Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00166 ATGGACCCTTTTCCTTTGTCATGCCATCTTTCCCCTCTCCATTTCAGGAACTGCAATTTTGGGTTTCAAGACAGCATTTTTGACGTTGTTCCATTGTTTGAGACATGCCCAAATGACTCCTTTTTGGTTCTAAAGGATATTGAACCCAATAACACCATTATATCAGAAGATGGTGGAGAAAATGAAAAGAAGGGATTAGAGAGGAAAGAAGGGAGGGGCAAAAGGAAGTGGCGCGGAGAAAGGAGCAGCAGCCCATCAAAAGGTTTGTCAAGAAAGACAATATCTGAGTACTTCTGGATGCCCATAAGTCAGGCCGCTAAGGAATTGAATGTGGGGCTCACTCTGTTGAAGAAGAGGTGTAGAGAATTGGGCATAAGGAGATGGCCTCATAGGAAGCTGATGAGCCTCCAAACGCTAATCAGGAATGTGAAGGAGCTTGAGAAGGAAGATGGAGTGAAGCTAAGGCATGTATTGGAGATATTAGAGAATGAGAAGAAGTTAATGGAAGAGAGGCCAGATTTACAGTTGGAGGACAACACGAAGAGGCTTAGACAAGCCTGCTTCAAGGCCAACTACAAGAAAAAAAGGCTGTCCGGAACAAACAACTCCTCAGCCACCAGGGTTCATCAGGATGATGATGAAGAAGAAGAAGATGAAGAAATGAAGTATCTGTTGGCGGATTGCTCATTTTCATTCACTGGTGGCAGCCTGTTGCTGTACTAA 723 44.12 MDPFPLSCHLSPLHFRNCNFGFQDSIFDVVPLFETCPNDSFLVLKDIEPNNTIISEDGGENEKKGLERKEGRGKRKWRGERSSSPSKGLSRKTISEYFWMPISQAAKELNVGLTLLKKRCRELGIRRWPHRKLMSLQTLIRNVKELEKEDGVKLRHVLEILENEKKLMEERPDLQLEDNTKRLRQACFKANYKKKRLSGTNNSSATRVHQDDDEEEEDEEMKYLLADCSFSFTGGSLLLY 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 818859 819737 + CmoCh11G001660.1 Cmo11g00166 390785

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00166 240 MobiDBLite consensus disorder prediction 57 82 - -
Cmo11g00166 240 MobiDBLite consensus disorder prediction 53 89 - -
Cmo11g00166 240 Pfam RWP-RK domain 89 136 IPR003035 -
Cmo11g00166 240 PANTHER PROTEIN RKD1-RELATED 20 211 - -
Cmo11g00166 240 ProSiteProfiles RWP-RK domain profile. 69 156 IPR003035 -
Cmo11g00166 240 MobiDBLite consensus disorder prediction 197 216 - -
Cmo11g00166 240 PANTHER PROTEIN RKD4 20 211 IPR044607 GO:0003700
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00166 - - - cmax:111471365 417.157
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo10g00208 Cmo11g00166 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00166 Cmo-Chr11:818859 Cmo18g01356 Cmo-Chr18:12775025 8.50E-33 dispersed
Cmo11g00166 Cmo-Chr11:818859 Cmo10g00207 Cmo-Chr10:926403 6.76E-81 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g557 . . . Bda15g00603 Bpe12g00547 . . . . . Cma10g00191 Cma11g00143 Car10g00182 Car11g00151 . . . Bhi02g00318 . . . . . . Cla06g01591 . . . . . . Cone2ag0843 . . . . . . . Blo13g00009 . . . . . . Bma08g00221 . Cmo10g00208 Cmo11g00166 . . . . . Cpe18g00794 . . . . . . . . . . . . . . Lsi06g01463 Csa01g00234 Chy02g02498 Cme02g01884
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo11g00166 CST 74 199 AtRKD Transcription Factor Family AT1G18790 69.7 4.6e-39 159.1
Cmo10g00207 CST 327 458 AtRKD Transcription Factor Family AT1G18790 64.9 3.9e-38 156.0
Cmo10g00207 CST 340 509 AtRKD Transcription Factor Family AT1G74480 54.9 1.1e-36 151.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002327 1 2 1 3 2 2 3 2 2 4 1 2 2 4 2 2 2 2 2 2 1 2 2 2 2 1 2 3 2 2 62
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10522 PF02042 RWP-RK 2.40E-20 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g00166 Cmo_Chr11 FPKM 5.076874 5.911312 3.865321 4.299497 13.651974 13.488447 12.913446 7.942754 8.201957 8.497411