLFTEQDSNSQIGVALSLASAIDAAPDPDPLKLGKLLPRFEKLLKCESFKAKAALLTMIGSIIGLDGAFGNGALKNLVPCLVTFLSSEDWAARKSAAEALGKLAVMERDALAEFKAGCLKTFESRRFDKVKAVREAMRQMLEAWKQIPDLSDEASAPYSQSSSKGSIDGRYLPGSKNISSACLDAPLPRKNSSLVGRSTPPDASSATTARRRSALNGGDKKTSLSMFQKVERKKPLDWKVEVSVRKSPSGDLKERDEYIPDRRFSENTKISKPETKRALFNKISDDKIIKFGGFRSGSRVVPCPEEGPESPVVASNATDDLHRNHKDSEELHLIRNQLNQIEKQQSSLLDILQNFIGSSQNGMRSLETRVHGLELALDEISYDLAASSTGRMSYANTPKITCCMLPGADFFSSRFWKRANGRGSTPKVSIPSGVTPLAPMRSRGDRHGTNGDAGSINLENHSFQVQRRGGFIVNPLAVRQGESRVVSDASTSLNDLTRRH 635
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 643950 646700 + CmoCh11G001260.1 Cmo11g00126 390745

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00126 635 Coils Coil 459 479 - -
Cmo11g00126 635 PANTHER TORTIFOLIA1-LIKE PROTEIN 3 8 626 - -
Cmo11g00126 635 MobiDBLite consensus disorder prediction 327 358 - -
Cmo11g00126 635 MobiDBLite consensus disorder prediction 324 358 - -
Cmo11g00126 635 PANTHER MICROTUBULE-ASSOCIATED PROTEIN TORTIFOLIA1 8 626 IPR033337 GO:0005874|GO:0008017
Cmo11g00126 635 Gene3D - 3 333 IPR011989 -
Cmo11g00126 635 Pfam HEAT repeat 212 239 IPR000357 GO:0005515
Cmo11g00126 635 MobiDBLite consensus disorder prediction 557 587 - -
Cmo11g00126 635 SUPERFAMILY ARM repeat 14 282 IPR016024 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00126 - - - cmos:111440538 1195.65
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo10g00169 Cmo11g00126 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00126 Cmo-Chr11:643950 Cmo12g00642 Cmo-Chr12:4100743 1.02E-174 dispersed
Cmo10g00169 Cmo-Chr10:758189 Cmo11g00126 Cmo-Chr11:643950 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g669 . . . . . . . . . . Cma10g00157 . . Car11g00119 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo10g00169 Cmo11g00126 . . . . . . . . . . . . . . . . . . . . . Csa01g00189 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005976 1 1 1 1 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g00126 Cmo_Chr11 FPKM 7.709504 7.140701 10.324915 9.066126 15.095983 17.117083 15.963222 12.583963 12.039671 13.651998