Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00202 ATGCCTAAAATGAAAATCCATCTTTGGATCAACGACGTTGAATTGGAATCAGATGGAGATGATAACACAACGAATTTGAGTGGGCCAAAACCTAGTTCGAACGCTGACAAGACGTCCGTTTGCGCGACGCCGAGCGTTCACCGGCGACCACGCGGCGGATTTGCGGTTCTCCAAGTGTTTCTTCACGAAGATTCGCTTCTAGCCAGGGAGATGGGGGGAGAAAATGACATGAAAACGTGGATTTCTGATCAGTTAATGTCACTGCTTGGTTTCTCTCAGCCAACGATTGTACAGTATATGATTGGACTATCCAAACAAGCAGCATCACCTGCCGATGTAGTGAGCAAGTTGGTGGTGGATTTTGGCTTGCCATCTTCCAATGAAACATTGGCTTTTGCTGAAGGAATTTTCTCTAGAGTGCCACGCAAGAAATCAACTGGTCTAAATCTTTATCAGAAGCAAGAGAGAGAAGCTGCAATTTTAGCAAGAAATCAAAAAAAATATACACTACTCGATGCTGACGACGAAGAAGTTCTTGAAGATAAAGGAGGCAGTGGTGATCCCCGAGAAACAGAAAATCGCAAAAAACGCTTTAGAAAGAAAAACGAATATCAAGAAGATGAAGATGATGAGGAAGAAAGTGCTCTTGAAAGAGAAAATAGGCAGGTTAAAAGACGAACTTCCAGTTCTGAAGATGATGGCTCTGAGTCGGAGGAAGAGCGACAGCGTGATCAAAGAGAGAGGGAGCAGTTAGAGCGAAATATAAGAGAACGTGATGCTGCTGGAACCAAAAAGTTAACAGAACAGAAATTGAGCAGGAAGGAGGAAGAAGAGGCAATTCGGAGATCCAAAGCTTTGGAGAATGATGGAACTGATACTTTGAGGAAAGTTTCAAGACAGGAGTACTTAAAGAAAAGGGAGGAGAAGAAACTGGAAGAAATCAGAGATGATATAGAAGACGAGCAATATCTTTTTGACGGTGTGAAGCTTACTGAAGTAGAATATCGGGAACTAAGGTATAAGAAAGAAATATATGAGCTTGTGAAGAAGCGGACAGACGAGGCTGATGAAATCAATGAGTACAGGATGCCTGAAGCTTATGATCAGGAAGGAGGTGTTAATCAGGATAAGAGGTTTGCAGTGGCAATGCAGCGGTATAGGGATTCAGGTGCTGCAGATAAAATGAACCCATTTGCAGAACAAGAGGCATGGGAGGACCACCAAATAGGGAAAGCATCAATGAAATTTGGTTCCAAAAATAAGAAGCAAGCCGATGATTATCAGTTTGTATTTGAGGATCAGATTGAGTTTATTAAGGCTTCAGTTATGGAAGGTGATGAGTTTGTTGATGAACATCAGATTGAATCACTTGAAAAGTCCAAGGCGAAGTCAGCTCTGGAGAAGCTGCAGGAAGAGAGAAAAACATTGCCAATTTATCCATATCGTGATCAGTTACTCCAAGCTGTAAATGATTATCAGGTTCTTGTAATTGTCGGTGAAACTGGTTCGGGAAAAACCACACAGATACCTCAATATCTTCATGAAGCTGGGTACACAAAGCGAGGAAAAGTTGGATGCACACAACCGCGTCGAGTTGCAGCTATGAGCATTGCTGCCCGAGTATCTCAAGAACTGGGTGTCAAGCTTGGCCATGAGGTTGGTTATTCAATACGTTTTGAGGATTGCACGTCAGATAAGACTATTTTGAAGTACATGACAGATGGGATGTTGTTACGAGAATTCCTTGGCGAACCTGACCTTGCAAGCTACAGTGTTATAATGGTGGACGAGGCTCATGAAAGAACATTATCAACTGATGTTCTGTTTGGGTTAGTGAAGGATATTGCGAGGTTTCGACCTGATTTGAAATTGCTAATTTCAAGTGCAACACTTGATGCGGAGAAGTTCAGTGATTACTTTGATTCAGCTCCAATATTTAAAATTCCTGGTAGACGATATCCTGTAGAAATTAACTTCACAAAAGCTCCAGAAGCGGACTATTTAGATGCAGCAATTGTGACTGCGCTTCAGATTCATGTCACAAAGCCTCCAGGAGATATATTGGTGTTTCTCACTGGTCAAGAAGAGATTGAAGCGGCTGAGGAAATAATGAAACATAGAACTCGAGGACTAGGCACAAAAATTGCCGAACTCATTATCTGCCCCATATATGCCAACTTACCAACAGAGCTACAGGCTAAGATATTTGAACCCACACCCATAGGAGCAAGGAAAGTTGTCCTGGCAACTAATATAGCAGAGACATCATTAACGATTGATGGAATAAAATATGTTATTGATCCTGGCTTTTCAAAAATAAAATCCTATAATCCAAGGACTGGGATGGAGTCGTTGCAAGTGAGTCCCATTTCTAAAGCATCAGCAAACCAAAGAGCAGGCCGTTCTGGACGAACAGGCCCTGGAATGTGCTTTCGTTTGTATACTGCTTATAGTTATTATAATGAGATGGAAGACAATACAGTACCAGAAATTCAAAGAACAAACCTTGCTAATGTTGTGCTTACACTTAAGAGCCTTGGTATTCATGACTTGGTAAATTTTGATTTTATGGACCAACCTCCATCTGAAGCATTGTTAAAAGCTTTGGAACTTCTCTATGCACTTGGTGCTTTAAATAAACTGGGCGAACTGACTAAGATGGGCAGGCGGATGGCTGAGTTTCCTCTTGATCCCATGCTTTCCAAGATGATGGTTGCTTCTGAGAAGCACAAGTGTTCAGATGAGATTATTTCTATTGCAGCTATGCTCTCTATTGGAAATTCTATCTTTTATCGCCCGAAGGATAAACAAGTTCATGCTGACAATGCTCGAATGAATTTTCACACTGGGAATGTGGGGGATCACATTGCATTGCTGAAGGTCTACAACTCTTGGAGGGAAACAAATTACTCTACGCAATGGTGCTATGAGAACTACATCCAGGTTAGAAGTATGAAACGTGCTAGAGATATCAGAGATCAACTTGAAGGGCTATTAGAAAGGGTTGAAATCGAACTGACTTCAAACTTGAATGACTTGGATGCAATAAAGAAGACCATAATATCTGGTTTTTTCCCTCACTCTGCAAAGTTACAAAAGAATGGCTCGTACCGGACCATTAAGCATCCACAGACAGTTCATATACATCCAAGCTCAGGGTTGGCTCAGGTTCTTCCCAGATGGGCTGTGTACCATGAATTAGTATGTACCTCAAAGGAATACATGAGACAGGTAACGGAATTGAAGCCCGAATGGTTGGTTGAAATTGCTCCACATTTCTATCAGCTTAAAGATGTCGAAGATTTGAGTCAAAAGAAGATGCCTCGCGGACAAGGTCGACCTGCAGAGAACTAA 3354 41.77 MPKMKIHLWINDVELESDGDDNTTNLSGPKPSSNADKTSVCATPSVHRRPRGGFAVLQVFLHEDSLLAREMGGENDMKTWISDQLMSLLGFSQPTIVQYMIGLSKQAASPADVVSKLVVDFGLPSSNETLAFAEGIFSRVPRKKSTGLNLYQKQEREAAILARNQKKYTLLDADDEEVLEDKGGSGDPRETENRKKRFRKKNEYQEDEDDEEESALERENRQVKRRTSSSEDDGSESEEERQRDQREREQLERNIRERDAAGTKKLTEQKLSRKEEEEAIRRSKALENDGTDTLRKVSRQEYLKKREEKKLEEIRDDIEDEQYLFDGVKLTEVEYRELRYKKEIYELVKKRTDEADEINEYRMPEAYDQEGGVNQDKRFAVAMQRYRDSGAADKMNPFAEQEAWEDHQIGKASMKFGSKNKKQADDYQFVFEDQIEFIKASVMEGDEFVDEHQIESLEKSKAKSALEKLQEERKTLPIYPYRDQLLQAVNDYQVLVIVGETGSGKTTQIPQYLHEAGYTKRGKVGCTQPRRVAAMSIAARVSQELGVKLGHEVGYSIRFEDCTSDKTILKYMTDGMLLREFLGEPDLASYSVIMVDEAHERTLSTDVLFGLVKDIARFRPDLKLLISSATLDAEKFSDYFDSAPIFKIPGRRYPVEINFTKAPEADYLDAAIVTALQIHVTKPPGDILVFLTGQEEIEAAEEIMKHRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPIGARKVVLATNIAETSLTIDGIKYVIDPGFSKIKSYNPRTGMESLQVSPISKASANQRAGRSGRTGPGMCFRLYTAYSYYNEMEDNTVPEIQRTNLANVVLTLKSLGIHDLVNFDFMDQPPSEALLKALELLYALGALNKLGELTKMGRRMAEFPLDPMLSKMMVASEKHKCSDEIISIAAMLSIGNSIFYRPKDKQVHADNARMNFHTGNVGDHIALLKVYNSWRETNYSTQWCYENYIQVRSMKRARDIRDQLEGLLERVEIELTSNLNDLDAIKKTIISGFFPHSAKLQKNGSYRTIKHPQTVHIHPSSGLAQVLPRWAVYHELVCTSKEYMRQVTELKPEWLVEIAPHFYQLKDVEDLSQKKMPRGQGRPAEN 1117
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 988401 1001707 + CmoCh11G002020.1 Cmo11g00202 390821

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00202 1117 Gene3D - 431 651 IPR027417 -
Cmo11g00202 1117 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 591 600 IPR002464 -
