Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00172 ATGGCCACCGTCACCACTCAAGCTTCCGCCGCCGTTTTCCGGCCATTCGCCTCCCGATCGAGGTTCCTTACTGGGTCTTTCGGTAAACTCCACCGCGAGCTGTCGGTTAAACCGGTGGCTGCTTCGCCGTCTTCATCGTTCAAGGTTGAAGCCAAGAAGGGAGAGTGGTTGCCTGGTCTGCCATCTCCGGCGTACTTAAATGGCAGTCTTGCCGGCGACAACGGATTCGACCCACTGGGTCTAGCGGAGGACCCAGAGAATTTGAGGTGGTTCGTGCAAGCGGAGCTCGTGAACGGGCGGTGGGCGATGCTGGGTGTGGCCGGAATGCTTCTGCCGGAGGTTTTCACGAAGATCGGAATCATCAACGCGCCTCAATGGTACGACGCCGGAAAAGCAGAGTACTTCGCGTCGTCTTCCACTCTGTTCGTGATCGAGTTCATCCTGTTCCATTACGTCGAAATCCGGAGATGGCAGGACATTAAAAACCCAGGAAGCGTGAACCAAGACCCCATTTTCAAGCAATACAGTTTGCCCCCAAATGAAGTGGGGTACCCTGGTGGCATTTTCAACCCCCTGAACTTCGCTCCCACTCTTGAAGCCAAAGAGAAGGAAATCGCCAATGGTAAGATCTTCAAAAAGAAAACCCAGATTTTATATGTTGATCTTAGAGGCTGTGGCTTACGATGCTGTGAATTGGGGAGGCTCGCAATGTTGGCGTTTTTGGGGTTCATCGTGCAACATAATGTGACCGGAAAGGGGCCATTTGAGAACCTTTTGCAGCACATTTCTGACCCATGGCACAACACCATTGTCCAGACATTCGGTGGCAACTAA 834 52.76 MATVTTQASAAVFRPFASRSRFLTGSFGKLHRELSVKPVAASPSSSFKVEAKKGEWLPGLPSPAYLNGSLAGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTLEAKEKEIANGKIFKKKTQILYVDLRGCGLRCCELGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTFGGN 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 834931 836675 - CmoCh11G001720.1 Cmo11g00172 390791

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00172 277 SUPERFAMILY Chlorophyll a-b binding protein 233 274 - -
Cmo11g00172 277 Gene3D Chlorophyll a/b binding protein domain 63 267 - -
Cmo11g00172 277 Pfam Chlorophyll A-B binding protein 63 208 IPR022796 -
Cmo11g00172 277 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 210 IPR001344 GO:0009765|GO:0016020
Cmo11g00172 277 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 1 210 - -
Cmo11g00172 277 SUPERFAMILY Chlorophyll a-b binding protein 53 209 - -
Cmo11g00172 277 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 233 277 - -
Cmo11g00172 277 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 233 277 IPR001344 GO:0009765|GO:0016020
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00172 K08910 LHCA4; light-harvesting complex I chlorophyll a/b binding protein 4 - csv:101222701 463.766
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo10g00213 Cmo11g00172 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00172 Cmo-Chr11:834931 Cmo11g00756 Cmo-Chr11:3676214 3.32E-55 dispersed
Cmo01g00834 Cmo-Chr1:4452811 Cmo11g00172 Cmo-Chr11:834931 1.75E-154 wgd
Cmo10g00213 Cmo-Chr10:948889 Cmo11g00172 Cmo-Chr11:834931 2.80E-173 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g566 Blo04g00773 . Bda06g00542 Bda15g00608 Bpe12g00541 . . Bma12g00994 . . . Cma11g00139 Car10g00187 Car11g00156 . . Cpe04g01495 . . . . . . . Cla06g01586 Cam06g1755 Cec06g1811 Cco06g1814 Clacu06g1721 Cmu06g1664 Cre06g2478 Cone2ag0840 Cone16ag0175 . . Lsi02g00081 Csa01g00560 Chy12g01533 Cme12g01983 Blo13g00003 Blo15g00312 . . Bpe07g00779 . . Bma08g00227 Sed08g2078 Cmo10g00213 Cmo11g00172 . . . . . Cpe18g00788 Bhi08g01147 Tan05g2431 Cmetu02g0368 Lac10g0087 Hepe07g2501 . . Cla04g01190 Cam04g1247 Cec01g1758 Cco01g1804 Clacu04g1276 Cmu04g1254 Cre01g1547 . Csa01g00241 Chy02g02491 Cme02g01877
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001994 2 2 3 3 2 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 3 2 1 66
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g00172 Cmo_Chr11 FPKM 17.675335 18.946327 20.904291 20.424591 19.568171 18.099281 17.544001 47.465931 50.605923 49.964378