Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00142 ATGGGGCCTAAGAAGAAAATCATTGATCCGCGTTCTAAACAATCTCCTGCTGCTCGTGGAGTTGTTGTGGATGTTCCAAGCTCAGCGAACGCAGCCGACCAGAATTCAATACCTGAAAAGGCTAGTAACCACAACCAAAGTAGGATCGAGCCGGTGCTTCTCAATGGACCGGATGGGTTGTCTTATTCCACAATTAAACTCGAATGCGAGCGGGCTCTTACCGCGCTTCGGCGCGGGAACCACACTAAGGCACTGAGGCTTATGAAGGAGTTGAGCTCCAGAAATGAGAACTCTGTTCACTCTGCATTGATTCATCGGGTTCAGGGTACTATTTGTGTAAAGGTAGCGTCGATTATTGATGACCTGAATACAAAGCAGCGGCATTTGAAGAATGCGATTGAGTCTGCTCGTAAAGCAGTCCAGCTCTCACCTAACTCTATCGAGTTTTCCCATTTCTATGCAAATTTGCTGTACGAGGTTGCAAATGATGCGAAGGAGTATGAGGAGGTGGTGCAGGAGTGTGAGCGGGCCCTTGGCATTGAAAATCCAATCGATCCCGCCAAGGAGAGTTTGCAGGATGAAAAGAGTCAGAAGATACCTACTGCAGAAGCACGGATTACACATGTTCAAACTGAATTGAGGCAGTTAATTCAAAAGTCAAATATATATTCGATATCATCTTGGATGAAGAACTTGGGTAACGGGGAGGAGAAGTTTAGGTTGATTCCGATAAGAAGAGTGACAGAGGATCCAATGGAGGTGAGGTTGGTTCAGGCTAGAAGGACAAATGAAATTAAGAAGGCAACCAAAACACCTGAGGAGAGAAGAAAGGAGATTGAAGTCCGTGTTGCTGCTGCAAGGCTTTTGCAACAGAAGTGTGAGACACCTCAAATTCAAAACGAAGAAGGTAAAGTTGATCGGTCCCTAGATTCATCTTTAGGATCTGGTACAAGAGCTGGCGAGCGACGGAAACATGGCAATTTACGGAAACAGGGATCTTCAGCTGAAAGGAGGGATTTGGTTCATTCTTTTTGGAATTCCATGAGTATAGAAGCAAAGAAAGATTTGCTTAAGATCAAGATAAGTAATCTTAAGGCGCATTTTAGTTCTTCAAAGGATGCTTCGGCGAATGAAGTTATTTCAGAAGCTTTGTCCTTTTATAATGCCAATAAAACATGGAAATTTTGGGTTTGCTGCAGATGTGATGAGAAATTTGTGGATTCGGATTCCCATATGCACCATGTGGTTCAAGAGCACATGGGTAACCTTTTACCAAAAATGCAATCAATTTTGCCCCAGAATGTTGATGATGAATGGACCAAAATGATTCTTAATTGCTCCTGGAAAGCATTGGATGTATCAGCTGCAGCTAAAATGCTCACCGCTGAAACAAAATGCAAAGATTCTGAGTTGGTTGTAGGTATCTTCCCACAGCATCATTCAGAATGTGATAACTATTTCAAAGATGCATGGGGTTCTTCTCCAGAGAAGCATAAATATGTGGATAGTTTAAATGAATGCCGTCTTTCTGAAAAAATTACCAACAACGGATCTAAGACCTATCTTGAAAACCAGGGTTCTGTGGCATCATATTCCTCATCTGACAGCTTTCCTGTATCTGATGATCCTGAGCGTACAAAGCTTCTTGAGAAAATTCATGCAGTATTTGAGTTGCTTATAAGACATAAATATCTTGCTGCTAGCCATTTAAACAAGGTTATACAATTTGCAATGGATGAGCTACAGGGTCTTGCTTCTGGATCTCATCTTCTAAACCAGGGTCTGGACCAAACACCACTATGTATTTGCTTTCTAGGTGCTTCTCAGCTTAGGAAAATCCTCAAGTTTTTGCAAGAATTATCTCAGTCTTGTGGTATTGGTAGATACTCTGATAAAAGTACTGGTCAAATTGAAGATTCAAAGAGTGATAAACAAGCGGTTGAAGTCAGAGAGAAAGTTGTTCTCAGTGAAGATGCGTCACTTCTCCTCCTGAATGAGTGTTTGCTGTCATCTGATATCACTCATGCTGATGTTCCGGTTGCAGCTGCAGATCATATGCTTGCTGCAACTGCCAAGGATGTTACTTCAAATGGGGTTCTTTCTGGTGTTGACCCCTTTCTTTCCTGGATATATGCAGGTCCCTCTAGTGGGGAACAGTTGGTCTCATGGGAAAAAACAAAGGAAGAAAAGATACAGCGACGAATGGAAATTTTTCAAATGCTTGAGAAGGAATTTTACCATCTGCAGAGTCTTTGTGAGAGAAAATGTGAGCATTTGAACTACGAGGAAGCGTTGCAGTCAGTGGAGGATCTCTGCCTTGAAGAGGGCAAGAAGAGGGAAGCTTTGAATGAATTTATCCCCAAGAGTTATGAGTCAGTCCTGAGGAAGCGAAGGGAGGAGCTTATTGAGGCTGAAAATGGTGTGCTGTTTATCAGCAGTAGGTTTGAGTTAGATGCTGTAACTAATGTTTTGAAAGAAGCAGAAACTCTGAATGTTAATCAATTTGGATACCAGGAAACTTTTGCCAGCGTGTCTCCACAGTTAGGAGATCTGGAATCTGGTGAAGATGAAGAACGGAGAGCTAAGGATTATTTGCATGAAGTTGATACTTGTATAGAAGTTGCAATACAGAGACAGAAGGAACAGTTATCTATTGAGATTAGCAAAATTGATGCCCGCATCATGCGAAATGTTACTGGAATGCAACAGTTGGAACTTAAGCTCGAACCTGTTTCTGCACATGATTATCAATCAATATTGTTGCCTCTTGTAAACTCATACTTGAGGGCACATTTAGAAGATTTGGCTGAAAAAGATGCCACAAAGAAGTCTGATGCTGCAAGCGAAGCATTTTTAGCTGAATTGGCACTGGATTCGAAGAAGGGTATCAGAGGAGGAACTGATAATTCAAGACATGCACATGAAAAACCAAAGGAAAAGAAAAAGAGCAAGGAGTTTAGGAAAGTCAAGGACTCTAAGGTGGTCAGTGGTCCTGAGCAGGATGTGCATCGTGGTCAGGCTGTCGATGGAGATCCCTTTCCAGTTTCATCTGATGGTGATGCTGCAGAGGTGGATATTGCTGTTTTTGAGAATGTTGATGCGTTAAGACTACAGGAGGAAGAGCTCAGACGCAAAATTGAGCTGGAAGCTGATGAAAGAAAGCTAGAAGAGACTTTGGAGTATCAAAGACGAATTGAGAATGAGGCTAAACAAAAGCATTTGGCTGAACTGCAAAAGAAATCTGCTCAGACAACGCATAATAATCTCGCTGGACTTGTCCCCAATGTTGAAGGTGCTGATAAACATTTCAAGCCTTCTGTGGTGGATAAATTGGCAGAAAATGATTTGGTTTCCGACTTGTCTAGGAATGGTCCTGCCATGCGAAATGCTTTGTCAGGTGTCTCCAATGTAGGAGTTCTAGAGAATAGTCTGCCGTCATCTGATAGGAAGAAGGGGAGGAAAGGTAGACGACACAAGGTTTCAATCAAACCAGTAGATGGAAATCAGCCTTCACCATCTGATAAGGATAACGTAGCCTTTGACAACCAATTGACTGAACAAGTTAGATATCATGGCAATCCCCTGCAAGATAGTGTTAATCCACTTCTTGAAGATAATAGTACAAAGACTTCGAGACAACATGTGGAGGATGAAGAGGAAAGATTTCAAGCTGATCTTAAGAAGGCTGTACGCCAGAGCCTTGATGCATTTCAAGAACAGCAGAAATTACCCTTGATTATGAGTTCCAGGACACCATTGATCAGTCATGGTGAAGTAGATAGTAATGGTCTTCCATCAAATGAACGCAATGTAGAAAATGTGCAGGCAGCTGGTATGTTTGGTACAGGACTTAAGAATGAAGTTGGTGAATATAATTGCTTTTTGAATGTGATTATTCAGTCATTATGGCATTTAAGACGGTTTCGAGAAGAGTTCCTGAGAAGATCTATGACTGAGCATGTTCATGTTGGGGATCCCTGTGTTGTTTGTGCATTATATGAAATTTTTGCTGCCTTGAACAAGGCATCTGCAGATTCTAGAAGAGAAGCAGTCGCCCCCACTTCTTTGAGAGTAGCTCTGAGCAATCTTTGTCCTGATAGTAATTTCTTCCAAGAGGGTCAGATGAATGATGCCTCTGAAGTTTTGGCAGTCATATTTGATTGCCTACACCAGTCATTGACTGCTAGTTCGAGTGTTTCTGATACAGACACAATAGAAAGCAATTGCATAGGGTCTTGGGACTGTTCAAGTGACACTTGTTTGGTACATTCCATCTTTGGAATGGACATTTTTGAACGAATGAATTGCTACAGTTGTGGCCTGGAATCTAGACATCTGAAGTACACTTCCTTCTTTCACAATATAAATGCTAGTGCTCTTCGGACAACGAAGGTTATGTGTTCAGAAAGCTCCTTCGATGAACTTCTGAATGTTGTTGAAATGAATCATCAGCTAGTATGTGATCAGGATGTTGGTGGATGTGGAAAACTCAATTACATTCATCACTTCCTTTCCGCACCACCACATGTATTCACAACAGTCTTGGGCTGGCAGAAAACTTGTGAGAGTGCTGATGACATCACAGAGACATTAGCTGCTCTAAGTACTGAGATAGATATCAGTGTTCTTTATCGGGGTCTAGATCCAAAGAATGTCCATAATTTGGTATCAGTGGTTTGCTACTATGGTCAACACTATCATTGTTTTGCGTACAGTTGTGACAAGAAATGCTGGATAATGTATGATGATAGAACCGTTAAGGTAATTGGTGGCTGGGCTGATGTTCTTACCATGTGTGAAAAAGGACACTTACAACCTCAGGTTCTTTTCTTTGAAGCTGTAAATTAG 4848 41.73 MGPKKKIIDPRSKQSPAARGVVVDVPSSANAADQNSIPEKASNHNQSRIEPVLLNGPDGLSYSTIKLECERALTALRRGNHTKALRLMKELSSRNENSVHSALIHRVQGTICVKVASIIDDLNTKQRHLKNAIESARKAVQLSPNSIEFSHFYANLLYEVANDAKEYEEVVQECERALGIENPIDPAKESLQDEKSQKIPTAEARITHVQTELRQLIQKSNIYSISSWMKNLGNGEEKFRLIPIRRVTEDPMEVRLVQARRTNEIKKATKTPEERRKEIEVRVAAARLLQQKCETPQIQNEEGKVDRSLDSSLGSGTRAGERRKHGNLRKQGSSAERRDLVHSFWNSMSIEAKKDLLKIKISNLKAHFSSSKDASANEVISEALSFYNANKTWKFWVCCRCDEKFVDSDSHMHHVVQEHMGNLLPKMQSILPQNVDDEWTKMILNCSWKALDVSAAAKMLTAETKCKDSELVVGIFPQHHSECDNYFKDAWGSSPEKHKYVDSLNECRLSEKITNNGSKTYLENQGSVASYSSSDSFPVSDDPERTKLLEKIHAVFELLIRHKYLAASHLNKVIQFAMDELQGLASGSHLLNQGLDQTPLCICFLGASQLRKILKFLQELSQSCGIGRYSDKSTGQIEDSKSDKQAVEVREKVVLSEDASLLLLNECLLSSDITHADVPVAAADHMLAATAKDVTSNGVLSGVDPFLSWIYAGPSSGEQLVSWEKTKEEKIQRRMEIFQMLEKEFYHLQSLCERKCEHLNYEEALQSVEDLCLEEGKKREALNEFIPKSYESVLRKRREELIEAENGVLFISSRFELDAVTNVLKEAETLNVNQFGYQETFASVSPQLGDLESGEDEERRAKDYLHEVDTCIEVAIQRQKEQLSIEISKIDARIMRNVTGMQQLELKLEPVSAHDYQSILLPLVNSYLRAHLEDLAEKDATKKSDAASEAFLAELALDSKKGIRGGTDNSRHAHEKPKEKKKSKEFRKVKDSKVVSGPEQDVHRGQAVDGDPFPVSSDGDAAEVDIAVFENVDALRLQEEELRRKIELEADERKLEETLEYQRRIENEAKQKHLAELQKKSAQTTHNNLAGLVPNVEGADKHFKPSVVDKLAENDLVSDLSRNGPAMRNALSGVSNVGVLENSLPSSDRKKGRKGRRHKVSIKPVDGNQPSPSDKDNVAFDNQLTEQVRYHGNPLQDSVNPLLEDNSTKTSRQHVEDEEERFQADLKKAVRQSLDAFQEQQKLPLIMSSRTPLISHGEVDSNGLPSNERNVENVQAAGMFGTGLKNEVGEYNCFLNVIIQSLWHLRRFREEFLRRSMTEHVHVGDPCVVCALYEIFAALNKASADSRREAVAPTSLRVALSNLCPDSNFFQEGQMNDASEVLAVIFDCLHQSLTASSSVSDTDTIESNCIGSWDCSSDTCLVHSIFGMDIFERMNCYSCGLESRHLKYTSFFHNINASALRTTKVMCSESSFDELLNVVEMNHQLVCDQDVGGCGKLNYIHHFLSAPPHVFTTVLGWQKTCESADDITETLAALSTEIDISVLYRGLDPKNVHNLVSVVCYYGQHYHCFAYSCDKKCWIMYDDRTVKVIGGWADVLTMCEKGHLQPQVLFFEAVN 1615
