Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00133 ATGTTTTGGGATTGGGAGGGTCGGAGTTGGAGAATTTTGGCTTTGATGAGTAAATCTGGGCTCCTACAAGGAAAACCAACAAATTTAGTTGTGAATGGATGTCAAAATTCAGCTGCGTTTGGATTGGCGAATCATCGAAGTCCAGCCGGAGTGGACGTGGGTCGAAGCCCAAAAGCCAGAAGGTGGGCAATTTCTGAAGCCCCAATGATCCGAAACTATAAAGTATCGCCAAGCGCGGCCAATTTGTTGTTTAATCGCCTCGCGCTTTCACCTTTCCAACAAACACTTCTTCCATTATCGTGTTGCTCATCTGGGTCCCCGAAAATGGCGAGTAACGAGAGCATCAAATCAGGAAATGAAGAACAATTGAAGCCCATATTTGAGCAGAAACGGGTTCTTCGATCCAGCGTTCGAAAAGCACTCAAAGCCATGGACCCTTCCCTCAGATCCCATGAAGACAATGCAATTCAGAGTATCGTTTTGGAGGCCCCGTGGTTTAAATCTAGTCAGAGATTATGTGCTTATGTGAGTTGCAGTGCCTTAAGAGAAGTTGATACGTCGAGACTGTTATCAGAGACTTTGCAACACCCACCAAAAGATGGTTATCCGAAGAAGATTTATGTCCCGCGTGTGGAGGACAAGAATAGTCATATGCGGATGTTCAATATTTCACGTATGGATGATCTTATTGCAAATTCAATGAATATCTTAGAACCAGCTCCAGTGGATGGTGATGGAAATCAACGTGAAGATGTTATGCAGACAAAAGACCCCATCGATTTACTCCTCTTACCAGGACTAGCATTTGATAAATCAGGAAGACGACTAGGCCGAGGGGGAGGTTATTATGATACCTTCCTAAAGAACTACCAAGAGCTTGCAAAGGCGCGGAATTGGAAGCAGCCCCTCCTTGTTGCACTGTCCTATTCAGTACAGATAATGGATGAAGGAATTATACCACTCACTCCAAATGATGTCTTAGTCGATGCTCTTGTAACACCATCTGGTGTGATTCCCATCAGCCCAGCTGGATTGGACAAGTATGATACTGAACTCGAAGAATCAACCTCTAATGATGCCATCTTTGACAATCTGGAGCTTGGAATTCTTAAAGCTGTTAAATTATATGCAGCATCGAGAAAACCATGGCATATTATTGACAAAAGAAACCCTTTTTTGGTTGTTTTCAAACAAACAGTTGACATTCTGCAAACACTTTCATCATCTGGAATAGAAGGTGTTGCTTGTTATCAGGAAATGAAGCTTGGAAGGCTCCCCAACAGATTATGTCCATATCATTATAATTTTTCCATTGACATATTGCTTGAGAAAGAAGAGTTGAAGGAGACAGCTGATCCTGATCCGTTGCAGGACTTCTGTGTTGCTGATTTAAATGCTACTGTATCTCTTAATGGCTTCCCTTGCAAGCCAGTTGCAGAAGTTACTTCAGATGATTTCTTCTTTGATGGATTGAGCAAAGAGGGCAACACAGACAATCCTTTCGGTTTTGCTGTTGCACAAGGAAATGTTCTTTCATTTCCAGGACTCAATACGCTTGGGATATCCATGAACCGTGTCGACCTTGCTCCTAGAGGAATAAATGCACCTCACTCGCATCCTCGTGCCACCGAAAGCATTGTCGTTATTAAAGGGAAGGTTCTTGTTGGGTTTGTGTCGACAAGTAATGTGTACTTTTACAAGGTTTTGACTGTAGGGCAGATGTTTGTCATTCCCAGAGGACTTATTCATTTCCAGTATAATGTTGGACATAGCAAAGCAATTCTGCTCACAGCTTTCAACAGTCAGTTGCCCGGGGCTGTGATCGTCTCTCGAACTTTATTCGCTTCAAATCCTCCGATTCCCAATCAAATTCTGACCAAGACCTTCCGAGTCGATGATGATGTTATCAACAGCATAAAGTCCAAGTTTGCTTAG 1935 43.0 MFWDWEGRSWRILALMSKSGLLQGKPTNLVVNGCQNSAAFGLANHRSPAGVDVGRSPKARRWAISEAPMIRNYKVSPSAANLLFNRLALSPFQQTLLPLSCCSSGSPKMASNESIKSGNEEQLKPIFEQKRVLRSSVRKALKAMDPSLRSHEDNAIQSIVLEAPWFKSSQRLCAYVSCSALREVDTSRLLSETLQHPPKDGYPKKIYVPRVEDKNSHMRMFNISRMDDLIANSMNILEPAPVDGDGNQREDVMQTKDPIDLLLLPGLAFDKSGRRLGRGGGYYDTFLKNYQELAKARNWKQPLLVALSYSVQIMDEGIIPLTPNDVLVDALVTPSGVIPISPAGLDKYDTELEESTSNDAIFDNLELGILKAVKLYAASRKPWHIIDKRNPFLVVFKQTVDILQTLSSSGIEGVACYQEMKLGRLPNRLCPYHYNFSIDILLEKEELKETADPDPLQDFCVADLNATVSLNGFPCKPVAEVTSDDFFFDGLSKEGNTDNPFGFAVAQGNVLSFPGLNTLGISMNRVDLAPRGINAPHSHPRATESIVVIKGKVLVGFVSTSNVYFYKVLTVGQMFVIPRGLIHFQYNVGHSKAILLTAFNSQLPGAVIVSRTLFASNPPIPNQILTKTFRVDDDVINSIKSKFA 644
