Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo11g00159 | ATGGAGGGGGGTGATGACCTCCACCGCTACCACCACCACCACCACAACCACCACCACCATCACCGCCCTAACTTCCCGTTTCAATTACTCGAAAAGAAAGACGACGACGACGCCACCGCCGCCTCTTGCTCAACTTCCCCTTACCCTTCTCTCGCCATCTCCACCGACCCTACTACAACCGCCGCCGCTGCTGCTGTCGAGCCCTCCAAGAAGCCACCACCGAAAAGAACCTCCACCAAAGACCGCCACACTAAAGTGGATGGCCGTGGGCGGCGCATCCGAATGCCAGCCCTATGTGCGGCGAGGGTATTCCAGCTGACACGCGAACTGGGTCACAAGTCCGACGGAGAAACCATCGAGTGGCTACTCCAACAGGCGGAACCCTCCGTGATCGCCGCCACGGGAACCGGAACAATCCCGGCGAACTTCACATCCCTCAACATCTCATTACGTAGCTCTGGCTCCACCATGTCCGTCCCTTCACAGCTCCGTTCATCGTCCTATTACAATCCAAATTTCTCCCTCCACCCACCACGCCGCACCCTTTTCCCCGGATTTGGCCTCTCATCGGAAACTTCCTCCACCGCCCTCCTCAATTTCCAGTCCACTAACACCGGCAACTCTCTACTCCAAGCCAAACCCGAACTCCGAGACACCACCACTTCATTAGACCTCTCCGACGCGGTGGAGGACATCAGCATAGGACGGAAGAGACGGCCATCGTCGGAGCAGGAGTTCAGTACAGGCGCGATTCCGGCGAGCGGAGGTCAGGTACCGGCGAATTTATGGATGCTTGCGAATACAAATAACCAAGGGATGGGGGTTGACCCCATATGGACTTTTCCGTCGGTGAATAACAGCGGTTTGTATAGAGGGACGATGTCAAGTGGGTTGCATTTCATGAACTTTCCGGGTCCGGTCACGTTGGTTCCGGGTCAGCAACTCGGGTCGAGCGCCAGCGGTGGGAGTAATAGTTCTAGTGAGGCCCACTTCAATATACTTGCTGGCCTGAATCCTTATCGGTCGCTGTCAAGCAGCGGCGTAATGGAAGCGCAGGGAAGTGGATCGCAGTCTCATCACGGCGGCGGCGGAGATGACCGGCACGACACAACCAGTCACCACTCGTAA | 1128 | 57.18 | MEGGDDLHRYHHHHHNHHHHHRPNFPFQLLEKKDDDDATAASCSTSPYPSLAISTDPTTTAAAAAVEPSKKPPPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANFTSLNISLRSSGSTMSVPSQLRSSSYYNPNFSLHPPRRTLFPGFGLSSETSSTALLNFQSTNTGNSLLQAKPELRDTTTSLDLSDAVEDISIGRKRRPSSEQEFSTGAIPASGGQVPANLWMLANTNNQGMGVDPIWTFPSVNNSGLYRGTMSSGLHFMNFPGPVTLVPGQQLGSSASGGSNSSSEAHFNILAGLNPYRSLSSSGVMEAQGSGSQSHHGGGGDDRHDTTSHHS | 375 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 799344 | 800471 | - | CmoCh11G001590.1 | Cmo11g00159 | 390778 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo11g00159 | 375 | PANTHER | TRANSCRIPTION FACTOR TCP14-LIKE | 16 | 374 | - | - | |
| Cmo11g00159 | 375 | PANTHER | TRANSCRIPTION FACTOR TCP4-RELATED | 16 | 374 | IPR005333 | GO:0003700 | |
| Cmo11g00159 | 375 | MobiDBLite | consensus disorder prediction | 36 | 90 | - | - | |
| Cmo11g00159 | 375 | MobiDBLite | consensus disorder prediction | 40 | 62 | - | - | |
| Cmo11g00159 | 375 | ProSiteProfiles | TCP domain profile. | 79 | 133 | IPR017887 | - | |
| Cmo11g00159 | 375 | MobiDBLite | consensus disorder prediction | 361 | 375 | - | - | |
| Cmo11g00159 | 375 | Pfam | TCP family transcription factor | 77 | 245 | IPR017887 | - | |
| Cmo11g00159 | 375 | MobiDBLite | consensus disorder prediction | 73 | 90 | - | - | |
| Cmo11g00159 | 375 | MobiDBLite | consensus disorder prediction | 344 | 359 | - | - | |
| Cmo11g00159 | 375 | MobiDBLite | consensus disorder prediction | 344 | 375 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cmo11g00159 | Cmo13g01176 | CCT | |
| Cmo11g00159 | Cmo13g01176 | ECH | |
| Cmo10g00203 | Cmo11g00159 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo08g00907 | Cmo-Chr8:5906079 | Cmo11g00159 | Cmo-Chr11:799344 | 4.06E-38 | dispersed | |
| Cmo11g00159 | Cmo-Chr11:799344 | Cmo18g00812 | Cmo-Chr18:9545980 | 5.89E-40 | dispersed | |
| Cmo17g00006 | Cmo-Chr17:41969 | Cmo11g00159 | Cmo-Chr11:799344 | 2.27E-37 | dispersed | |
| Cmo17g01372 | Cmo-Chr17:10656012 | Cmo11g00159 | Cmo-Chr11:799344 | 4.65E-37 | dispersed | |
| Cmo10g00203 | Cmo-Chr10:910288 | Cmo11g00159 | Cmo-Chr11:799344 | 0 | wgd | |
| Cmo11g00159 | Cmo-Chr11:799344 | Cmo13g01176 | Cmo-Chr13:9377630 | 2.04E-78 | wgd | |
| Cmo11g00159 | Cmo-Chr11:799344 | Cmo18g01183 | Cmo-Chr18:11881839 | 3.83E-81 | wgd | |
| Cmo11g00159 | Cmo-Chr11:799344 | Cmo04g01729 | Cmo-Chr4:8756861 | 3.13E-82 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 10519 | PF03634 | TCP | 2.00E-38 | No_clan | Cmo | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo11g00159 | - | - | cmax:111471252 | 611.683 |