Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00212 ATGGCGAATGCACCTACCCCAGGCGGGATTTCCAAGATCTTGGCGAATCCATCCCCGGATTCCGCCTCCGATGTCCCTCAGGTTGTGCTTCAGGTCCTCGATCTCAAGGCGACGGGAAATCGCTACATGTTTACTGCTGCCGATGGGGATATGAAGCTAAAATCCATTCTTCCTTCAAACCTTACATCAGAGGTCATATCTGGAAACATTCAAAATCTGGGTCTTATTCGCGTTCTTGATTATTCTCTCAATGACATTCCGAACAAGCCAGAAAAGTATCTAATCGTGACAAAATGTGAGGTGGTGTCTTCTGCTCTAGAGAAGGAGGTAAAATTTGAGGTTAAGAAAGAGGAAGCAGATATTGTTTTGAAACCCAAGCAAGAGTTAGACGATAAGAGTGCGGTTAATACTGGATCTGGCATTCTTTTAAAACCAAAGCAAGAATTGGTTGCCAAATCAGCTGCCCAGATTGTACATGAGCAGAGTACAAATATGGCACCATCTGCACGGATGTCCATGACAAGGCGGGTTCATCCGCTTGTCTACTTAAATCCGTACCAGGGAGATTGGACTATCAAAGTTCGTGTTACAGACAAGGGAAATCTGCGTACATACAAGAATGCTCAGGGAGAAGGTTGTGTTTTCAATGTGGTGTTGACAGATGAAGATGGGACACAAATACAAGCAACGATGTTCAATGAAGCTGCAAGAAAGTTCTATGAGAAGTTTTCCCTTGGCAAAGTTTACTACGTTTCCAGGGGAACTTTGAAAGTTGCAAATAAAAAATTTAAGACAGTTCAAAATGATTATGAAATGACATTAAATGTGAATTCTCAAGTAGACGAGGTCACCAACGAAGCTGCTTTCGTCCCTGAAACCAAGTTCAATTTTGTCAAGATTGATATGTTAGGTCCTCACGTGAATGGAAGAGATCTTGTTGATGTTGTTGGAGTTGTACAAAGTGTTTCTCCTACCATGAGCATTAGAAGGAAAATCAACAATGAGACAGCTCCAAAACGTGATGTAACTATTGCTGATGAGACAAAGAAGACTGTTGTGGTATCTTTGTGGAATGATCTTGCTACCACCGTGGGGCAGGAGTTGCTTGACATTGTTGATCAATCTCCCATAATTGCATTGAAGTATCTTAGAGTCGGAGATTTTCAAGGTGTATCTTTGTCAACTATAAGTAGGAGCTCAATTTTAATAAATCCAGACATAAAGGAAGCACATCAATTGAGATCATGGTACGACTCTGAAGGAAAAGCCATATCCATGGCTTCTGTCAGCTCTGGCATGAGCCCCTCATCCAAAAGTGGGTCGAGATCCATGTACACTGACCGGGTCTCCCTGTCTCATATACTCCAAAACAAATCTTTGGGAGAAGAAAAGCCAATGTTCTTCAGCATAAGAGCATATGTCAGCTTTATTAAACCTGATCAAACAATGTGGTATCGGGCTTGTAAGACATGCAACAAGAAGGTGACCGATGCCATTGGATCTGGATATTGGTGCGAAAGCTGCCAGAAAAACGACGAAGAATGCAGCTTAAGGTACATAATGGTCGTAAGAGTTTCTGATGCCAGTTGTGAGGCTTGGCTCTCCACATTCAATGCGGAAGCGGAGAGGATTGTTGGGTGCACTGCCGAAGAACTTGACGGGCTCAAATCACAGATTGGAGAGGAGGCTTCATATCAGCTGAAACTCAAAGAAGCCACTTGGGTTCCACATTTATTTCGAGTTAGTGTCTCTCAGAATGAGTACAACAATGAGAAGAGGCAAAGGATCACTGTCAGGTCCGTCGCTCCAGTTGACTTCGCTGCGGAGTCCAGATTTTTGCTTGAAGAAATAGCAAAGATGAAAGCTTCGTAG 1872 43.0 