Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo11g00131 | ATGGTGTATGCATCTACTCATAACAAGAACATGCACGCCCTTCTAACAGCCAAACTCACCAAATTGACTCTCCCTTCCTCTTCTTCTTCTCCTCCTCCTCCTCCTCCCCCTCCTCCTCCTTCTTCTTCATCCACGGCCGCCCTTCTTGACTTCGACTTCTCTGACGTATTCGGCCCCACAAATTCCTCTTTACCATCTTTCCCCGGGGACCCACAGCACAATGAACAACAACCAGCGGTCATTCATAACAGATCTCACTCATTTGTGGGTCCGTCTCCACGGTTAACTCCCCCGTCTTCCCTTTCTTTTTTCCGGGAAGTTAAATCACAGATCGAGGAGGAAGAAGATGACCTAGAAATCTCGACTGGCGATGGAGTTCAAAAGGAGAAGGGGGCGGATGAGAGCGAGAATGACGGTGGAGAAAATTCAGAGGGGAAGGTTGGAGTTGGGGATTTCGATATTCTTCGAGTTGTGGGAAAAGGGGCGTTTGGGAAGGTCTTTCTAGTGAGGAAGAAAGGGGATTCGAAAGGAAACGGTCCCAATAATGATGGGATTTACGCCATGAAAGTGATGAGAAAGGATACCATTATAAAGAAGAATCATGTGGATTATATGAAGGCTGAGAGAGATATTCTCACAAAAGTTTCGCACCCTTTCATTGTTCAACTCCGCTACTCTTTCCAGTCCAAATCAAAACTCTATTTGATTCTTGATTTCATAAATGGGGGGCATCTGTTCTTCCATCTGTACCGGCAGGGGATCTTTAGTGAGGATCAGGCAAGGGTCTATGCTGCTGAGATCGTGTCAGCTGTTTCGCATCTTCATGACTGCGGCATTGTGCACCGGGATCTCAAGCCTGAGAACATTCTTATGGATGCTGATGGCCATGTTGTCCTTACGGATTTTGGACTGGCAAAGGAAATTGATGAATCGAGTCGGTCGAATTCGTTGTGTGGAACAACAGAATACATGGCTCCGGAAATCTTGCTTTCTAAAGGTCACAACAAGGATGCTGATTGGTGGAGCGTCGGAGTTCTTTTGTATGAGATGCTTAGTGGCAAGGTACGTGAATGGCAACCACCATTCACACACGCTAATAGAAAGAAGCTTCAAGAGAGAATAATCAAAGAGAAAGTGAAACTTCCATCATACCTGAGCACTGAAGCTCACTCTTTGCTCAGAGGGCTATTACAAAAGGATCCTTCTAAAAGATTGGGAAGTGGACCCAACAGAGGGGCGGACATAAAAAATCACAAATGGTTTCGACCTGTGAACTGGAAGAAATTGGAATGTAGGGAGCTGCAACCAAAATTCAAGCCGGATGTCAAGGGAAATGACTGCACAGCAAATTTTGATAATTGTTGGACGACGATGCCCCCCGACGACTCGCCAGCTCCAACGCCAACCGACGGAGGACACTTCCACGGATACTCGTATGTTGCTCCAGACCCTTGGCTTTCATCATCTGGATAG | 1473 | 46.78 | MVYASTHNKNMHALLTAKLTKLTLPSSSSSPPPPPPPPPPSSSSTAALLDFDFSDVFGPTNSSLPSFPGDPQHNEQQPAVIHNRSHSFVGPSPRLTPPSSLSFFREVKSQIEEEEDDLEISTGDGVQKEKGADESENDGGENSEGKVGVGDFDILRVVGKGAFGKVFLVRKKGDSKGNGPNNDGIYAMKVMRKDTIIKKNHVDYMKAERDILTKVSHPFIVQLRYSFQSKSKLYLILDFINGGHLFFHLYRQGIFSEDQARVYAAEIVSAVSHLHDCGIVHRDLKPENILMDADGHVVLTDFGLAKEIDESSRSNSLCGTTEYMAPEILLSKGHNKDADWWSVGVLLYEMLSGKVREWQPPFTHANRKKLQERIIKEKVKLPSYLSTEAHSLLRGLLQKDPSKRLGSGPNRGADIKNHKWFRPVNWKKLECRELQPKFKPDVKGNDCTANFDNCWTTMPPDDSPAPTPTDGGHFHGYSYVAPDPWLSSSG | 490 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 656883 | 659897 | - | CmoCh11G001310.1 | Cmo11g00131 | 390750 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo11g00131 | 490 | MobiDBLite | consensus disorder prediction | 111 | 146 | - | - | |
Cmo11g00131 | 490 | MobiDBLite | consensus disorder prediction | 1 | 77 | - | - | |
Cmo11g00131 | 490 | SMART | serkin_6 | 152 | 421 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo11g00131 | 490 | MobiDBLite | consensus disorder prediction | 121 | 141 | - | - | |
Cmo11g00131 | 490 | SMART | pkinase_C_6 | 422 | 481 | IPR000961 | GO:0004674|GO:0005524|GO:0006468 | |
Cmo11g00131 | 490 | PANTHER | NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE | 7 | 488 | - | - | |
Cmo11g00131 | 490 | PANTHER | RIBOSOMAL PROTEIN S6 KINASE | 7 | 488 | - | - | |
Cmo11g00131 | 490 | MobiDBLite | consensus disorder prediction | 56 | 77 | - | - | |
Cmo11g00131 | 490 | Gene3D | Transferase(Phosphotransferase) domain 1 | 240 | 440 | - | - | |
Cmo11g00131 | 490 | Pfam | Protein kinase domain | 153 | 421 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo11g00131 | 490 | MobiDBLite | consensus disorder prediction | 27 | 43 | - | - | |
Cmo11g00131 | 490 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 279 | 291 | IPR008271 | GO:0004672|GO:0006468 | |
Cmo11g00131 | 490 | Pfam | Protein kinase C terminal domain | 442 | 479 | IPR017892 | GO:0004674|GO:0005524|GO:0006468 | |
Cmo11g00131 | 490 | CDD | STKc_AGC | 158 | 421 | IPR045270 | GO:0004674|GO:0005524 | |
Cmo11g00131 | 490 | ProSiteProfiles | Protein kinase domain profile. | 152 | 421 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo11g00131 | 490 | SUPERFAMILY | Protein kinase-like (PK-like) | 149 | 478 | IPR011009 | - | |
Cmo11g00131 | 490 | ProSiteProfiles | AGC-kinase C-terminal domain profile. | 422 | 489 | IPR000961 | GO:0004674|GO:0005524|GO:0006468 | |
Cmo11g00131 | 490 | Gene3D | Phosphorylase Kinase; domain 1 | 151 | 463 | - | - | |
Cmo11g00131 | 490 | ProSitePatterns | Protein kinases ATP-binding region signature. | 158 | 189 | IPR017441 | GO:0005524 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo04g01480 | Cmo-Chr4:7585406 | Cmo11g00131 | Cmo-Chr11:656883 | 5.31E-61 | dispersed | |
Cmo11g00131 | Cmo-Chr11:656883 | Cmo15g01451 | Cmo-Chr15:9842541 | 1.82E-66 | dispersed | |
Cmo10g00172 | Cmo-Chr10:774296 | Cmo11g00131 | Cmo-Chr11:656883 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
74641 | PF00069 | Pkinase | 2.70E-69 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo11g00131 | K04688 | - | csv:101214867 | 769.229 |