Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00151 ATGGCGGATCATTCTGTTGGTCCCGCCAGTTTCTGGACTCAAGCCAATTCTCTGCTCAGGAAGAACTTGACTTATCAGAAACGCAATATGATGACGAACGTTCGCCTCATTTTGTTCCCATTTCTCCTGTGTTTGTTACTTGTACTCCTTCAATCATTGATCAACAATGAATTGGACAAGCCCAAATACAGATGTGGTTGTACATGTATTGATACTAATGCAGATGGTACCTGTGAAGAAGTCTGTGGAGTTCAATATTCAACTTTGGAACAAGCTGCCAGTTGCCCAATTGAAAGCCCACCCGAATGGCCTCCTTTGTTGCAAATGCCAGCTCCCGAGTTTCGTGCTGTTAGAGCCAGTTTTAATCCATTTATGGACTTACCGGACGAGTCGTGCAGGCGAACGGGGACGTGTCCTGCAACTGTACTTTTCACTGGAACTAATCAATCTCTTGGAGAAATTTTGGTTGGAAGCATGGTCACAAATTCATTCATTCTCAATTCCAACAATGTTTCAGGTAGTTTAGCTTTCAATGTGGTGTACTTCTATCTTGAACTGCTCAACCTTGTAGCTTTTATAAATGCCCAGGGCTCAAGCACGATGATTAAGGATAACAACTTTCTGGAGCCAGCTTTTGCTTCAAACCTTCCTTTGTATAATGTGCAACTTCAGTGCACAGGAAACTCTTCTCTGACTGTTTCTGTTCCTGTTATGTCTGTTGAAAAGCCTAAAGAGGTTATATGTGTTCAAGGCTTACACTTGTGGCGCAACAGTGCTTCTGAGGTCAACGATGAGATGTATAAAGGATTTCATAAGGGAAATTCAGAGGGGAAAGTTAATGAAATCCTTGCAGGTTTTGATTTCTTAAACTCAAATGCAAATAGCTTTAATGTTAGCGTTTGGTATAATTCAAGTATCAGAAACGAATCTGGATATTTTCCTCCGACATTACTGCGTGTTCCACGCTCAGTGAATCTAGCAACCAATGGCTACCTTAAAAATTTGGTCGGACCAGGAACAGAAATTCCTTTTGAGTTCGTGAAAGAAATGCCAAAGGCGGGATCCAAGCTCAGGCTCGATCTATCCTCTTTGCTTGGCACTCTTTTCTTTACTTGGGTCGTTCTGCAGCTTTTCCCTGTTGTATTGACATCATTGGTTTACGAGAAGCAACAGAAGCTGAGAATCATGATGAAAATGCATGGCCTTGGCGACGGGCCTTATTGGTTGATCTCTTATGCATATTTCCTTACAATATCTGCCATTTACATGCTATGTTTTGTGATATTTGGCTCAGTTATAGGTCTAAAATTTTTCACATTGAACGACTACAGCATCCAAGTTGTGTTTTATTTCCTCTATATAAACTTGCAAATTTCTTTGGCTTTCTTAACTGCAGCATGGTTCACAAATGTAAAGACTGCTGCAGTCATAGCTTACATACTCGTATTCGGATCGGGGCTCTTAGGCGGCTTCCTTTTTCATTTTTTTCTTGAAGACCCATCATTTCCAAATGCCTGGATTATAGTATTGGAGTTATACCCTGGCTTTGCTCTGTATCGTGGATTATACGAGTTTGCACAGTATTCCTTCATTGGAAACTTTATGGGGAGTGATGGAATGCGTTGGGGGAAGTTGAGCGACGAACTTAACGGGATGCAAGATGTGATGATTATCATGGTTGTAGAGTGGTTGTTGGTATTGTTGGTTGCATATTATGTAGATCAAATTTCATCCTCTGGTGGTGGGAAAAGTCCTCTATTTTTCTTGAGAAGGTTTCGGAAAAAAGCCGCTGCATCGTTTCGGTTGCCAAGTTTGCGAAAGCAAGGCTCTAAAGCCTTTAGGGAGAAGGTTGAACAGTTAATACTAGAACCAGATACGAGTCATGCCATTGTGTGTGACAATCTCAAAAAGGTCTATCCAGGAAGAGATGGAAATCCTGAGAAGTTTGCTGTAAAAGGTTTGTCTCTTGCTGTTCCTCGAGGGGAGTGTTTCGGCATGCTCGGTCCAAATGGTGCAGGGAAAACCTCATTTATCAGTATGATGATTGGCCTCACAAAGCCGAGTGCTGGCACGGCGTTTGTCCAAGGTCTGGATATATGGAACGATATGGATATGATATATACTAACATGGGTGTATGTCCACAGCATGACCTGCTATGGGAACAACTCACAGGAAGAGAGCATCTACTCTTCTATGGTAGACTTAAGAATCTACGAGGCTCCGCACTAACTGAAGCAGTGGAAGAGTCTTTGAAGGGTGTCAATCTGTATCATGGAGGAGTTGCAGATAAACAAGCTGGGAAGTACAGTGGGGGAATGAAGAGGAGGCTTAGTGTTGCTATTTCACTAATTGGAGACCCCAAAGTCGTTTACATGGACGAGCCAAGCACTGGGCTTGATCCAGCTTCAAGAAACAGTTTATGGAATGTCGTGAAGCGCGCAAAGCGAGATCGAGCCATAATTCTGACCACACATTCCATGGAGGAGGCAGAAGTCCTCTGCGATCGATTAGGAATCTTTGTCGACGGTGGCTTGCAGTGCATAGGAAATCCTAAAGAGAATTATGCCCCAAAGCTTCAAAATCCTCAAACCAATCTGATTAGCTTTACATTTTCTGACATGACTGTTGACATGTACTTGGATTGTCTTTTACAGCTCAAAGGTAGATATGGAGGATCTTATATATTCACAATGACTGTATCTGCAAATCACGACGTCGATGTCGAGAATATGGTGAAGCATCTGTCTCCCAGTGCTAGTAAGATCTACCACATCTCTGGAACTCAGAAATATGAACTGCCCAAACACGAGGTCCGAATTGCTGACGTGTTTCAAGCTGTGGAAAATGCAAAGAGTAGGTTCACAGTCTTTGCTTGGGGTCTGGCTGACACAACATTAGAGGATGTGTTTATTAAGGTTGCACGAGGAGCACAGTCGTTCAATGTTCTTTCATGA 2955 42.57 