Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00182 ATGATGGAATGCAAAGAGATCAATTGCAACAAGGATTGTGGCGTTGGGGAAAGTAATAGGGGCGGTGGAGGAGCTGGATTTGTTGATAGGAGTAAGGTGAAGATTTTACTGTGCGACAATGACTCCAAGAGTTCACAAGAGGTTTTTACACTTCTTTTGCGATGTTCATATCAGGTACGATCAGCTAGACAGGTGATTAATGCCTTGAATGCTGAGGGACCAGATATAGATATCATTCTAACTGAAGTAGATTTACCTATGGCCAAAGGTATGAAAATGCTCAAATACGTCACGCGGGATAAAGAGCTGCGACGTATTCCTGTGATTATGATGTCAGCGCAAGATGAGGTATCTGTTGTTGTTAAGTGCTTGAGGCTCGGAGCAGCGGACTACCTCGTGAAGCCTTTACGAACAAATGAGCTACTAAACTTGTGGACTCACATATGGAGAAGACGGCGCATGCTTGGGTTGACAGAGAAGCAAATTTTAAATTTCGACTTTGATTTGGCGACTTCGGATCTTAGTGACCGCAATACAAATAGCACTACTTTTCTCTCAGACGACACCGATGATAACACTCATAGGAGCATTAACCCAGAATTGGACATGCCCCGTCAGGAAGAATTGGACATGCCCCATCAGGAGGATATGTCTTCTGTTGCTGATGCCACTGCCACGGACCCTCCTGCGGCTGATTCATTGCAATTTCAGCCTAACGTGCAACTTATCGATGAAAACCATAACGGCCCTAAAAAGTGTAAACTGAAAATCGGAAAAATCGGAGAGTCCTCTGCCTTCTTTACATATTGCAAACCTAATGCATTGAAAAGCAACTTTCAAGCACCACCTGCTCAACAATTGGTAGAGAACCCTCTATCATCTGAACCTGATCAACTGGTATCTATTGACCATTCGCAAGGAGATGGCTGTCGGAGTAGTATTAGTGTTCCTGATTCTTGGTCCATGGAGATGTCTAGCAGTCCTCAAACGTTCCAATTTTCTCAACCAATGAGCCATGATGAAGAAAAGCTACAATTTTCTCAACCAATGAGCCATGATGAAGAAAAGCTATCTCAGGTGGTTGAGCATCCAAGAGACGAGTCTCGACCCGACGCTGCTGGATTACTGACTCAAACAAAGTATCCCTTTTATCTGCCTGGAGGCACGAATCAAGTTTTGATACCGCCGTCTACGGACTTCTACCACTGCAAGAATCAACATGATGGGCAAAATCATGTGACTGCAGCTGCAATGCCACAGTACAGTCATCTTCATCATTTCCCTCTTGCATCTGGGATGCCCCCATTTCCATATTATCCACTCAATATATGTTTGCAACCCAGTCAAATGCCTAGTTCTCATCCATGGCCGCCATCATTTGGAAACTCATCCTCCACTGAAGTGAAACTGAGTAAAGCTGATATAAGAGAGGCTGCTTTGATTAAATTTAGACAAAAGAGGAAAGAGCGATGCTTCGACAAGAAAATTAGGTACGAAAACCGTAAACAACTAGCTGAGAAGAGGCCTCGCGTGCGAGGACAATTTGTGAGGAATGGAGCAAATGTTGATCTCAATGGGCAACCTTCTTCAACTGGCAACGACAACGACGACGACGAAACGCTCTAA 1626 44.22 MMECKEINCNKDCGVGESNRGGGGAGFVDRSKVKILLCDNDSKSSQEVFTLLLRCSYQVRSARQVINALNAEGPDIDIILTEVDLPMAKGMKMLKYVTRDKELRRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHIWRRRRMLGLTEKQILNFDFDLATSDLSDRNTNSTTFLSDDTDDNTHRSINPELDMPRQEELDMPHQEDMSSVADATATDPPAADSLQFQPNVQLIDENHNGPKKCKLKIGKIGESSAFFTYCKPNALKSNFQAPPAQQLVENPLSSEPDQLVSIDHSQGDGCRSSISVPDSWSMEMSSSPQTFQFSQPMSHDEEKLQFSQPMSHDEEKLSQVVEHPRDESRPDAAGLLTQTKYPFYLPGGTNQVLIPPSTDFYHCKNQHDGQNHVTAAAMPQYSHLHHFPLASGMPPFPYYPLNICLQPSQMPSSHPWPPSFGNSSSTEVKLSKADIREAALIKFRQKRKERCFDKKIRYENRKQLAEKRPRVRGQFVRNGANVDLNGQPSSTGNDNDDDETL 541
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 877863 881446 + CmoCh11G001820.1 Cmo11g00182 390801

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00182 541 MobiDBLite consensus disorder prediction 319 341 - -
Cmo11g00182 541 PANTHER TWO-COMPONENT RESPONSE REGULATOR 4 524 IPR045279 GO:0009736
Cmo11g00182 541 MobiDBLite consensus disorder prediction 520 535 - -
Cmo11g00182 541 ProSiteProfiles Response regulatory domain profile. 34 149 IPR001789 GO:0000160
Cmo11g00182 541 MobiDBLite consensus disorder prediction 188 215 - -
Cmo11g00182 541 MobiDBLite consensus disorder prediction 502 541 - -
Cmo11g00182 541 ProSiteProfiles CCT domain profile. 476 518 IPR010402 GO:0005515
Cmo11g00182 541 SMART REC_2 33 145 IPR001789 GO:0000160
Cmo11g00182 541 Pfam Response regulator receiver domain 35 143 IPR001789 GO:0000160
Cmo11g00182 541 Pfam CCT motif 476 518 IPR010402 GO:0005515
Cmo11g00182 541 MobiDBLite consensus disorder prediction 178 219 - -
Cmo11g00182 541 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR1 4 524 - -
Cmo11g00182 541 SUPERFAMILY CheY-like 29 156 IPR011006 -
Cmo11g00182 541 Gene3D - 33 244 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00182 K12127 TOC1, APRR1; pseudo-response regulator 1 - tcc:18604747 604.364
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00182 Cmo-Chr11:877863 Cmo14g02228 Cmo-Chr14:15799629 2.64E-13 dispersed
Cmo19g00501 Cmo-Chr19:5952207 Cmo11g00182 Cmo-Chr11:877863 4.52E-10 dispersed
Cmo01g00841 Cmo-Chr1:4482550 Cmo11g00182 Cmo-Chr11:877863 0 wgd
Cmo11g00182 Cmo-Chr11:877863 Cmo13g01203 Cmo-Chr13:9454384 1.32E-110 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g586 . . . . . . . . . . . . . Car11g00166 . . Cpe04g01485 . . . . . . . . . . . . . . . . . . Lsi02g00088 . Chy12g01526 Cme12g01975 . . . . . . . . Sed08g2087 . Cmo11g00182 . . . . . . Bhi08g01139 Tan05g2421 Cmetu12g2014 Lac10g0096 Hepe07g2494 . . Cla04g01184 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003640 0 1 1 1 1 1 3 1 1 1 1 1 3 1 1 3 1 2 2 1 1 2 4 2 2 1 2 3 2 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10525 PF00072 Response_reg 4.00E-15 CL0304 Cmo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g00182 Cmo_Chr11 FPKM 3.573731 3.830186 2.60406 2.558315 6.802227 5.839791 6.742674 1.282515 1.015319 1.168182