Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00173 ATGGCGTTTCTTGGACCTCTCTTGGTGGGTCTTCTACTCTCTTTGGGATGTCATTCTGTTCGTGCCAACAATGGAGGTTGGATTGATGCCCACGCTACGTTCTACGGTGGGGGCGACGCGGCTGGCACAATGGGAGGAGCTTGTGGCTATGGGAACCTGTACAGCCAAGGGTATGGAACGAACACAGCGGCATTAAGCACAGCCCTGTTCAACAATGGGCTGAGCTGTGGTGCTTGCTTTGAAATCAAGTGCGTAAATGATCCAAAATGGTGTCTTCCAAACTCCATTGTTGTCACTGCCACAAACTTCTGCCCACCAAACAATGCACTCCCCAACAACGCCGGCGGCTGGTGCAATCCTCCCCAGCACCATTTCGACCTCTCCCAGCCCGTCTTCCAGCAAATCGCTCAATTCAAAGCAGGCGTCGTCCCAGTGGCTTACAGAAGGGTGTCTTGTCAGAAGAAAGGAGGCATGAGATTCACAATAAACGGCCATTCGTACTTCAATTTAGTTCTTGTAACGAACGTTGGTGGAGGTGGGGATGTTCATGGGGTATGGATCAAAGGGTCGAAAACAGGGTGGGAAGCAATGTCGAGGAACTGGGGGCAGAACTGGCAGAGCAATTCATATCTGAATGGACAGAGCCTGTCGTTCAAAGTGCTCACCGGAGATGGCCGGACGGTGATATCCAATAACGTAGCACCAGCTGGGTGGAGCTTTGGTCAGACTTATAGTGGGCTTCAGTTCCCATGA 753 51.79 MAFLGPLLVGLLLSLGCHSVRANNGGWIDAHATFYGGGDAAGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCVNDPKWCLPNSIVVTATNFCPPNNALPNNAGGWCNPPQHHFDLSQPVFQQIAQFKAGVVPVAYRRVSCQKKGGMRFTINGHSYFNLVLVTNVGGGGDVHGVWIKGSKTGWEAMSRNWGQNWQSNSYLNGQSLSFKVLTGDGRTVISNNVAPAGWSFGQTYSGLQFP 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 837883 839593 - CmoCh11G001730.1 Cmo11g00173 390792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00173 250 SMART dpbb_1 62 147 IPR007112 -
Cmo11g00173 250 Gene3D - 13 153 IPR036908 -
Cmo11g00173 250 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 157 IPR007112 -
Cmo11g00173 250 Pfam Expansin C-terminal domain 158 235 IPR007117 -
Cmo11g00173 250 SUPERFAMILY Barwin-like endoglucanases 26 175 IPR036908 -
Cmo11g00173 250 PANTHER EXPANSIN 7 249 - -
Cmo11g00173 250 SUPERFAMILY PHL pollen allergen 154 245 IPR036749 -
Cmo11g00173 250 Pfam Lytic transglycolase 62 147 IPR009009 -
Cmo11g00173 250 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 167 246 IPR007117 -
Cmo11g00173 250 PRINTS Expansin signature 57 71 IPR002963 GO:0009664
Cmo11g00173 250 PRINTS Expansin signature 84 95 IPR002963 GO:0009664
Cmo11g00173 250 PRINTS Expansin signature 96 106 IPR002963 GO:0009664
Cmo11g00173 250 PRINTS Expansin signature 115 132 IPR002963 GO:0009664
Cmo11g00173 250 PRINTS Expansin signature 132 145 IPR002963 GO:0009664
Cmo11g00173 250 PRINTS Expansin signature 156 168 IPR002963 GO:0009664
Cmo11g00173 250 PRINTS Expansin signature 168 189 IPR002963 GO:0009664
Cmo11g00173 250 PRINTS Expansin signature 203 224 IPR002963 GO:0009664
Cmo11g00173 250 PRINTS Expansin signature 232 248 IPR002963 GO:0009664
Cmo11g00173 250 PANTHER EXPANSIN-A15 7 249 IPR002963 GO:0009664
Cmo11g00173 250 Gene3D - 157 249 IPR036749 -
Cmo11g00173 250 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Cmo11g00173 250 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576
Cmo11g00173 250 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Cmo11g00173 250 PRINTS Expansin/Lol pI family signature 140 156 IPR007118 GO:0005576
Cmo11g00173 250 PRINTS Expansin/Lol pI family signature 194 208 IPR007118 GO:0005576
Cmo11g00173 250 PRINTS Expansin/Lol pI family signature 232 246 IPR007118 GO:0005576
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo10g00214 Cmo11g00173 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00173 Cmo-Chr11:837883 Cmo15g00178 Cmo-Chr15:811890 2.11E-131 dispersed
Cmo10g00214 Cmo-Chr10:951009 Cmo11g00173 Cmo-Chr11:837883 8.01E-151 wgd
Cmo11g00173 Cmo-Chr11:837883 Cmo18g01159 Cmo-Chr18:11792230 3.19E-129 wgd
Cmo11g00173 Cmo-Chr11:837883 Cmo04g01748 Cmo-Chr4:8826880 9.76E-148 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00173 - K20628 csv:101222936 456.062