Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00149 ATGGAGGCTCAACCTTTGCCAACCACAGCTGATGCAGTTCAATCAGCTGGAGAAGATGAAGAACATGCTCCCAAACATAAGGTTCCTTTAATGGCTGAGTTGGAGAAGCCTTCCATGGAGCCCCTCTCACTCGCATCTGCCTCTTCAACTTGGAAGGAAGAGGATCATGAGCATGAACAAAGGCTAAAAATGGCGAAAGGTGAAATGAGGGAAGTGAAGGAAGAAAACCAGCGGCTAAAAAGGTGTTTAGATCAAATGATGAGGGATTACGAGAGCCTCAAAAGGCAATTCCATGATATGAGTACCATAAACAACGAGGCAGCTGAAGAAGTTGAGGACATGGTTTCACTGACATTGGGAAGATCCTCAAGCGACCAAAACAAGAACACTTGCCCTGAAACAAAGCCAGATCTTCAAAACATTCAAAGTCCGGCCGACAGTGAACAAGGCAAGGAGGAAGATGCCGGACAGACTTGGCCGCCGGGTAAAGTCTTGAAGGGGTTGGCTGCGCCGGCGGCCGGAGAGGATGAAGTTTCTCAGCAGAATCCTCCGAAGAAGACGAGGGTTTGTGTGCGGGCTCGGTGTGATACGCCAACGGTGCAAAGGAGTGTTGATGATATTTCAATACTAATCACCACCTATGAAGGAACTCACAACCACCCTCTACCTGTGTCAGCCATGGCCATGGCTTCAACCACGTCGGCCGCCGCCTCAATGCTCCTCTCGGGTGCTTCCACCTCGACCTCTCGGCCGGGACTAAACCCTTCACCGATCGGGACAGCGTCTGCAAATCTCCATGGAATGAACATGTACACCAATTCAAAGCAATTCTACTTGTCAAACTCTTCAATGCTATCTTCTTCTCTAAACCATCCCACAATCACCTTAGACCTCACTTCAAATCCTCCCTCAGCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCTCTCCTTTCCACAAAATCCCTTCAACTTATCCCCCAAAATATCCCTTCACCAGCCTTGATTTTGGGTCTTGGAATACTAATATCAACAAAAATGTATTAGGAATGTCATCAGATCTTGCTAAGCAATTCCCTCCCCATACTAACATCTACCAAGCTTGCCTTCAACAATTTGCCAAACCTTCAACTCCTCCACCCCCGCCTCTACCGGACACGATAGCAGCAGCAACCAAGGCAATTACGTCCGACCCGAGTTTCCAATCAGCATTGGCGGCTGCCCTGAGCTCGATCATCGGCGGCGGAAATGGGGGCGAGGCGGTTCAGGCAATGAGTAGCTATGTCCAAGCAGCACAGGGACAAGGAAGTATGGGGTTTCAGGCAGCTCCATCGTTGACATACTCCACATCCAAGAGTCCTTCATCTCCTGGTGACAGTAGAGACGATGATACCAAGTGA 1398 49.07 MEAQPLPTTADAVQSAGEDEEHAPKHKVPLMAELEKPSMEPLSLASASSTWKEEDHEHEQRLKMAKGEMREVKEENQRLKRCLDQMMRDYESLKRQFHDMSTINNEAAEEVEDMVSLTLGRSSSDQNKNTCPETKPDLQNIQSPADSEQGKEEDAGQTWPPGKVLKGLAAPAAGEDEVSQQNPPKKTRVCVRARCDTPTVQRSVDDISILITTYEGTHNHPLPVSAMAMASTTSAAASMLLSGASTSTSRPGLNPSPIGTASANLHGMNMYTNSKQFYLSNSSMLSSSLNHPTITLDLTSNPPSASSSSSSSSSSSPFHKIPSTYPPKYPFTSLDFGSWNTNINKNVLGMSSDLAKQFPPHTNIYQACLQQFAKPSTPPPPPLPDTIAAATKAITSDPSFQSALAAALSSIIGGGNGGEAVQAMSSYVQAAQGQGSMGFQAAPSLTYSTSKSPSSPGDSRDDDTK 465
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 752417 756064 + CmoCh11G001490.1 Cmo11g00149 390768

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00149 465 MobiDBLite consensus disorder prediction 15 33 - -
Cmo11g00149 465 PANTHER WRKY TRANSCRIPTION FACTOR 61-RELATED 200 455 - -
Cmo11g00149 465 Coils Coil 55 96 - -
Cmo11g00149 465 MobiDBLite consensus disorder prediction 440 455 - -
Cmo11g00149 465 MobiDBLite consensus disorder prediction 120 146 - -
Cmo11g00149 465 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 43 200 IPR044810 GO:0003700
Cmo11g00149 465 MobiDBLite consensus disorder prediction 296 319 - -
Cmo11g00149 465 SUPERFAMILY WRKY DNA-binding domain 175 223 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo11g00149 465 MobiDBLite consensus disorder prediction 440 465 - -
Cmo11g00149 465 MobiDBLite consensus disorder prediction 50 76 - -
Cmo11g00149 465 PANTHER WRKY TRANSCRIPTION FACTOR 61-RELATED 43 200 - -
Cmo11g00149 465 ProSiteProfiles WRKY domain profile. 174 223 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo11g00149 465 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 200 455 IPR044810 GO:0003700
Cmo11g00149 465 MobiDBLite consensus disorder prediction 1 76 - -
Cmo11g00149 465 Gene3D WRKY domain 172 224 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo11g00149 465 MobiDBLite consensus disorder prediction 120 165 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00149 - - - cmax:111471155 789.26
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo10g00198 Cmo11g00149 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00149 Cmo-Chr11:752417 Cmo19g00938 Cmo-Chr19:8631530 1.56E-20 dispersed
Cmo10g00198 Cmo-Chr10:885235 Cmo11g00149 Cmo-Chr11:752417 1.16E-91 wgd
Cmo11g00149 Cmo-Chr11:752417 Cmo13g00963 Cmo-Chr13:8331688 5.91E-58 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g518 . . Bda06g00552 Bda15g00578 Bpe12g00555 Bpe13g00280 . . . . Cma10g00180 Cma11g00161 Car10g00169 Car11g00139 Sed08g0199 Cpe20g00199 Cpe04g01513 Bhi02g00342 Tan09g2157 Cmetu02g0550 . Hepe09g0135 . . Cla06g01605 Cam06g1779 Cec06g1830 Cco06g1839 Clacu06g1741 Cmu06g1686 Cre06g2502 . . . Cone19ag0085 Lsi02g00307 Csa01g00787 Chy12g01329 Cme12g01756 . . Bda11g01690 Bda14g00841 Bpe07g00791 . Bma03g00818 . Sed08g2579 Cmo10g00198 Cmo11g00149 Cma13g00932 . Car13g00772 . . Cpe18g00805 Bhi08g01407 Tan05g2089 Cmetu12g0663 Lac10g0367 . . . Cla01g01429 Cam01g1496 Cec01g1536 Cco01g1582 Clacu01g1520 Cmu01g1412 Cre01g1330 Lsi06g01483 Csa01g00218 Chy02g02515 Cme02g01901
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001916 3 3 2 0 2 2 3 2 2 2 2 2 3 2 2 2 2 1 3 2 2 2 1 2 2 2 2 5 3 4 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g00149 Cmo_Chr11 FPKM 15.104214 17.999027 26.711987 28.377846 16.805502 18.841608 16.254623 13.414268 9.800689 10.760935