Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00167 ATGGCAGCAACTTCCGCAACTATTTTGTCTATTGGAACAAATGCATCACTTAATACTAAACTCAACTCATTTTCCCAGTCAAAGTCTGCTAGCTTAAGGATCAATTCACAAGAGACTTTTAAGAGCTTCTGTGGCCTCAAGGCTGCTTCATCTCTTGGTTGTGAATCAGAGTCGTCTTTCCTAGGGAAACACAGCACTGCCGCTTTATGGCGTCGTCACGCTACCTCATCTCAAAATGTGAACCAGAATGTATACAAAAAACTTCAACCTCAAGCGTCTTACAAGGTTGCTGTTCTTGGCGCTGCTGGAGGGATAGGTCAACCTCTGTCGCTTCTCATCAAGATGTCTCCATTAGTTTCCACCTTGAACCTCTATGATATTGCAAATGTCAAGGGTGTTGCTGCTGATATTAGCCACTGCAACACTCCCTCGAAAGTTCAGGATTTCACAGGACCTTCTGAATTAGGCAATGCCTTGAAAGGTGTAGATGTTGTTGTCATACCTGCTGGGGTTCCAAGAAAGCCCGGTATGACTCGTGATGACCTATTCAATATTAATGCTGGCATAGTTAAGAGTTTGGTTGAGGCTGTTGCTGATAACTGTCCTGATGCCTTCATTCATATCATCAGCAACCCTGTGAACTCCACTGTGCCAATAGCAGCTGAAGTTCTGAAGAAGAAGGGCGTGTATGATCCAAAGAAGCTTTTCGGAGTTACTACATTGGATGTTGTCCGGGCAAACACTTTTGTTGCTGAAAGGAAGAACCTTAAGCTGATTGACGTCGATGTCCCTGTCATCGGGGGACATGCGGGTATAACAATCCTTCCCTTGCTGTCAAAGACAAGACCTTCAGCGAGCTTTACAGACGATGAAATTCAGGAACTAACTGTTAGAATTCAAAATGCGGGAACTGAAGTCGTGGAAGCAAAGGCAGGAGCTGGATCGGCTACCCTTTCAATGGCATACGCTGCAGCAAGATTTGTCGAATCATCTCTTCGTGCTTTGGATGGAGACAGTGATGTATATGAGTGCTCTTTCGTGCAGTCTGATCTAACCGATCTTCCCTTCTTTGCATCGAGGGTTAAGCTCGGGAGGCAAGGAATTGAAGCCTTTGTAAAATCTGAGCTCCAGGGATTGTCTGAGTACGAGCAGAAAGCTCTTGAAGCTCTAAAGACAGAACTGAAAGCAAGCATTGAGAAGGGCATTAGTTTTGCTCATAAGGAAGCTGTGGCTGCTTAA 1239 44.96 MAATSATILSIGTNASLNTKLNSFSQSKSASLRINSQETFKSFCGLKAASSLGCESESSFLGKHSTAALWRRHATSSQNVNQNVYKKLQPQASYKVAVLGAAGGIGQPLSLLIKMSPLVSTLNLYDIANVKGVAADISHCNTPSKVQDFTGPSELGNALKGVDVVVIPAGVPRKPGMTRDDLFNINAGIVKSLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKKKGVYDPKKLFGVTTLDVVRANTFVAERKNLKLIDVDVPVIGGHAGITILPLLSKTRPSASFTDDEIQELTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDSDVYECSFVQSDLTDLPFFASRVKLGRQGIEAFVKSELQGLSEYEQKALEALKTELKASIEKGISFAHKEAVAA 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 820460 821698 - CmoCh11G001670.1 Cmo11g00167 390786

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00167 412 Gene3D - 239 410 IPR015955 GO:0003824|GO:0016616
Cmo11g00167 412 TIGRFAM MDH_euk_gproteo: malate dehydrogenase, NAD-dependent 95 406 IPR010097 GO:0006099|GO:0030060
Cmo11g00167 412 SUPERFAMILY LDH C-terminal domain-like 238 406 IPR015955 GO:0003824|GO:0016616
Cmo11g00167 412 Gene3D - 92 238 - -
Cmo11g00167 412 CDD MDH_glyoxysomal_mitochondrial 94 405 IPR010097 GO:0006099|GO:0030060
Cmo11g00167 412 Pfam lactate/malate dehydrogenase, NAD binding domain 95 237 IPR001236 GO:0016491
Cmo11g00167 412 ProSitePatterns Malate dehydrogenase active site signature. 238 250 IPR001252 GO:0006108|GO:0016615
Cmo11g00167 412 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 239 404 IPR022383 GO:0016616
Cmo11g00167 412 PANTHER MALATE AND LACTATE DEHYDROGENASE 26 412 - -
Cmo11g00167 412 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 83 238 IPR036291 -
Cmo11g00167 412 PANTHER MALATE DEHYDROGENASE, GLYOXYSOMAL 26 412 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00167 K00026 MDH2; malate dehydrogenase [EC:1.1.1.37] - csv:101214377 700.279
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00618 Cmo-Chr7:2782340 Cmo11g00167 Cmo-Chr11:820460 1.55E-145 dispersed
Cmo11g00167 Cmo-Chr11:820460 Cmo16g00450 Cmo-Chr16:2162297 4.65E-145 dispersed
Cmo10g00209 Cmo-Chr10:934166 Cmo11g00167 Cmo-Chr11:820460 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g558 . . Bda06g00544 . Bpe12g00545 . . Bma12g00996 . . Cma10g00192 Cma11g00142 Car10g00183 Car11g00152 . . . Bhi02g00315 Tan09g2120 . . Hepe09g0117 . . Cla06g01590 Cam06g1762 Cec06g1815 Cco06g1821 Clacu06g1725 Cmu06g1669 Cre06g2485 . . . . . . . . Blo13g00007 Blo15g00310 . . Bpe07g00781 . . Bma08g00222 . . Cmo11g00167 . . . . . . . . . . . . . . . . . . . . Lsi06g01462 Csa01g00236 Chy02g02496 Cme02g01883
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003196 1 4 2 3 2 1 2 2 1 4 1 1 1 3 2 1 1 2 0 2 3 1 1 1 0 0 1 4 2 1 50
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g00167 Cmo_Chr11 FPKM 12.745526 13.603154 17.602865 18.70466 10.474735 11.216224 10.414228 22.263851 21.450493 22.156223