Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00193 ATGAATCTTCCGTCTCAGGGCGGTATTGAGAGAAAGATTCCTGATTGTCTGGATGCCCGCCGCAAGGAAGGCAATGACATGCGGAGCGACGGATATTTCCTCATGAAACTCATTGAGGACTCTGTTTCGAATAATGGGTTTGAATCTATTGCTCTTATTTTCTCTAAGTTTCGTGGTTCTATTAATTCTCAGATTTGTAACTCGATGATTAGGGGTTATTTGGATTCGAATGAGCATTTGAATTCACTTATCATTTTTGCTCACATGCATAAATTTAGCATTCTGCCTGATTCTTCTACTTTCCCGGCCGTTCTTAAAGCGACTGCACAGCTATGTGATATTAAACTTGGAAAAATGATACATGGTGCTGTTGTTCAAATGGGTTTCATTCGCGATGTCTACACAAGCACGGCTCTAGTGCACATGTATTGTTCTTGTTTGTCTATTTCCGATGCATCTCAGCTGTTCGACGAAATGCCTGAAAGAAATTCAGTTACTTGGAATGCGCTGATTACTGGTTATACACATAATAGGAAATTTAGGGAAGCTATCAATGCTTTCCGAGGAATGCTGGCAGCTGGGGCTGAACCGAGCGAGAGAACCGTGGTGGTAGTTCTATCTGCTTGTTCTCATTTGGGAGCTTTAAATCAGGGAAAGTGGATCCACGATTTTATATATCAGAATAAGTTGAGACTGAACGTGTTTGTAGGAACTGCACTTATTGATATGTATGCTAAATGTGGGGTTGTTGAGGAGGCAGAGAAGGTCTTCGAAGAAATTAGAGACAGGAACGTTTATACATGGAATGTCTTGATTTCTGGATATGGCATGAATGGCCAAGGCAATGCTGCTTTGCAGGTTTTTTCTAGGATGTTGATGGAAAATTTCAAACCAGACGCGGTTACCTTTCTAGGTCTCTTGTGTGCATGTTGTCACCAAGGTCTGGTCACAGAAGGGCGTCGACAATTCATAAGCATGAAACAACAGTTTGGACTGCAACCGAAGATTGAGCATTATGGGTGTATGGTTGACCTACTTGGTCGAGCAGGATTGTTAGAGGAAGCTCTAGAGTTAATCGAATCCATGAGCATGGAGCCGGATCCTATCATTTGGAGGGCTCTGCTTTGTGCTTGCCGAGTCCATGGGAATACAAAATTGGGTGAATATACTATCAGGAGACTTATTGAGTTAGAACCAAACAATGGGGAGAATTATGTCTTGCTATCAAATCTATACTCGAGGGAACGGCGGTGGATCGAAGTAGGAAAGTTGCGAGGAATGATGAGTCTCAGGGGGATTGAGAAAGTCCCTGGTTGCAGTTCAATTGAAATAAACAATGCAGTTCATGAGTTTACTGCATCAAATGACAGAAAACGAGAATTCAGTGCAATATATAAGCAGTTGGATAATGTGATGAAGAAACTGAAAGAGAATGGTTACGTTACAGGCACTGACATGTCTTTGTTTGATATTGAGAAAGAAGAGAAAGAACACTCTGTGATGTACCATAGCGAGAAACTTGCTTTGGCATTTGGTCTCTTAAACTCTCCTTTAGATTGCACCCTAAGGATAGTGAAAAATCTGAGAATTTGCTCGGATTGCCATGAGTTTTTCAAGGTCGTATCACTTGTCTATAAACGATATATTGTCGTTAGAGACCGAAACCGTTTCCATCATTTTTCTGAAGGCGTTTGTTCTTGCCGAGACTACTGGTGA 1716 41.55 MNLPSQGGIERKIPDCLDARRKEGNDMRSDGYFLMKLIEDSVSNNGFESIALIFSKFRGSINSQICNSMIRGYLDSNEHLNSLIIFAHMHKFSILPDSSTFPAVLKATAQLCDIKLGKMIHGAVVQMGFIRDVYTSTALVHMYCSCLSISDASQLFDEMPERNSVTWNALITGYTHNRKFREAINAFRGMLAAGAEPSERTVVVVLSACSHLGALNQGKWIHDFIYQNKLRLNVFVGTALIDMYAKCGVVEEAEKVFEEIRDRNVYTWNVLISGYGMNGQGNAALQVFSRMLMENFKPDAVTFLGLLCACCHQGLVTEGRRQFISMKQQFGLQPKIEHYGCMVDLLGRAGLLEEALELIESMSMEPDPIIWRALLCACRVHGNTKLGEYTIRRLIELEPNNGENYVLLSNLYSRERRWIEVGKLRGMMSLRGIEKVPGCSSIEINNAVHEFTASNDRKREFSAIYKQLDNVMKKLKENGYVTGTDMSLFDIEKEEKEHSVMYHSEKLALAFGLLNSPLDCTLRIVKNLRICSDCHEFFKVVSLVYKRYIVVRDRNRFHHFSEGVCSCRDYW 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 941656 943371 + CmoCh11G001930.1 Cmo11g00193 390812

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00193 571 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 163 197 IPR002885 -
Cmo11g00193 571 TIGRFAM PPR: pentatricopeptide repeat domain 266 300 IPR002885 -
Cmo11g00193 571 TIGRFAM PPR: pentatricopeptide repeat domain 238 265 IPR002885 -
Cmo11g00193 571 TIGRFAM PPR: pentatricopeptide repeat domain 165 198 IPR002885 -
Cmo11g00193 571 TIGRFAM PPR: pentatricopeptide repeat domain 339 363 IPR002885 -
Cmo11g00193 571 Pfam E motif 381 443 IPR046848 -
Cmo11g00193 571 Gene3D Tetratricopeptide repeat domain 289 510 IPR011990 GO:0005515
Cmo11g00193 571 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 28 545 - -
Cmo11g00193 571 PANTHER - 28 545 - -
Cmo11g00193 571 SUPERFAMILY TPR-like 244 418 IPR011990 GO:0005515
Cmo11g00193 571 Coils Coil 458 478 - -
Cmo11g00193 571 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 264 298 IPR002885 -
Cmo11g00193 571 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 233 263 IPR002885 -
Cmo11g00193 571 Gene3D Tetratricopeptide repeat domain 221 288 IPR011990 GO:0005515
Cmo11g00193 571 Pfam PPR repeat family 263 312 IPR002885 -
Cmo11g00193 571 Pfam PPR repeat family 163 210 IPR002885 -
Cmo11g00193 571 Pfam DYW family of nucleic acid deaminases 479 571 IPR032867 GO:0008270
Cmo11g00193 571 Gene3D Tetratricopeptide repeat domain 62 220 IPR011990 GO:0005515
Cmo11g00193 571 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 132 162 IPR002885 -
Cmo11g00193 571 Pfam PPR repeat 338 363 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00193 - - - cmax:111497411 1118.61
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00193 Cmo-Chr11:941656 Cmo14g02013 Cmo-Chr14:14742731 8.10E-57 dispersed
Cmo11g00193 Cmo-Chr11:941656 Cmo10g00608 Cmo-Chr10:2749382 8.32E-54 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g607 . . . . Bpe12g00530 . . . . . . Cma11g00119 . . . . . Bhi02g00283 . . . . . . Cla06g01564 . . . . . . . . . . . . . . . . . . . . . . . . Cmo11g00193 . . . Car18g00007 . . . . . . . . . . . . . . . . Lsi06g01438 Csa01g00268 Chy02g02467 Cme02g01854
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012910 0 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 0 0 1 1 1 0 0 0 1 1 0 0 1 19
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g00193 Cmo_Chr11 FPKM 16.94614 17.92012 17.42392 17.445372 15.868735 15.593898 16.331842 12.389246 14.840093 15.97227