Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00153 ATGGAATTAAGAAGCGGATTTCCGCTTCTTCTTCAGCAATACCAGGCGCTGTTCAAGAAGAATCTCTTGCTTTCATGGCGGAGCAAGAGGGCTACTTTTCTCCAGCTATTTTCCTCTCTCTTTTTCATATTCCTCATTTTTTGTATTCAGAAAGCTATTGAGGCTCGCTTTAGCTCTTCAACTGCCTTGAACGATGTTCGCAATCCGGAACTTCTGGCTAACCCTCCGATTCCGCCTTGCGAGGATAAGTACTACATAAAGCTTCCTTGTTATGATTTCGTGTTTAGCGGCAGCTCCAGCGCCAAGGTTCGCAGCATTGTCGGCGCTATTATGGCCAATAATCCCGGCCGACCGATTCCTCCGGATAAGGTACGATCATTTGGTACACCTGCTGAAGTAGATCGATGGCTTTTAAACAACCCTATGACTTGCCCTGGTGCCTTGCATTTCACTGAAAGAAATGGAACTGTGATTAGTTATGGTATACAAACTAATTCTACCGCTGTGGCAAGGAGAGGACACTACGAAGACCCCACGTTTAAATTTCAAATTCCACTCCAGATAGCTGCAGAGCGTGAAATTGCTCGATCTTTGATTGGGGTTCCCAACTTTAGCTGGGTTATCAACTTCATGGAATTTGCACACCCTCCAGTGGACAATTTCTCTGCAGTGAATACTGTTGGACCAACATTTTTCCTAGCCATTGCTATGTTTGGCTTTGTACTTCAAATTAGTTCCTTGATCACAGAAAAAGAGCTCAAACTTCGCCAGGCAATGACAATGATGGGTCTGTATGATACTGCATATTGGCTGTCGTGGCTTACATGGGAAGGAATTACCACGCTCATTGCATCTCTTTTAACTGTTCTGTTTGGAATGATGTTTCAGTTTGATTTTTTCTCTAAAAACAACTTTGCGATCGTGTTTCTCGTCTTTTTCCTCTTCCAACTCAATATGGTTGGATTTGCTTTTATGCTATCGGCCTTTATAAGCAAGTCGTCTTCATCCACTACTGTTGGCTTCTCCATCTTTATTGTAATGATGCGTTTGCGTAAGCTCTATCTTGTCACAGCATTTGGATTTCCTTATTCAAACGACTTCTCAAAATTTTTTCAAGTCATCTGGTCCTTGTTCCCGCCTAACCTTCTTGCAAAAGCTCTTTCTCTGCTCTCTGATGCCACTTCCACCCCCGGAGATTCAGGAATCAGCTGGAGTAGACGCACAGAGTGTGCCCCAAATGATACCGAGTGTGTCATAACTATAAATGATATTTATTTATGGCTTGTGGGAACATTCTTCTTATGGGTTTTCTTGGCCATCTACCTCGACAACATCATCCCAAATGCCGCTGGTGTGAGAAAGTCAGATATTGGACAGGGAAAGGAGGAAGTAAAGTTGAAGGTATTCAAATTTGGAAACTACATGTTTTCTACTCATGTCTTTCTCCTGGAGTTCAAACTGATCCTAACTAGGAAATCTGTTTCCTTTTGGGTAGAGGGTGGCATCTGCAGTTGCTTTGGTTCACTTCCAACATTGGAACCGATAACTCCAGATGATGAAGATGTCCTTGAAGAGGAAAACACAGTGAAACGACAACTTTCAGAAGGAATAGTGGATTCAAATGTTGCGGTTCAAATACGTGGCCTTGCAAAGACATATCCTGGAGCTTGGAAGGGCAACTCATTTTGCTGCTGTAAATGCAAGAAAACTCCTCCTTACCATGCTGTCAGGGGCTTATGGGTGAACTTTGCTAAGGATCAACTATTTTGTCTTCTTGGACCAAATGGTGCTGGGAAAACCACAGCAATCAATTGTTTGACTGGGATTACACCGGTGACTGGTGGAGATGCATCAATATATGGATATTCTGTTCGTGACTCTGTTGGCATGGCAAACATTCGGAGAATTATTGGTGTACATCTTACAGAACTTCTTGATGCTTTCCTACAAGTCCGGTCTCTGAACAAATTCATGTTTTTTGATATACTGTGGGATGTCTTGTCTGGGCAAGAACACCTCCATCTTTTTGCTACAATAAAAGGCCTTCCACCATCTTCTATAAAATCGATTGCTGAGAAGTCGTTGGAAGAAGTAAGACTCACTCAGTCTGCAAAGACAAGAGCTGGTAGTTACAGTGGGGGAATGAAACGTCGATTAAGTGTTGCCATAGCTCTTATTGGTGATCCGAAGTTAGTCATCTTAGATGAACCGACAACTGGAATGGATCCAATAACAAGGAGGCACGTATGGGATATCATTGAGGGTGCAAAGAGAGGACGTGCCATTCTTTTGACAACACATTCTATGGAAGAGGCTGACATCTTAAGTGACCGCATTGGAATCATGGCAAAGGGAAGGCTCCGTTGCATTGGAACCTCAATCAGGTTGAAGTCGAGATTTGGTGCTGGCTTTGTCGCGAATGTTAGTTTTGCCAATGGCAACGGCGGACAGACTCCTAATGGTAATGGGGTATTGACTACCCCAACTGGCCATGAAGAAATTAAGCACTTCTTCAAATCGCGCTTGGACATTCTACCCAAGGAAGAGCACAAATCTTTTCTAACTTACATCATTCCTCATGACAGAGAAAAGCTTCTGACGAGGTTCTTTGATGAACTTGAAGAGAGAAAGGGAGAGCTTGGAATATCTGATATCCAACTCAGTCTTACCACCCTTGAAGAAGTATTCTTGAACATTGCAAAACAAGCAGAGTTGGAAAGTGCTGCAGCTGATGGAACTATGGTGTCTCTGACTCTAACAACATCTGGCCACACTGTTGAGATACCAGTAGGATCAAGATTTGTGGGAATTCCAGGGACAGAGACAGCAGAGAACCCAAGCGGGATAATGGTAGAAGTTTACTGGGAACAAGATGATTCAGGTTCCCTCTGCATATCCGGTCACTCCGAAGAAATGCCAGTGCCCCCTAACGTACAGCCGTTAGCTTCCCTAAGATCCCTCTCTTTGAGATCAGCTTCACAGAGACGTCGTTTTGGAGAGAGAGGCCCAGTCCATGGCATTGTTTATGACCCTGAACAAGCAGCTGCTTATAATTCTCGTTGA 3063 43.62 MELRSGFPLLLQQYQALFKKNLLLSWRSKRATFLQLFSSLFFIFLIFCIQKAIEARFSSSTALNDVRNPELLANPPIPPCEDKYYIKLPCYDFVFSGSSSAKVRSIVGAIMANNPGRPIPPDKVRSFGTPAEVDRWLLNNPMTCPGALHFTERNGTVISYGIQTNSTAVARRGHYEDPTFKFQIPLQIAAEREIARSLIGVPNFSWVINFMEFAHPPVDNFSAVNTVGPTFFLAIAMFGFVLQISSLITEKELKLRQAMTMMGLYDTAYWLSWLTWEGITTLIASLLTVLFGMMFQFDFFSKNNFAIVFLVFFLFQLNMVGFAFMLSAFISKSSSSTTVGFSIFIVMMRLRKLYLVTAFGFPYSNDFSKFFQVIWSLFPPNLLAKALSLLSDATSTPGDSGISWSRRTECAPNDTECVITINDIYLWLVGTFFLWVFLAIYLDNIIPNAAGVRKSDIGQGKEEVKLKVFKFGNYMFSTHVFLLEFKLILTRKSVSFWVEGGICSCFGSLPTLEPITPDDEDVLEEENTVKRQLSEGIVDSNVAVQIRGLAKTYPGAWKGNSFCCCKCKKTPPYHAVRGLWVNFAKDQLFCLLGPNGAGKTTAINCLTGITPVTGGDASIYGYSVRDSVGMANIRRIIGVHLTELLDAFLQVRSLNKFMFFDILWDVLSGQEHLHLFATIKGLPPSSIKSIAEKSLEEVRLTQSAKTRAGSYSGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIEGAKRGRAILLTTHSMEEADILSDRIGIMAKGRLRCIGTSIRLKSRFGAGFVANVSFANGNGGQTPNGNGVLTTPTGHEEIKHFFKSRLDILPKEEHKSFLTYIIPHDREKLLTRFFDELEERKGELGISDIQLSLTTLEEVFLNIAKQAELESAAADGTMVSLTLTTSGHTVEIPVGSRFVGIPGTETAENPSGIMVEVYWEQDDSGSLCISGHSEEMPVPPNVQPLASLRSLSLRSASQRRRFGERGPVHGIVYDPEQAAAYNSR 1020
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 768840 773972 - CmoCh11G001530.1 Cmo11g00153 390772

