Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00185 ATGGCTGATCCTTCGAACAGTTTGCCCGTGGATTCTCTCGGCGACATCGACGACTACATTTCGGCCAATGAAGGAGAGGGTTCATTAACATGGAACATGTTTAGTCATGTTTTTGAATTCGTACAAAATGGGAACCGAGCATTTAGAGATAATAACTTTGAAGAGGCAATCAAGTGTTACTCAAGAGCAAATAACATCAAACCAGGTGATCCGGTTATTCTCAACAACAGAAGTGCTGCTTATATCAGGATTAGTCGATTCCTCAAAGATAGACCACCGTCTGCTTCTGAATATCGACCATTGAATGGGTTGGATCCTACAGTACTTGCTGAACTTGCACTAAAAGATGCTGAGAAGCTGATGGACCAATGCAGTAAATCAGTGAAACCATATATTCTGAAGGCTAATGCTCTCATTCTCCTAGAAAAATATGACATAGCAAAGGATATTATTCTATCCGGCCTTCAAATTGACCCTCTAAGCAATCCTCTTCAGGCTTCTCTTCAGAGATTGGAGAGGATAGCTGTGAGTCAGACAGGAAGGGGACGCCATGGGCTACCAGATCGTAGTGATGAATTTGATTGCACCCTTTGTTTTAAGCTTCTTTATGAACCCATCACAACTCCCTGTGGGCATTCTTTTTGCCGTTCTTGCTTATTTCAGTCGATGGATCGTGGTAATAAATGTCCGCTGTGCCGAACAGTTCTTTTTATCAGTTCAAGAACATGTGCAATCAGTGTTACGCTGAGCAACATTATACAGAAGAACTTTCCAGAGGAGTATGCTGAAAGGAAGTCAGAACATGATGGTTTGGCAAATTTTGGTATCGATATAATGCCTCTTTTTGTCATGGATGTTGTTATCCCATGTCAGAAATTCCCGCTTCACATATTTGAACCCCGCTACAGACTTATGGTTATTGTGGATTCTACAACAGGTTCTATTGCTGATTTTGCATGTGAAGTGGAAATTACCGAGTGTGAGCCTCTTGCGGACGGACGATTCTATCTAGAGATTGAAAGTCGTCGAAGATTTCGCATTATTCGATCTTGGGATCAAGATGGGTATCGAGTGGCAGAGATCGAATGGGTCAATGATGTAGCTCCCGCAGAAGGGACAAGAGAGCAAGCAGAATTGCAGGAAATGACAAATAATGCAGCAGAGTACGCTCAGTCATGGATAAGGAAGGCAAAAGAAGCATCTAGACGAGATCATAGCAAACACGATAGACTTCTTAATGTGGAAGCAATGATGCCCTCATCACGAGATCCTGAACGGTTCAGCTTCTGGCTTGCTACCCTTTCAAATCGGAGGCCCCTGGAAAGATTGGAACTTCTACGAATGACAGATACAAGAGAGAGGATAAGGCGTGGACTTGTATATCTCAAAGCAGAAGAACAGGGGTGTCAGATGCAATGA 1419 42.92 MADPSNSLPVDSLGDIDDYISANEGEGSLTWNMFSHVFEFVQNGNRAFRDNNFEEAIKCYSRANNIKPGDPVILNNRSAAYIRISRFLKDRPPSASEYRPLNGLDPTVLAELALKDAEKLMDQCSKSVKPYILKANALILLEKYDIAKDIILSGLQIDPLSNPLQASLQRLERIAVSQTGRGRHGLPDRSDEFDCTLCFKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRTVLFISSRTCAISVTLSNIIQKNFPEEYAERKSEHDGLANFGIDIMPLFVMDVVIPCQKFPLHIFEPRYRLMVIVDSTTGSIADFACEVEITECEPLADGRFYLEIESRRRFRIIRSWDQDGYRVAEIEWVNDVAPAEGTREQAELQEMTNNAAEYAQSWIRKAKEASRRDHSKHDRLLNVEAMMPSSRDPERFSFWLATLSNRRPLERLELLRMTDTRERIRRGLVYLKAEEQGCQMQ 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 890779 901883 + CmoCh11G001850.1 Cmo11g00185 390804

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00185 472 Pfam Zinc finger, C3HC4 type (RING finger) 195 232 - -
Cmo11g00185 472 PANTHER RING FINGER PROTEIN 127 6 465 - -
Cmo11g00185 472 SMART lon_5 278 464 IPR003111 -
Cmo11g00185 472 SUPERFAMILY TPR-like 38 162 IPR011990 GO:0005515
Cmo11g00185 472 ProSiteProfiles Zinc finger RING-type profile. 195 233 IPR001841 -
Cmo11g00185 472 Gene3D Tetratricopeptide repeat domain 35 181 IPR011990 GO:0005515
Cmo11g00185 472 ProSitePatterns Zinc finger RING-type signature. 210 219 IPR017907 -
Cmo11g00185 472 SUPERFAMILY RING/U-box 187 256 - -
Cmo11g00185 472 Pfam ATP-dependent protease La (LON) substrate-binding domain 310 463 IPR003111 -
Cmo11g00185 472 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 273 IPR013083 -
Cmo11g00185 472 ProSiteProfiles TPR repeat profile. 37 70 IPR019734 GO:0005515
Cmo11g00185 472 SUPERFAMILY PUA domain-like 279 462 IPR015947 -
Cmo11g00185 472 PANTHER 43KDA POSTSYNAPTIC PROTEIN-RELATED 6 465 - -
Cmo11g00185 472 SMART ring_2 195 232 IPR001841 -
Cmo11g00185 472 Gene3D - 278 307 IPR046336 -
Cmo11g00185 472 Gene3D - 308 366 IPR046336 -
Cmo11g00185 472 Gene3D - 397 464 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00185 - - - cpep:111793369 917.146
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00075 Cmo-Chr8:396908 Cmo11g00185 Cmo-Chr11:890779 1.00E-06 dispersed
Cmo09g00126 Cmo-Chr9:585094 Cmo11g00185 Cmo-Chr11:890779 6.71E-12 dispersed
Cmo11g00185 Cmo-Chr11:890779 Cmo14g00714 Cmo-Chr14:3663596 1.68E-16 dispersed
Cmo14g01958 Cmo-Chr14:14456369 Cmo11g00185 Cmo-Chr11:890779 1.27E-06 dispersed
Cmo11g00185 Cmo-Chr11:890779 Cmo11g01643 Cmo-Chr11:11675605 3.51E-17 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g591 . . . . . . . . . . . Cma11g00126 . Car11g00169 Sed08g1458 . Cpe04g01483 Bhi02g00296 Tan09g2092 Cmetu06g0079 . . . . Cla06g01573 . . . . . . Cone2ag0829 Cone16ag0186 Cone13ag0056 Cone19ag0059 . . . . . . . . . . . . . . Cmo11g00185 . . . . . . . . . . . . . . . . . . . . Lsi06g01447 Csa01g00256 Chy02g02479 Cme02g01864
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008465 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 4 1 1 1 1 1 1 1 1 1 4 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g00185 Cmo_Chr11 FPKM 9.758756 10.109102 23.281998 22.855856 14.670403 17.608652 16.479542 8.115388 7.853055 6.900543