Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00214 ATGTTGAGAAGCTCAAAAGAAAAGGGTTTTGGAGGCAAAGAAGAAGGAATCAGTGATGAAAAATATGATATGGCTAAGGGTTCAACGAGGTCAAGGCAGTGGTCAGGGTTTAGAAATCCAAGAATTGTGAGGGTTTCTCGTTCATTTGGAGGCAAAGATAGGCATAGCAAAGTGTGTACTATTAGGGGTTTGAGAGATAGAAGGATAAGGCTTTCAGTTCCAACAGCAATTCAACTCTATGATCTTCAAGACAAGCTTAAACTTGGGCAGCCTAGCAAGGTCATAGATTGGCTACTCGACGTCACGAAACTTGATATCGACAAGCTTCCGCCGCTCCAGATCCCGACCGGGTTGTCTCCGTTTCACCAACATATGCTCTTCCCTCAATATCATCATAATTCTAGTACTCTCCCTCTTCCTCTTCCTACTCCTCCTCCGTTTGCCTTCGACATGAAGGATCCTTCGATGATGCATATCAGAGACGTTGTGAATCAAACGACGATGATCGAGAAATCGAAGTCGAAAGGGAAGTGGATTGATGGAGGTAATGATCAAGAAGTTGAAGATTATAATGAGCAAATTATGATGAACAATTGTAATGCTTACAATTACAACACTTGTGATCATGATCATCAACATTCTTGTGGGGTTTTTCCATCACAAATTGAGGCTCAAACAAGTTCATCTTCATGTTCTTCACTTGTTTTCACTCCATATGCTTCATACATCACAAACCCATTTGAAAGCCACATCCATTTCTTGAGCTCAAATTCTCATACTTTGTCCAATCCCTTCATACCATCATCTCTCCACCCTTTTGCCTCACAAAACTTGAAACCCTTTCCTCCAAACTTCAATCTCAAGCAGCTTCTTCATGCTGGCAACAACGACGGCGGCGGCTCCGGTAAAGACGGGGCGGCGTCTGGTAGCTCATAG 936 42.95 MLRSSKEKGFGGKEEGISDEKYDMAKGSTRSRQWSGFRNPRIVRVSRSFGGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLKLGQPSKVIDWLLDVTKLDIDKLPPLQIPTGLSPFHQHMLFPQYHHNSSTLPLPLPTPPPFAFDMKDPSMMHIRDVVNQTTMIEKSKSKGKWIDGGNDQEVEDYNEQIMMNNCNAYNYNTCDHDHQHSCGVFPSQIEAQTSSSSCSSLVFTPYASYITNPFESHIHFLSSNSHTLSNPFIPSSLHPFASQNLKPFPPNFNLKQLLHAGNNDGGGSGKDGAASGSS 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1068115 1069050 + CmoCh11G002140.1 Cmo11g00214 390833

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00214 311 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 28 310 IPR005333 GO:0003700
Cmo11g00214 311 MobiDBLite consensus disorder prediction 291 311 - -
Cmo11g00214 311 ProSiteProfiles TCP domain profile. 51 109 IPR017887 -
Cmo11g00214 311 PANTHER TRANSCRIPTION FACTOR TCP5 28 310 - -
Cmo11g00214 311 MobiDBLite consensus disorder prediction 1 26 - -
Cmo11g00214 311 Pfam TCP family transcription factor 51 114 IPR017887 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00214 - - - mcha:111007241 384.8
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo11g00214 Cmo13g01114 CCT
Cmo10g00314 Cmo11g00214 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00439 Cmo-Chr1:2133762 Cmo11g00214 Cmo-Chr11:1068115 5.74E-40 dispersed
Cmo11g00214 Cmo-Chr11:1068115 Cmo14g01189 Cmo-Chr14:10009759 6.48E-42 dispersed
Cmo10g00314 Cmo-Chr10:1404121 Cmo11g00214 Cmo-Chr11:1068115 6.86E-133 wgd
