Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00129 ATGTTGAGTTTCCCTCTCCACTTTTATGCTTTTCACAAACCCTCTCGCTGTCAACCCTGTGTTCATCGTCCTCGTCTCCACGTGATCATGCGAAGCATCACCGCCGCCGTCAACGAATCCGCCGCCACCGAGATCGGTGGCGGAGGTCCTGGTGAGATCATGCTGTTTGGTGTCAGAGTGGTGGTGGATTCGATGAGGAAGAGTGTGAGTTTGAATAATCTGTCGCAGTACGAGCAACCTCATGAGGCCGCCGATGTAATCGCCAACGATAACATGAACGACCCCGTTTCCGTCAATCACAAAGATGTTGTTGCTGCTGGTTATGCCTCTGCGGATGATGCTGTTCCCAACGCCTGTGGGAACCGCGAACGTGAGCGCAAGCGAGGTGTGCCTTGGACTGAGGAGGAGCACAAGCTGTTTTTAATTGGACTGCAACAAGTGGGGAAGGGGGATTGGAGAGGAATTTCTAGGAACTTTGTTAAGACTCGCACCCCAACTCAGGTCGCTAGCCACGCGCAGAAATACTATCTTCGCCGGAGCAATCTAAATCGCCGTCGCCGTAGATCTAGTCTTTTTGACATCACGACGGACACAGTCACGGCTGTTCCTATGGTTGAAAATTCGGTGCAGCTTCAAGAAACTGCTTCTCAATCCCATTCCTTGACTCCATCAAACCAACTCGAAATTTCCAAGAACAATGTAATTCCGGCGTTGCAAACTTTACCATTTTCATTTGGGCCAACACCATTTGCCACTCCAACCAAGAATCCGATGGAAAAGGGTGGTGGTCCTGGAGAAGTAAGCACAGAAAAAGATGGACCACTGAAGCTTGGCCTCACGAATTCCATCTATTCCTCTGATCAAACTCCAAACTTGAACTCAAACTCAGCAATGGAGTCATCAGCTCTATCTCTTCGCCTTGCATTAACATCTGAGCAGAGGGAGGCTTCAACAAGACACTCAACTTTCCAGTCCATGCCTAGTTTCAATAATGGTGAGGGCATCATAAGTGCTGCTTGA 1020 49.31 MLSFPLHFYAFHKPSRCQPCVHRPRLHVIMRSITAAVNESAATEIGGGGPGEIMLFGVRVVVDSMRKSVSLNNLSQYEQPHEAADVIANDNMNDPVSVNHKDVVAAGYASADDAVPNACGNRERERKRGVPWTEEEHKLFLIGLQQVGKGDWRGISRNFVKTRTPTQVASHAQKYYLRRSNLNRRRRRSSLFDITTDTVTAVPMVENSVQLQETASQSHSLTPSNQLEISKNNVIPALQTLPFSFGPTPFATPTKNPMEKGGGPGEVSTEKDGPLKLGLTNSIYSSDQTPNLNSNSAMESSALSLRLALTSEQREASTRHSTFQSMPSFNNGEGIISAA 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 653243 655951 + CmoCh11G001290.1 Cmo11g00129 390748

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00129 339 MobiDBLite consensus disorder prediction 245 298 - -
Cmo11g00129 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 124 180 IPR017930 -
Cmo11g00129 339 CDD SANT 131 175 IPR001005 -
Cmo11g00129 339 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 45 339 - -
Cmo11g00129 339 SMART sant 128 178 IPR001005 -
Cmo11g00129 339 ProSiteProfiles SANT domain profile. 127 180 IPR017884 -
Cmo11g00129 339 SUPERFAMILY Homeodomain-like 126 181 IPR009057 -
Cmo11g00129 339 MobiDBLite consensus disorder prediction 279 298 - -
Cmo11g00129 339 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 127 178 IPR006447 GO:0003677
Cmo11g00129 339 ProSiteProfiles Myb-like domain profile. 124 176 IPR001005 -
Cmo11g00129 339 MobiDBLite consensus disorder prediction 311 339 - -
Cmo11g00129 339 Gene3D - 130 182 - -
Cmo11g00129 339 Pfam Myb-like DNA-binding domain 131 175 IPR001005 -
Cmo11g00129 339 PANTHER KIN2 45 339 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00129 - - - csv:101214626 447.588
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00129 Cmo-Chr11:653243 Cmo16g01176 Cmo-Chr16:8375614 1.80E-49 dispersed
Cmo10g00171 Cmo-Chr10:772495 Cmo11g00129 Cmo-Chr11:653243 3.53E-164 wgd
Cmo11g00129 Cmo-Chr11:653243 Cmo13g00941 Cmo-Chr13:8245096 8.85E-63 wgd
Cmo11g00129 Cmo-Chr11:653243 Cmo18g00110 Cmo-Chr18:758497 8.62E-76 wgd
Cmo11g00129 Cmo-Chr11:653243 Cmo04g01686 Cmo-Chr4:8554130 2.02E-43 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g619 . . Bda06g00531 . . Bpe13g00303 . Bma12g00975 . . . Cma11g00116 . . . . . . . . . . . . Cla06g01560 Cam06g1724 Cec06g1785 Cco06g1785 Clacu06g1692 Cmu06g1637 Cre06g2448 . Cone16ag0195 . . Lsi02g00100 Csa01g00579 Chy12g01517 Cme12g01963 . Blo15g00328 . . Bpe07g00765 . . . . . Cmo11g00129 . . . . . . Bhi08g01122 . . . Hepe07g2481 . . Cla04g01174 Cam04g1231 Cec01g1742 Cco01g1788 Clacu04g1258 Cmu04g1237 Cre01g1532 Lsi06g01434 Csa01g00271 Chy02g02463 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005075 1 1 2 0 2 1 3 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10516 PF00249 Myb_DNA-binding 2.20E-10 CL0123 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g00129 Cmo_Chr11 FPKM 10.430686 11.385517 9.174787 9.64659 6.217728 7.315879 6.576164 6.31187 7.134621 7.427207