Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00134 ATGGATCCTCCACTCGTCAATGAATCTTCCTTCTCCGCTGCCAATCCTTCTGCTTACAGCTTGGCCGCGATTTGGCCTTTCGGGGGGGAGCAGGGTGGGAGCACATTGGGACTTCGAATGGCTAATTTGGGTCAGATTCTTGGTGGCTTCCCAGAGAGCTCCACGAATCGCGATGGATCAATGGAGGAATCCACAGTGACGGAGCAGAGTGGCGGTGGGAGGAAGAGGAAGGATGTGAGCTCCGAGGATGAATCTTCCAGAATGGTTTCCACTAGTAGTGCGAATCAATTGAATAACTCAAAGGGTAAACGGATGAAAGTAGTGGAATCCAGGGATGAAAATGGTGATATAAAAGCTGAAGTGGAATCTAGCTCAGGAGATGGTAAGAAGGCGGCTGAGCAAAGCCCGAAACCTTCTGAACCACCAAAAGATTACATCCATGTGAGAGCGAGAAGGGGCCAAGCTACTGATAGCCATAGTTTAGCAGAAAGAGCAAGAAGAGAGAAGATCAGTGAGAGAATGAAAATGTTGCAGGACTTGGTTCCAGGTTGTAACAAGGTCATTGGAAAAGCACTTGTCCTTGATGAGATAATAAATTATATCCAATCATTGCAACGTCAGGTCGAGTTCCTCTCCATGAAGCTTGAAACTGTGAATTCCAGGATGAACATAAGCCCTGGCATTGAAGGTTTTACAGCAAAAAATATTGTTAATCAACCATATGATGCAGCAGCTGGAATATTATATGGTTCACAAACAGCAAGAGAATATAGCCAAGGTGCACAACCTGAATGGTTGCATATGCAGATCGGTGGAAGTTTTGAAAGAACATCTTAG 837 45.4 MDPPLVNESSFSAANPSAYSLAAIWPFGGEQGGSTLGLRMANLGQILGGFPESSTNRDGSMEESTVTEQSGGGRKRKDVSSEDESSRMVSTSSANQLNNSKGKRMKVVESRDENGDIKAEVESSSGDGKKAAEQSPKPSEPPKDYIHVRARRGQATDSHSLAERARREKISERMKMLQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLETVNSRMNISPGIEGFTAKNIVNQPYDAAAGILYGSQTAREYSQGAQPEWLHMQIGGSFERTS 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 680598 684108 - CmoCh11G001340.1 Cmo11g00134 390753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00134 278 CDD bHLH_AtBPE_like 144 226 - -
Cmo11g00134 278 Gene3D - 151 225 IPR036638 GO:0046983
Cmo11g00134 278 PANTHER MYC-TYPE, BASIC HELIX-LOOP-HELIX (BHLH) DOMAIN-CONTAINING PROTEIN-RELATED 1 277 - -
Cmo11g00134 278 MobiDBLite consensus disorder prediction 69 84 - -
Cmo11g00134 278 SMART finulus 160 210 IPR011598 GO:0046983
Cmo11g00134 278 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 152 224 IPR036638 GO:0046983
Cmo11g00134 278 MobiDBLite consensus disorder prediction 85 103 - -
Cmo11g00134 278 Pfam Helix-loop-helix DNA-binding domain 158 205 IPR011598 GO:0046983
Cmo11g00134 278 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 277 IPR024097 GO:0006355
Cmo11g00134 278 Coils Coil 201 221 - -
Cmo11g00134 278 MobiDBLite consensus disorder prediction 46 144 - -
Cmo11g00134 278 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 154 204 IPR011598 GO:0046983
Cmo11g00134 278 MobiDBLite consensus disorder prediction 48 68 - -
Cmo11g00134 278 MobiDBLite consensus disorder prediction 104 144 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo10g00176 Cmo11g00134 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00968 Cmo-Chr5:7792316 Cmo11g00134 Cmo-Chr11:680598 1.84E-92 dispersed
Cmo11g00134 Cmo-Chr11:680598 Cmo12g00637 Cmo-Chr12:4055791 2.52E-90 dispersed
Cmo10g00176 Cmo-Chr10:801591 Cmo11g00134 Cmo-Chr11:680598 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10517 PF00010 HLH 3.60E-08 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00134 - - csv:101215588 486.493