MANAPTPGGISKILANPSPDSASDVPQVVLQVLDLKATGNRYMFTAADGDMKLKSILPSNLTSEVISGNIQNLGLIRVLDYSLNDIPNKPEKYLIVTKCEVVSSALEKEVKFEVKKEEADIVLKPKQELDDKSAVNTGSGILLKPKQELVAKSAAQIVHEQSTNMAPSARMSMTRRVHPLVYLNPYQGDWTIKVRVTDKGNLRTYKNAQGEGCVFNVVLTDEDGTQIQATMFNEAARKFYEKFSLGKVYYVSRGTLKVANKKFKTVQNDYEMTLNVNSQVDEVTNEAAFVPETKFNFVKIDMLGPHVNGRDLVDVVGVVQSVSPTMSIRRKINNETAPKRDVTIADETKKTVVVSLWNDLATTVGQELLDIVDQSPIIALKYLRVGDFQGVSLSTISRSSILINPDIKEAHQLRSWYDSEGKAISMASVSSGMSPSSKSGSRSMYTDRVSLSHILQNKSLGEEKPMFFSIRAYVSFIKPDQTMWYRACKTCNKKVTDAIGSGYWCESCQKNDEECSLRYIMVVRVSDASCEAWLSTFNAEAERIVGCTAEELDGLKSQIGEEASYQLKLKEATWVPHLFRVSVSQNEYNNEKRQRITVRSVAPVDFAAESRFLLEEIAKMKAS 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1048642 1052009 + CmoCh11G002120.1 Cmo11g00212 390831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00212 623 Pfam Replication factor-A C terminal domain 467 613 IPR013955 -
Cmo11g00212 623 PANTHER REPLICATION FACTOR A 1, RFA1 5 618 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Cmo11g00212 623 SUPERFAMILY Nucleic acid-binding proteins 445 620 IPR012340 -
Cmo11g00212 623 Gene3D - 290 430 IPR012340 -
Cmo11g00212 623 Pfam OB-fold nucleic acid binding domain 190 275 IPR004365 GO:0003676
Cmo11g00212 623 CDD RPA1_DBD_B 323 418 - -
Cmo11g00212 623 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-RELATED 5 618 - -
Cmo11g00212 623 SUPERFAMILY Nucleic acid-binding proteins 295 424 IPR012340 -
Cmo11g00212 623 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 6 619 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Cmo11g00212 623 Gene3D - 6 111 IPR012340 -
Cmo11g00212 623 Pfam Replication factor-A protein 1, N-terminal domain 6 103 IPR007199 GO:0003677|GO:0005634|GO:0006260
Cmo11g00212 623 SUPERFAMILY Nucleic acid-binding proteins 3 108 IPR012340 -
Cmo11g00212 623 Gene3D - 174 282 IPR012340 -
Cmo11g00212 623 MobiDBLite consensus disorder prediction 1 22 - -
Cmo11g00212 623 Pfam Replication protein A OB domain 308 404 IPR031657 -
Cmo11g00212 623 SUPERFAMILY Nucleic acid-binding proteins 178 286 IPR012340 -
Cmo11g00212 623 CDD RPA1_DBD_C 455 619 IPR013955 -
Cmo11g00212 623 CDD RPA1_DBD_A 179 282 - -
Cmo11g00212 623 Gene3D - 431 620 IPR012340 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00609 Cmo-Chr6:3004021 Cmo11g00212 Cmo-Chr11:1048642 1.96E-78 dispersed
Cmo11g00212 Cmo-Chr11:1048642 Cmo16g01260 Cmo-Chr16:8986534 7.51E-87 dispersed
Cmo11g00212 Cmo-Chr11:1048642 Cmo05g01408 Cmo-Chr5:10840348 2.29E-96 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00212 K07466 - csv:101208545 1076.23