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00153 1020 CDD ABC_subfamily_A 544 797 - -
Cmo11g00153 1020 Pfam ABC transporter 581 738 IPR003439 GO:0005524
Cmo11g00153 1020 ProSitePatterns ABC transporters family signature. 711 725 IPR017871 GO:0005524
Cmo11g00153 1020 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 568 805 IPR027417 -
Cmo11g00153 1020 PANTHER ABC TRANSPORTER A FAMILY MEMBER 1-RELATED 7 981 - -
Cmo11g00153 1020 Pfam ABC-2 family transporter protein 194 438 - -
Cmo11g00153 1020 Gene3D - 535 808 IPR027417 -
Cmo11g00153 1020 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 544 809 IPR003439 GO:0005524
Cmo11g00153 1020 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 7 981 IPR026082 GO:0016021|GO:0055085|GO:0140359
Cmo11g00153 1020 SMART AAA_5 585 786 IPR003593 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00153 - - - mcha:111007040 1689.47
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo11g00153 Cmo13g00964 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00153 Cmo-Chr11:768840 Cmo13g00964 Cmo-Chr13:8344249 1.74E-73 dispersed
Cmo11g00151 Cmo-Chr11:761966 Cmo11g00153 Cmo-Chr11:768840 4.73E-62 proximal
Cmo11g00153 Cmo-Chr11:768840 Cmo11g00154 Cmo-Chr11:776211 9.03E-62 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g523 . Blo16g00190 . . . Bpe13g00282 Bma06g00181 . Cmo13g00964 . . Cma11g00155 . . Sed08g0202 . Cpe04g01510 Bhi02g00338 Tan09g2142 Cmetu02g1068 . Hepe09g0132 . . Cla06g01602 Cam06g1776 Cec06g1827 Cco06g1835 Clacu06g1738 Cmu06g1683 Cre06g2499 . . Cone13ag0082 . . Csa01g00785 . Cme12g01759 . . Bda11g01693 . . Bpe15g00610 Bma03g00820 . . . Cmo11g00153 Cma13g00934 . . . . . Bhi08g01401 . . Lac10g0365 Hepe07g2289 . . . . . . . . . Lsi06g01480 Csa01g00221 Chy02g02512 Cme02g01898
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004576 2 1 3 2 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 8 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g00153 Cmo_Chr11 FPKM 27.509895 25.835773 59.022186 53.107491 37.981297 39.247883 33.92778 62.240685 59.727573 53.305817