Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00214 ATGTTGAGAAGCTCAAAAGAAAAGGGTTTTGGAGGCAAAGAAGAAGGAATCAGTGATGAAAAATATGATATGGCTAAGGGTTCAACGAGGTCAAGGCAGTGGTCAGGGTTTAGAAATCCAAGAATTGTGAGGGTTTCTCGTTCATTTGGAGGCAAAGATAGGCATAGCAAAGTGTGTACTATTAGGGGTTTGAGAGATAGAAGGATAAGGCTTTCAGTTCCAACAGCAATTCAACTCTATGATCTTCAAGACAAGCTTAAACTTGGGCAGCCTAGCAAGGTCATAGATTGGCTACTCGACGTCACGAAACTTGATATCGACAAGCTTCCGCCGCTCCAGATCCCGACCGGGTTGTCTCCGTTTCACCAACATATGCTCTTCCCTCAATATCATCATAATTCTAGTACTCTCCCTCTTCCTCTTCCTACTCCTCCTCCGTTTGCCTTCGACATGAAGGATCCTTCGATGATGCATATCAGAGACGTTGTGAATCAAACGACGATGATCGAGAAATCGAAGTCGAAAGGGAAGTGGATTGATGGAGGTAATGATCAAGAAGTTGAAGATTATAATGAGCAAATTATGATGAACAATTGTAATGCTTACAATTACAACACTTGTGATCATGATCATCAACATTCTTGTGGGGTTTTTCCATCACAAATTGAGGCTCAAACAAGTTCATCTTCATGTTCTTCACTTGTTTTCACTCCATATGCTTCATACATCACAAACCCATTTGAAAGCCACATCCATTTCTTGAGCTCAAATTCTCATACTTTGTCCAATCCCTTCATACCATCATCTCTCCACCCTTTTGCCTCACAAAACTTGAAACCCTTTCCTCCAAACTTCAATCTCAAGCAGCTTCTTCATGCTGGCAACAACGACGGCGGCGGCTCCGGTAAAGACGGGGCGGCGTCTGGTAGCTCATAG 936 42.95 MLRSSKEKGFGGKEEGISDEKYDMAKGSTRSRQWSGFRNPRIVRVSRSFGGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLKLGQPSKVIDWLLDVTKLDIDKLPPLQIPTGLSPFHQHMLFPQYHHNSSTLPLPLPTPPPFAFDMKDPSMMHIRDVVNQTTMIEKSKSKGKWIDGGNDQEVEDYNEQIMMNNCNAYNYNTCDHDHQHSCGVFPSQIEAQTSSSSCSSLVFTPYASYITNPFESHIHFLSSNSHTLSNPFIPSSLHPFASQNLKPFPPNFNLKQLLHAGNNDGGGSGKDGAASGSS 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1068115 1069050 + CmoCh11G002140.1 Cmo11g00214 390833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00214 311 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 28 310 IPR005333 GO:0003700
Cmo11g00214 311 MobiDBLite consensus disorder prediction 291 311 - -
Cmo11g00214 311 ProSiteProfiles TCP domain profile. 51 109 IPR017887 -
Cmo11g00214 311 PANTHER TRANSCRIPTION FACTOR TCP5 28 310 - -
Cmo11g00214 311 MobiDBLite consensus disorder prediction 1 26 - -
Cmo11g00214 311 Pfam TCP family transcription factor 51 114 IPR017887 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo11g00214 Cmo13g01114 CCT
Cmo10g00314 Cmo11g00214 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00439 Cmo-Chr1:2133762 Cmo11g00214 Cmo-Chr11:1068115 5.74E-40 dispersed
Cmo11g00214 Cmo-Chr11:1068115 Cmo14g01189 Cmo-Chr14:10009759 6.48E-42 dispersed
Cmo10g00314 Cmo-Chr10:1404121 Cmo11g00214 Cmo-Chr11:1068115 6.86E-133 wgd
Cmo11g00214 Cmo-Chr11:1068115 Cmo13g01114 Cmo-Chr13:9110094 3.65E-40 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10529 PF03634 TCP 5.60E-23 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00214 - - mcha:111007241 384.8