Cmo11g00214 Cmo-Chr11:1068115 Cmo13g01114 Cmo-Chr13:9110094 3.65E-40 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g460 Blo04g00796 . . . Bpe12g00521 . Bma06g00019 . Cmo13g01114 . . Cma11g00212 Car10g00278 Car11g00191 Sed08g0281 Cpe20g00081 Cpe04g01456 Bhi02g00091 Tan09g2038 Cmetu07g0568 . Hepe09g0277 . . Cla06g01535 Cam06g1693 Cec06g1756 Cco06g1755 Clacu06g1661 Cmu06g1607 Cre06g2419 . . . . . Csa01g00607 Chy12g01493 Cme12g01933 . . Bda11g01762 Bda14g00885 . Bpe15g00574 Bma03g00857 Bma08g00244 Sed01g2290 Cmo10g00314 Cmo11g00214 Cma13g01069 . Car13g00905 . . Cpe18g00710 Bhi08g01077 Tan05g2351 Cmetu12g1931 Lac10g0172 Hepe07g2456 . . Cla04g01148 Cam04g1204 Cec01g1716 Cco01g1761 Clacu04g1231 Cmu04g1211 Cre01g1507 Lsi06g01407 Csa01g00299 Chy02g02437 Cme02g01824
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo15g00816 . 31 253 TCP Transcription Factor Family AT5G23280 62.2 1.3e-64 243.8
Cmo04g02347 . 36 264 TCP Transcription Factor Family AT5G23280 61.0 3.0e-64 242.7
Cmo04g01331 . 145 359 TCP Transcription Factor Family AT5G23280 61.4 1.1e-63 240.7
Cmo18g00812 . 33 230 TCP Transcription Factor Family AT5G23280 58.0 1.2e-57 220.7
Cmo17g00006 . 65 341 TCP Transcription Factor Family AT2G45680 50.5 5.0e-57 219.2
Cmo18g01183 CST 56 146 TCP Transcription Factor Family AT3G47620 92.3 5.3e-41 166.4
Cmo04g01729 CST 59 153 TCP Transcription Factor Family AT3G47620 88.7 5.8e-40 162.9
Cmo13g01176 CCT,ECH 36 134 TCP Transcription Factor Family AT3G47620 83.8 3.8e-39 160.2
Cmo04g01953 . 130 212 TCP Transcription Factor Family AT3G47620 90.4 1.7e-36 151.4
Cmo04g01953 . 130 222 TCP Transcription Factor Family AT1G69690 82.8 2.0e-36 150.6
Cmo14g00744 . 1 313 TCP Transcription Factor Family AT3G27010 55.3 1.7e-61 233.8
Cmo11g01602 . 29 272 TCP Transcription Factor Family AT3G27010 55.5 4.5e-54 209.1
Cmo17g01372 . 269 486 TCP Transcription Factor Family AT3G27010 53.2 6.4e-48 188.7
Cmo15g00816 . 1 252 TCP Transcription Factor Family AT5G08330 60.2 9.7e-65 244.2
Cmo04g02347 . 1 263 TCP Transcription Factor Family AT5G08330 56.7 9.1e-63 237.7
Cmo04g01331 . 117 357 TCP Transcription Factor Family AT5G08330 55.2 1.5e-60 230.3
Cmo18g00812 . 10 228 TCP Transcription Factor Family AT5G08330 56.2 2.3e-58 223.0
Cmo11g00214 CCT,CST 31 179 TCP Transcription Factor Family AT5G60970 56.7 2.3e-38 157.1
Cmo14g01189 . 28 139 TCP Transcription Factor Family AT3G02150 66.4 2.6e-37 153.7
Cmo11g02005 . 8 162 TCP Transcription Factor Family AT2G31070 54.3 1.7e-36 151.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006954 1 1 2 2 3 1 2 1 1 1 1 1 1 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10529 PF03634 TCP 5.60E-23 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g00214 Cmo_Chr11 FPKM 4.018895 5.048208 4.791032 5.209722 5.786222 6.504488 7.179558 5.76362 5.269758 6.390838