Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00201 ATGTTCGATGTTCTGTTGATCAACCTCCACTTTTTATCCTTCTGGGACTGTTCAATTCATGAATTCAGAGGCTCGGGAACTAATATCCCTGAGACGGATTCGAAAAGCTTGTCATCACTATCATCGTTGTTCCTTTCTTGGAAGGCTGAGTTTTTCTCTGCTGCTGGCAACATGGGGTGCTATTCTAGCAAGAATGCAGATTCAAAGGCCAGCAGAGTTGCTCGATGGCAATCTACTGGCATCGTGGCTTTGCGAGACTCAAAGCTGAAGACATTTCCTGATGAAGTTCTTGACTTGGACAGATCTGTCCGCACCCTCGATTTAACTCACAATAAAATAGTTGATATTCCTATGGAAGTCTGCAAATTAATAAACATGCAGCGTCTGATATTGGCAGATAACCTTATTGAGCGTCTACCAATGAATTTGGGGAAGCTCCAATCTCTAAAAGTCATGATGCTTGATGGAAATCAAATTACGGCATTACCCGATGAATTGGGTCAGCTAGTAAGGCTTGAACGTTTATCTGTCTCCCGAAATTTGCTATCATCCTTACCTGAAACCATTGGAAGCTTGCGGAATTTATTTCTTATCAATGTGTCAAACAACAAGTTAAAATCTCTCCCAGAATCAATAGGAAGTTGTTTCTCCCTTGAAGAATTGCAAGCAAATGATAATCTTATGGAAGGCCTTCCCTCGTCTGTGTGCAATCTAATTCACCTGAAGTCGTTGTGTTTGGATAACAACAATATCGGTCAGCTACCATCGAATCTGTTGAAAGATTGCAAAGCATTGCATAATGTATCTTTACATGGTAATCCAATTATAATGGATCAATTTCAGCAGATGGAAGGATTTGATGAATTTGAAGGTAGGAGAAAAAAGAAATTTGACAAACAAATTGATTCCAATGTCATGATCGAAAAATTATTGAAGGAGACGGTTTGCTTGTTTGCTTCCATTTGCTGTAAATTCAAAGTGTGTGAAAGAATTGGGACCCAATTGTGCAACGTTTTGCAACATAAACTGTACACAGGAGGGGGCTCCGGTACCACTGCAATCTGGTTTTGTTTCATCCTCCTCTACATATCGATCTCAATTTTGCCGTTTTCGTCTTCTTTTTACGTTTATTGTCTTAGGTCGTCATCGAAGCTCCGATCCTTGAGGCTAATCGGAGATCTGTTCTTTCCAACGCTGGTTCTGATCACAATTGGTGCTGCCGTTAAAATGGTACAGAAACGGTCTTTTGATGATGGAGAACCACTTGAGATCTCTTCCAAGCACTTGAAACAAGTGGTTGAACAAAGCAATCAAATAATGTCATTTTCAGAATCTGTTATCCCTGAAGATCCTCTACAATATTATTTTGCTCTAGGGGAGGAATTTCCAAAGAATGATATAGAAAGTGACGAAAAGCATTCAAGTGGAGTTTTCTCAGAGCCCCAGGGAAGCAGTGATGACTTTGATACTAGTATTCCTGGCTTCATGTCCTTCTCTTGCACGAACAATATTAAGGCCCATGAAGAGGGATCCCCATCTAAATCTCATCGACATTATTCTATTTCCTCTGATTTTTTTAACCCTGTAAATCATCAGCGAAGGATTTTGACGTACTGTGAAGAAATATATTCTTTACTATTGGACCACCCTCCTCAAAAATCTGTTTCCATTGGTCCTGATCATCAAGCTATTGTTCCACCATGGAGATCAGGGGATGTGGAGGTTATGCCTTATGTGTCCGAATCAGATTCAAAGTCTGATCTTACGGTTGATGAATATGAGAAGAGGTTGATTGGTACTTGTGTTATTCCAATGCCTGATGTGGATTCAGAAGTTGGGAGTGGAAGAGCAGCTTGCAGCTGTGAGGATGGTGGATCTGTGGGATGTGTTAGTGCGCACATTGCAGTTGCAAGGGAGCAACTTAAAAGTTCTATTGGACCAGAAAAATTTGTGGAGCTAGGGTTTTCTGAAATGGGAATGCAAGTGGCCCAGAAATGGAGTGAAGAAGAAGAACGATTGTTTTATGAAGTTGTTTTTTCCAATCCAGTCTCACTGGGGAAAAACTTCTGGGGTGATCTTTTGGACGTTTTTCCTTCCAAATCTAAAATGGAGATTGTTAGCTACTACTTCAACGTTTTTATGCTCAGAAGGCGAGCAGAGCAGAACAGATGTGATTCATTAAACATTGATAGTGACAATGATGAGTGGCAAGGGAATGATGACTATGGCGACAATGAACCTGGAATGACGGAAGAGGATGACGACTCTGTTATTGAATCACCACTACACGAAGTTGGGCCTGTATTCAATCATGGCCGGGAAGATGATTTGCAGGAGTATGACGAGGATATTACCGATGAAAGATTTGATGATAATGAAAGTGAGGGAATTGGTAATTGTTTCAATAATTTTGGTTCCAGTCCCGCTCTTCAGGACAAAATTCCTTGTGATGAAAGGGGAGGAGAACACGAAGTTCAAGATGATTCCTGCACATCATCTGAGACGTGTCCTGCAACCCAAGAACTTCCAGCCAAGACGGAGCATTGTGATCAATGGCTGGGTAGCTTTACGGGGCCAAGCAATAGTGTTGGTCTTGGTCATGGGCCCTCATCGGTTCAAGATCATTGTGATGCTAAGGTGTGGGATGTTGGATACTTGACTTGTTCGAAAAGTGAAGTTGACTTCTTGCCAACTAGCTGTATGATAGAAGAAGTTTTTGGAGATGGTTCGAGTAATTACAAGGCAAGGGACGGGAAGAGCTAG 2763 41.37 