MADHSVGPASFWTQANSLLRKNLTYQKRNMMTNVRLILFPFLLCLLLVLLQSLINNELDKPKYRCGCTCIDTNADGTCEEVCGVQYSTLEQAASCPIESPPEWPPLLQMPAPEFRAVRASFNPFMDLPDESCRRTGTCPATVLFTGTNQSLGEILVGSMVTNSFILNSNNVSGSLAFNVVYFYLELLNLVAFINAQGSSTMIKDNNFLEPAFASNLPLYNVQLQCTGNSSLTVSVPVMSVEKPKEVICVQGLHLWRNSASEVNDEMYKGFHKGNSEGKVNEILAGFDFLNSNANSFNVSVWYNSSIRNESGYFPPTLLRVPRSVNLATNGYLKNLVGPGTEIPFEFVKEMPKAGSKLRLDLSSLLGTLFFTWVVLQLFPVVLTSLVYEKQQKLRIMMKMHGLGDGPYWLISYAYFLTISAIYMLCFVIFGSVIGLKFFTLNDYSIQVVFYFLYINLQISLAFLTAAWFTNVKTAAVIAYILVFGSGLLGGFLFHFFLEDPSFPNAWIIVLELYPGFALYRGLYEFAQYSFIGNFMGSDGMRWGKLSDELNGMQDVMIIMVVEWLLVLLVAYYVDQISSSGGGKSPLFFLRRFRKKAAASFRLPSLRKQGSKAFREKVEQLILEPDTSHAIVCDNLKKVYPGRDGNPEKFAVKGLSLAVPRGECFGMLGPNGAGKTSFISMMIGLTKPSAGTAFVQGLDIWNDMDMIYTNMGVCPQHDLLWEQLTGREHLLFYGRLKNLRGSALTEAVEESLKGVNLYHGGVADKQAGKYSGGMKRRLSVAISLIGDPKVVYMDEPSTGLDPASRNSLWNVVKRAKRDRAIILTTHSMEEAEVLCDRLGIFVDGGLQCIGNPKENYAPKLQNPQTNLISFTFSDMTVDMYLDCLLQLKGRYGGSYIFTMTVSANHDVDVENMVKHLSPSASKIYHISGTQKYELPKHEVRIADVFQAVENAKSRFTVFAWGLADTTLEDVFIKVARGAQSFNVLS 984
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 761966 767952 + CmoCh11G001510.1 Cmo11g00151 390770

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00151 984 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 630 867 IPR003439 GO:0005524
Cmo11g00151 984 CDD ABC_subfamily_A 634 853 - -
Cmo11g00151 984 Pfam ABC-2 family transporter protein 37 571 - -
Cmo11g00151 984 Pfam ABC transporter 652 796 IPR003439 GO:0005524
Cmo11g00151 984 SMART AAA_5 660 844 IPR003593 -
Cmo11g00151 984 Gene3D - 621 862 IPR027417 -
Cmo11g00151 984 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 629 855 IPR027417 -
Cmo11g00151 984 PANTHER OS08G0398300 PROTEIN 8 982 - -
Cmo11g00151 984 ProSitePatterns ABC transporters family signature. 769 783 IPR017871 GO:0005524
Cmo11g00151 984 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 8 982 IPR026082 GO:0016021|GO:0055085|GO:0140359
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00151 - - - cpep:111794060 1751.49
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00057 Cmo-Chr3:920300 Cmo11g00151 Cmo-Chr11:761966 2.34E-55 dispersed
Cmo11g00151 Cmo-Chr11:761966 Cmo11g00154 Cmo-Chr11:776211 2.67E-08 dispersed
Cmo11g00151 Cmo-Chr11:761966 Cmo11g00153 Cmo-Chr11:768840 4.73E-62 proximal
Cmo11g00151 Cmo-Chr11:761966 Cmo13g00964 Cmo-Chr13:8344249 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g522 Blo04g00762 Blo16g00192 . . . Bpe13g00281 Bma06g00182 . . . . Cma11g00159 . . Sed14g0146 . Cpe04g01511 Bhi02g00339 Tan09g2144 Cmetu08g1425 . Hepe09g0133 . . Cla06g01603 Cam06g1777 Cec06g1828 Cco06g1836 Clacu06g1739 Cmu06g1684 Cre06g2500 . . Cone13ag0083 . Lsi02g00306 . Chy12g01330 . . . Bda11g01692 Bda14g00842 . Bpe15g00611 Bma03g00819 . . . Cmo11g00151 . . . . . . Bhi08g01403 . . . Hepe07g2288 . . . . . . . . . Lsi06g01481 Csa01g00220 Chy02g02513 Cme02g01899
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001221 4 5 2 3 3 2 0 2 2 2 2 2 3 2 2 3 2 1 3 2 2 2 3 2 2 2 2 3 8 2 75
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g00151 Cmo_Chr11 FPKM 21.799057 21.443054 32.354195 32.835091 28.255365 27.883673 27.731508 28.929865 30.597843 28.975328