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 674848 680364 + CmoCh11G001330.1 Cmo11g00133 390752

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00133 644 CDD cupin_OxOx 452 643 - -
Cmo11g00133 644 SMART Cupin_1_3 489 637 IPR006045 -
Cmo11g00133 644 TIGRFAM MTHFS_bact: 5-formyltetrahydrofolate cyclo-ligase 130 334 IPR002698 -
Cmo11g00133 644 PRINTS Germin signature 537 557 IPR001929 GO:0030145
Cmo11g00133 644 PRINTS Germin signature 567 587 IPR001929 GO:0030145
Cmo11g00133 644 PRINTS Germin signature 600 615 IPR001929 GO:0030145
Cmo11g00133 644 Gene3D - 123 337 IPR024185 -
Cmo11g00133 644 PANTHER ATPASE INHIBITOR/5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE 103 349 - -
Cmo11g00133 644 SUPERFAMILY NagB/RpiA/CoA transferase-like 129 341 IPR037171 -
Cmo11g00133 644 Gene3D Jelly Rolls 451 644 IPR014710 -
Cmo11g00133 644 Pfam 5-formyltetrahydrofolate cyclo-ligase family 130 334 IPR002698 -
Cmo11g00133 644 PANTHER 5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE, MITOCHONDRIAL-LIKE ISOFORM X1 103 349 - -
Cmo11g00133 644 Pfam Cupin 491 634 IPR006045 -
Cmo11g00133 644 SUPERFAMILY RmlC-like cupins 452 643 IPR011051 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00133 K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2] - csv:101211739 531.176
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo10g00175 Cmo11g00133 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00133 Cmo-Chr11:674848 Cmo03g01454 Cmo-Chr3:10499781 1.17E-66 dispersed
Cmo10g00175 Cmo-Chr10:800474 Cmo11g00133 Cmo-Chr11:674848 1.37E-98 transposed
Cmo10g00173 Cmo-Chr10:797104 Cmo11g00133 Cmo-Chr11:674848 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g471 . . . . Bpe12g00568 . . . . . Cma10g00163 Cma11g00176 . . Sed08g0183 . . Bhi02g00376 Tan09g2181 Cmetu02g1544 . Hepe09g0155 . . Cla06g01623 Cam06g1804 Cec06g1855 Cco06g1861 Clacu06g1764 Cmu06g1708 Cre06g2526 . . Cone13ag0100 Cone19ag0104 . . . . Blo13g00033 . . . . . . Bma08g00195 . Cmo10g00175 Cmo11g00133 . . . . . . . . . . . . . . . . . . . . Lsi06g01504 Csa01g00195 Chy02g02537 Cme02g01921
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007790 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g00133 Cmo_Chr11 FPKM 5.665391 6.000229 6.86201 5.480316 14.334807 15.318377 13.03758 1.92578 1.681676 1.253339