MFDVLLINLHFLSFWDCSIHEFRGSGTNIPETDSKSLSSLSSLFLSWKAEFFSAAGNMGCYSSKNADSKASRVARWQSTGIVALRDSKLKTFPDEVLDLDRSVRTLDLTHNKIVDIPMEVCKLINMQRLILADNLIERLPMNLGKLQSLKVMMLDGNQITALPDELGQLVRLERLSVSRNLLSSLPETIGSLRNLFLINVSNNKLKSLPESIGSCFSLEELQANDNLMEGLPSSVCNLIHLKSLCLDNNNIGQLPSNLLKDCKALHNVSLHGNPIIMDQFQQMEGFDEFEGRRKKKFDKQIDSNVMIEKLLKETVCLFASICCKFKVCERIGTQLCNVLQHKLYTGGGSGTTAIWFCFILLYISISILPFSSSFYVYCLRSSSKLRSLRLIGDLFFPTLVLITIGAAVKMVQKRSFDDGEPLEISSKHLKQVVEQSNQIMSFSESVIPEDPLQYYFALGEEFPKNDIESDEKHSSGVFSEPQGSSDDFDTSIPGFMSFSCTNNIKAHEEGSPSKSHRHYSISSDFFNPVNHQRRILTYCEEIYSLLLDHPPQKSVSIGPDHQAIVPPWRSGDVEVMPYVSESDSKSDLTVDEYEKRLIGTCVIPMPDVDSEVGSGRAACSCEDGGSVGCVSAHIAVAREQLKSSIGPEKFVELGFSEMGMQVAQKWSEEEERLFYEVVFSNPVSLGKNFWGDLLDVFPSKSKMEIVSYYFNVFMLRRRAEQNRCDSLNIDSDNDEWQGNDDYGDNEPGMTEEDDDSVIESPLHEVGPVFNHGREDDLQEYDEDITDERFDDNESEGIGNCFNNFGSSPALQDKIPCDERGGEHEVQDDSCTSSETCPATQELPAKTEHCDQWLGSFTGPSNSVGLGHGPSSVQDHCDAKVWDVGYLTCSKSEVDFLPTSCMIEEVFGDGSSNYKARDGKS 920
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 978871 988248 - CmoCh11G002010.1 Cmo11g00201 390820

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00201 920 PANTHER DNA BINDING PROTEIN 410 915 - -
Cmo11g00201 920 SMART LRR_bac_2 146 165 - -
Cmo11g00201 920 SMART LRR_bac_2 238 257 - -
Cmo11g00201 920 SMART LRR_bac_2 192 211 - -
Cmo11g00201 920 SMART LRR_bac_2 169 188 - -
Cmo11g00201 920 SMART LRR_bac_2 217 234 - -
Cmo11g00201 920 SMART LRR_typ_2 192 215 IPR003591 -
Cmo11g00201 920 SMART LRR_typ_2 238 261 IPR003591 -
Cmo11g00201 920 SMART LRR_typ_2 169 191 IPR003591 -
Cmo11g00201 920 SMART LRR_typ_2 146 168 IPR003591 -
Cmo11g00201 920 SMART LRR_typ_2 123 145 IPR003591 -
Cmo11g00201 920 PANTHER DNA BINDING PROTEIN 410 915 - -
Cmo11g00201 920 Pfam Leucine rich repeat 148 205 IPR001611 GO:0005515
Cmo11g00201 920 Gene3D Ribonuclease Inhibitor 4 299 IPR032675 -
Cmo11g00201 920 MobiDBLite consensus disorder prediction 466 485 - -
Cmo11g00201 920 CDD SANT 665 713 IPR001005 -
Cmo11g00201 920 SUPERFAMILY L domain-like 80 277 - -
Cmo11g00201 920 MobiDBLite consensus disorder prediction 728 754 - -
Cmo11g00201 920 MobiDBLite consensus disorder prediction 734 754 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00201 - - - mcha:111006796 897.501
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo10g00236 Cmo11g00201 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00201 Cmo-Chr11:978871 Cmo20g00358 Cmo-Chr20:1760644 7.87E-47 dispersed
Cmo10g00236 Cmo-Chr10:1059254 Cmo11g00201 Cmo-Chr11:978871 1.74E-171 transposed
Cmo10g00235 Cmo-Chr10:1053943 Cmo11g00201 Cmo-Chr11:978871 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g624 . . . . . . . . . . Cma10g00225 . Car10g00209 Car11g00122 . . Cpe04g01470 Bhi02g00262 Tan09g2060 . . . . . Cla06g01553 Cam06g1716 Cec06g1777 Cco06g1776 Clacu06g1684 Cmu06g1629 Cre06g2440 . . Cone13ag0044 Cone19ag0049 . . . . . . . . . . . . . Cmo10g00236 Cmo11g00201 . . . . . Cpe18g00768 . . . . . . . . . . . . . . Lsi06g01427 Csa01g00277 Chy02g02455 Cme02g01843
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004521 2 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g00201 Cmo_Chr11 FPKM 28.227545 29.917038 25.38106 26.170635 27.211086 25.815195 26.701168 44.693302 47.227573 44.566536