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 711512 720384 - CmoCh11G001420.1 Cmo11g00142 390761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00142 1615 MobiDBLite consensus disorder prediction 297 335 - -
Cmo11g00142 1615 PANTHER UBIQUITIN SPECIFIC PROTEINASE 1 1615 - -
Cmo11g00142 1615 PANTHER INACTIVE UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 53-LIKE 1 1615 - -
Cmo11g00142 1615 Coils Coil 1212 1232 - -
Cmo11g00142 1615 MobiDBLite consensus disorder prediction 962 1015 - -
Cmo11g00142 1615 Gene3D Tetratricopeptide repeat domain 62 202 IPR011990 GO:0005515
Cmo11g00142 1615 Pfam Protein of unknown function (DUF627) 71 181 IPR006866 -
Cmo11g00142 1615 SUPERFAMILY Cysteine proteinases 1282 1612 IPR038765 -
Cmo11g00142 1615 MobiDBLite consensus disorder prediction 317 335 - -
Cmo11g00142 1615 Coils Coil 119 139 - -
Cmo11g00142 1615 Coils Coil 1032 1068 - -
Cmo11g00142 1615 MobiDBLite consensus disorder prediction 1 50 - -
Cmo11g00142 1615 Gene3D Cysteine proteinases 1266 1613 - -
Cmo11g00142 1615 MobiDBLite consensus disorder prediction 964 998 - -
Cmo11g00142 1615 MobiDBLite consensus disorder prediction 28 50 - -
Cmo11g00142 1615 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1282 1614 IPR028889 -
Cmo11g00142 1615 Pfam Protein of unknown function (DUF629) 341 874 IPR006865 -
Cmo11g00142 1615 MobiDBLite consensus disorder prediction 1193 1215 - -
Cmo11g00142 1615 MobiDBLite consensus disorder prediction 1139 1177 - -
Cmo11g00142 1615 MobiDBLite consensus disorder prediction 1193 1208 - -
Cmo11g00142 1615 CDD Peptidase_C19 1374 1612 - -
Cmo11g00142 1615 Pfam Ubiquitin carboxyl-terminal hydrolase 1283 1591 IPR001394 GO:0004843|GO:0016579
Cmo11g00142 1615 ProSitePatterns Zinc finger C2H2 type domain signature. 398 419 IPR013087 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo10g00186 Cmo11g00142 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00186 Cmo-Chr10:843391 Cmo11g00142 Cmo-Chr11:711512 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00142 - - mcha:111007268 2721.42