Cmo11g00202 1117 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 1016 1092 IPR011709 -
Cmo11g00202 1117 MobiDBLite consensus disorder prediction 20 41 - -
Cmo11g00202 1117 Pfam Helicase conserved C-terminal domain 678 806 IPR001650 -
Cmo11g00202 1117 PANTHER ATP-DEPENDENT RNA HELICASE 178 1113 - -
Cmo11g00202 1117 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 486 649 IPR014001 -
Cmo11g00202 1117 CDD SF2_C_RHA 653 814 - -
Cmo11g00202 1117 Coils Coil 297 324 - -
Cmo11g00202 1117 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 672 847 IPR001650 -
Cmo11g00202 1117 MobiDBLite consensus disorder prediction 182 205 - -
Cmo11g00202 1117 MobiDBLite consensus disorder prediction 178 300 - -
Cmo11g00202 1117 SMART ultradead3 474 658 IPR014001 -
Cmo11g00202 1117 Coils Coil 452 472 - -
Cmo11g00202 1117 Gene3D - 852 1009 - -
Cmo11g00202 1117 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 471 1000 IPR027417 -
Cmo11g00202 1117 MobiDBLite consensus disorder prediction 239 300 - -
Cmo11g00202 1117 SMART ha2_5 867 959 IPR007502 GO:0004386
Cmo11g00202 1117 Coils Coil 234 261 - -
Cmo11g00202 1117 MobiDBLite consensus disorder prediction 18 44 - -
Cmo11g00202 1117 Gene3D - 652 827 IPR027417 -
Cmo11g00202 1117 SMART helicmild6 701 806 IPR001650 -
Cmo11g00202 1117 Pfam Helicase associated domain (HA2) 868 942 IPR007502 GO:0004386
Cmo11g00202 1117 Coils Coil 985 1005 - -
Cmo11g00202 1117 MobiDBLite consensus disorder prediction 216 232 - -
Cmo11g00202 1117 PANTHER OS05G0389800 PROTEIN 178 1113 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00202 K12813 DHX16; pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:3.6.4.13] - csv:101206270 1867.43
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00085 Cmo-Chr5:340933 Cmo11g00202 Cmo-Chr11:988401 1.16E-174 dispersed
Cmo11g00202 Cmo-Chr11:988401 Cmo12g01114 Cmo-Chr12:10181874 0 dispersed
Cmo11g00202 Cmo-Chr11:988401 Cmo05g01198 Cmo-Chr5:9380059 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g625 . . Bda06g00528 . . . . Bma12g00972 . . . . . Car11g00178 . . Cpe04g01469 Bhi02g00257 . . . . . . . . . . . . . . . . . . . . . . Blo15g00330 . . Bpe07g00762 . . . . . Cmo11g00202 . . . . Cpe09g01050 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005975 1 6 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g00202 Cmo_Chr11 FPKM 4.642857 6.226593 7.234687 7.044484 7.401368 8.634086 7.087362 13.341085 11.399253 10.967128