Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00217 ATGTATGGTCAACCAAATTATGGTTCTCAGTTCGGGCAGGGTCCTCAGAAGCCATGGCCACCTGCATACCAACAGCGTGCAGTAGCACCTCCTCCGCCTCCTCCTCCTACCTCATATATTCAACCAGGCCCTCCAATCCCATCACGTCCTATAACTCAACAACCACCGGCACCTCAACTCCAGGCTGGGCAACCTCTTCATTTGTCTCAGTCTGGTTCCCATGGTCCACCCCCACCTCCCCTTTGTCAGCGCCCATCCATTCAAGTTCTATCTGGTGGGATCACAAATATCCATCAAACATATTTTCACACGTTTCCACCAGTCCGTGGAAGCACACAAGTTTCTCAATTTAACTCAAATGCTCAGCAGAATGTACAACTTTCACACTCTGGAGTTCAGAACACGCATCACGTTCTACCTCCACCACCGCGGCTACCACCGCCGCCACCACGCCCTCTTCATGCTCCTAGTCCGGATTTAATACGGCCTCCGCAGTTTTCTACTACAGTACCTCTTCATCCTCGTTCCCAAGGACAAACATTGTATGGAGTTCGAATTAATCCACCGTTGCAACAAGGTGGTTTGCAGATCTTTCCCTCTATCCCACAACATCCCTCAACATCCAATTTTCCTACTCCCCCTTCTTTTGGAGGACTCATGCAATCAAATCTTGGAGAATCTCATTTGCTTCCAGTGGCTCCTCCGCCACCACCATCCTCTCCACCACCTATTCCACCTTCTCCCCCTCCTCCCACCTCGCCGTCTTCTTCAATTCCAAACTCAGATTCCTCCAACTTGTTGTGCCAGATTGAAGTCGATCCTAGTTCTACCATTCACTGTAGTAAAAGGTTAAAGGCATTTGAAAATGATCCAGTAGTCCCATCTCCCAGTCATTTAGGGGATAATAGGCCCAAGCATGACAAACACAGAAATTTAGAGGGTGGTATTGGCCTCATGATGGGTTCTAAAGTTGACAATGAGATATTGTCAGACAAAGATTATGTGCAGGTTCTTCCTCCATCTCCACCTAAGCCAAAAGATGATAGAATTGTCAGGAAAATAGAAGTCTTATGTCAGCTCATTGCTAGTAATGGTTCCAGTTTTGAAGACGCAACTCGTCACAAGGAATTTGGGAATCCAGAGTTTCAATTTTTATTTGGTGGTGAACCGGGAAGTGAATCTGCAATTGGCCATGAATATTTCCTGTGGATGAAGAAGAAATATAGCTTGGCTTGCAAAAATAAAGAAATGAAAGAAAAATCTCCATCGAGATCTTTAAGCATTGAACCACAATCTGAGTATTTGACAGTGTCAGCAGCATCCATTTCACCTGCAAACTCTGACATGGAGATGGGAGATGACATCACCCCAGCTGCTAGAGGAGAGGAAACTGGTCGCTTAGTTCAAATTCAAAGCTACAAGAGAAAATCAAGAAAAGAGGAGCATGATGTAAAGGATCAGTTACAAGGACCTGAAGATTTACAAAGATATGGAGGGCCGAAACTTCTGCTTGGCCATGAAAAATCTGTCAGCGTTGCAGCTTGTCAAGTTCACATTCCTGTCAGAATTTCTGCTGGACTTTCTGAACCGCCTTTAGGAAACAATTTTGAGAGTTCTGTTACGTGCTCGCAAAATGGCAAAAATCTATCTGGTGAAGTTGCAGCTTTTGAAGCCACTAATTCTAGTCAGTCTGCTGCACTTGTTGCAGGTGGCAGCCCGTTTAGACTTATACAGGACTATTCTTCGGATGAAAATTCAGAAAGCGATGAGGAATCACACCTTAAAGATGTCCGGTTTGTTGCTGCCTCACCTTCAACTCCAGTATCTTCCAAGACTTCAGACAAAGACACTGATCAACTGACTAATCTTGGATCAAAAGGTTCTTGCCAGGTTGAACTGAGTTATGCTCCAACTTGTGAATACTCCATGCCTGAATCTGGTGCTCATTTCCTCTCAGAACCACCAAAGTTGGTTTTTGATGCCAATGAGGCAAATGTCAGAAAGACAGGGAATGAACAGAGTTGCAACAACCAACGGAATCAAATTGGTACTAGCACCAGTCCTAAGTCTTTGGATGCATTGAATGGTCGTAGTGTTGATGTTGTCCAGGATACTGACAAGTTACGAAAAGAAAATGATGAGGAAAAGGTGAAGTTGGGATCATCTCCTGTAAAAATAGATGAATTTGGAAGATTAGTTAGAGAAGGTGGCAGTGATAGTGATTCAGATGATTCACTCTATATAAGGAGACATAAGAATAGAAGAGCTAGAAGTAGTAGCGAAAGTCGTTCTCCTGTCGATAGAAGGAGGGGACGAAGGAGTCCATGGAGAAGAAGGGAGAGGCGAAGCCGCTCTCGCAGTTGGTCTCCTCGTAACCAAAGAGGCAGAGGCAGAAGCAGAAGCAGAAGCAGAAGCAGGTCTCCTGTCAGCAGACGTACAAATCAATTTAATAATGAGAATATGAGACGGGATAAGGGTATGATACGGAAATGCTTTGACTTTCAGCGCGGTAGGTGCTATAGAGGAGCATCTTGTCGCTATGTGCACCATGAACCCAGCAAGAACGATGGATCAAGACTTCAAAGGAGCAAACATCATGATGTTCACCCAACTTCAAAGAATATAGGAAGTAGAGAAGACACTATGAACGCGTCTAGGGACATATCAGATCTTGGGCATATTAAAGTTGAGATTCAGGAGTGCATCCAGCATAGTGTGTCCCCAAAGCATGATGCTCATGCTTGGAATACTGATAGTCCCACTCGCGATGTGAATAGATGTCAGAGTTCTAGAGATGGAACTAGCTTAGTTGAAGAGGATTTAATAAATTCAAAACCAGCAGGGGCTGTCCACATTCATGTTAACAATAATGGTCAAGAAACAGAGAAGTCTTATGAGCAATGTTCAGTTGTGGCCTCCTCACAATGCATGAGCAATGCTGATACTGAGAAATTCTCTGGTGATATTTCCACAAGCATGCTGACTTCTGCGGAGAATTCTGTGGCTCAGCAATCCAACATGCTTGTTTCAGAGCTTCTAACTGCTAATAGCTACTCACGCCCGATGGATGGTTCTTTTGTCTCCAATTTATTACCTGATCAAGTAACTGTGCTTACCACCAATAAAGCTCCTGAGTGTGAACTTTTTCCGGATAAAACTTCATCCATCAATGAACAGTTTGATGCCAGTTCTGCTAGTCAGCCACCTACGACCTCACAATTTTTATCGGAGTCTCCAGTACCGAAACAATTTTCTGCTACTGCTCCAGGTTGTGCTAATGACGATGCCCATTCTCTTAGAGCGCTGCCTCCTCCCCCTCCTCTGCTTCCTCACATGATTTCACATGTCACTAGTGCTGAGGTTCCAATTTCTGCCCCATATAGTTTTGTGTCACAAAATGCATCTTTTCCTTCTAAATCTTCGCTGCCAGGAGATTTTCATCCTCATCAAGATTTTGTATCCATCCAACCATCTAATGACCACAGTACCCCTTTACTGCCACCGAGACGGTTGTATGATTCAGCATTGGCTCCTACAACGACCAAAGATGGTATGCCAATGCAATTTCATCAGAGTAATTTGTCTCAAGGAAGTGATCTAGGTTCTCAGTCTGTTATGAAATCCCAGCCATTGGAGTTGCATTCTCATTCAAAGATTGGTGAGTCCCCATTACAGGAGCCTTGTAGAGCTCCAATGCATATGGATGAAATTAGATCTATTACCCCAGTTGCAACCAATCGACCTAGTCTACCATTTGGATTCCCGAGCTTTTCGAACGAAGAAAACTTTGGGCGAACTTCTGTGGAGATGAATTCTTCAAGTTTTTTTCCTCGGCGAAACTTCAATGACCAATCTATGCCCTTTACAGATGCAAATAGAATGCAATTTTCTGATGACAATTTCCCTCCTAGTGAGTTTCGAAGTTCATTTTCACAGTTTCATCCTTATTCGCGGTTTCAACAGCCATTTTATGCCTCACAACCTGCTCATGATGGTTTCTTACGCGACTCAAGTCAGATTGGTACTATGTCTCGACATTATCTCGATCCTTCAATCAGGAACCATCCATCTTTGCCCCCTGATTTTCGGGGTTTGGGAGTTACCACTTATCATAATCCTTATGCGTCTACTTTTGAGAAACCACTCAGCTCCACCTACAGTTCTAACATTTTGAACTTTGGAAATGATGCACCTAGTGGTGATATACGCGATTCTACTTTCAATGCGAGCAATGCTCGAGTTGATGGGCAAGGTGCTAATTATGTTGGATCAAGACTGACAACTGCGTCACCAAACTCTACCAAACCTTTGGGGAAACTCTTGCCCAGCCCAGGTGGTGATCAGTATGATCCACTCTTTGACAGCATGGAGCCATCATCACCTATAATTAAGAAATCCGATCGTGGTCAAAAGCTGGAAAAAACAAGAGAATCTCATATGACGACAAGACTTGGTAGTTCCCATAAATTACTAGATGTGGAGGAGAACAACAAGCATAAGGAAGTTGTTGCTGTGGCTTCAACTACTTCGCTAGATAATGATGAATTTGGGGAGACAGCTGATGCAGAAGCTGGTGCTGTTGAGGATGACTTTGATGATGAAGCAAACTTATCAGGAGAGATTGAAATTGATCAGGTTAAGTCCTCCGAGAAGAGCAAGAAATCCAAAGGTTCTAGGTCCCTTAGGCTTTTCAGGATTGCTATTGCCGATTTTGTTAAGGAAATTCTAAAACCGTCATGGAGACAGGGCAACATGAGCAAAGAAGCTTTTAAGACAATCGTCAAAAAGACTGTTGACAAGGTATCTGGAGCTATGAAGAGTCACCAAATACCCAAGTCTCAAGCAAAGATAAATCGATACATTGATTCATCACAGCAAAAACTTACCAAGCTTGTTATGGGTTATGTTGACAAGTACGTTAAGTCATAG 4929 43.66 MYGQPNYGSQFGQGPQKPWPPAYQQRAVAPPPPPPPTSYIQPGPPIPSRPITQQPPAPQLQAGQPLHLSQSGSHGPPPPPLCQRPSIQVLSGGITNIHQTYFHTFPPVRGSTQVSQFNSNAQQNVQLSHSGVQNTHHVLPPPPRLPPPPPRPLHAPSPDLIRPPQFSTTVPLHPRSQGQTLYGVRINPPLQQGGLQIFPSIPQHPSTSNFPTPPSFGGLMQSNLGESHLLPVAPPPPPSSPPPIPPSPPPPTSPSSSIPNSDSSNLLCQIEVDPSSTIHCSKRLKAFENDPVVPSPSHLGDNRPKHDKHRNLEGGIGLMMGSKVDNEILSDKDYVQVLPPSPPKPKDDRIVRKIEVLCQLIASNGSSFEDATRHKEFGNPEFQFLFGGEPGSESAIGHEYFLWMKKKYSLACKNKEMKEKSPSRSLSIEPQSEYLTVSAASISPANSDMEMGDDITPAARGEETGRLVQIQSYKRKSRKEEHDVKDQLQGPEDLQRYGGPKLLLGHEKSVSVAACQVHIPVRISAGLSEPPLGNNFESSVTCSQNGKNLSGEVAAFEATNSSQSAALVAGGSPFRLIQDYSSDENSESDEESHLKDVRFVAASPSTPVSSKTSDKDTDQLTNLGSKGSCQVELSYAPTCEYSMPESGAHFLSEPPKLVFDANEANVRKTGNEQSCNNQRNQIGTSTSPKSLDALNGRSVDVVQDTDKLRKENDEEKVKLGSSPVKIDEFGRLVREGGSDSDSDDSLYIRRHKNRRARSSSESRSPVDRRRGRRSPWRRRERRSRSRSWSPRNQRGRGRSRSRSRSRSPVSRRTNQFNNENMRRDKGMIRKCFDFQRGRCYRGASCRYVHHEPSKNDGSRLQRSKHHDVHPTSKNIGSREDTMNASRDISDLGHIKVEIQECIQHSVSPKHDAHAWNTDSPTRDVNRCQSSRDGTSLVEEDLINSKPAGAVHIHVNNNGQETEKSYEQCSVVASSQCMSNADTEKFSGDISTSMLTSAENSVAQQSNMLVSELLTANSYSRPMDGSFVSNLLPDQVTVLTTNKAPECELFPDKTSSINEQFDASSASQPPTTSQFLSESPVPKQFSATAPGCANDDAHSLRALPPPPPLLPHMISHVTSAEVPISAPYSFVSQNASFPSKSSLPGDFHPHQDFVSIQPSNDHSTPLLPPRRLYDSALAPTTTKDGMPMQFHQSNLSQGSDLGSQSVMKSQPLELHSHSKIGESPLQEPCRAPMHMDEIRSITPVATNRPSLPFGFPSFSNEENFGRTSVEMNSSSFFPRRNFNDQSMPFTDANRMQFSDDNFPPSEFRSSFSQFHPYSRFQQPFYASQPAHDGFLRDSSQIGTMSRHYLDPSIRNHPSLPPDFRGLGVTTYHNPYASTFEKPLSSTYSSNILNFGNDAPSGDIRDSTFNASNARVDGQGANYVGSRLTTASPNSTKPLGKLLPSPGGDQYDPLFDSMEPSSPIIKKSDRGQKLEKTRESHMTTRLGSSHKLLDVEENNKHKEVVAVASTTSLDNDEFGETADAEAGAVEDDFDDEANLSGEIEIDQVKSSEKSKKSKGSRSLRLFRIAIADFVKEILKPSWRQGNMSKEAFKTIVKKTVDKVSGAMKSHQIPKSQAKINRYIDSSQQKLTKLVMGYVDKYVKS 1642
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1086198 1094862 - CmoCh11G002170.1 Cmo11g00217 390836

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00217 1642 MobiDBLite consensus disorder prediction 603 624 - -
Cmo11g00217 1642 Pfam Surp module 354 404 IPR000061 GO:0003723|GO:0006396
Cmo11g00217 1642 MobiDBLite consensus disorder prediction 1464 1483 - -
Cmo11g00217 1642 MobiDBLite consensus disorder prediction 770 807 - -
Cmo11g00217 1642 MobiDBLite consensus disorder prediction 848 874 - -
Cmo11g00217 1642 SUPERFAMILY Surp module (SWAP domain) 332 408 IPR035967 GO:0003723|GO:0006396
Cmo11g00217 1642 MobiDBLite consensus disorder prediction 55 71 - -
Cmo11g00217 1642 MobiDBLite consensus disorder prediction 909 931 - -
Cmo11g00217 1642 MobiDBLite consensus disorder prediction 230 256 - -
Cmo11g00217 1642 MobiDBLite consensus disorder prediction 1059 1083 - -
Cmo11g00217 1642 PANTHER EXPRESSED PROTEIN 1 1641 - -
Cmo11g00217 1642 MobiDBLite consensus disorder prediction 130 175 - -
Cmo11g00217 1642 MobiDBLite consensus disorder prediction 602 624 - -
Cmo11g00217 1642 Gene3D Surp module 350 410 IPR035967 GO:0003723|GO:0006396
Cmo11g00217 1642 MobiDBLite consensus disorder prediction 1457 1483 - -
Cmo11g00217 1642 MobiDBLite consensus disorder prediction 193 264 - -
Cmo11g00217 1642 MobiDBLite consensus disorder prediction 848 883 - -
Cmo11g00217 1642 ProSiteProfiles Zinc finger C3H1-type profile. 830 852 IPR000571 GO:0046872
Cmo11g00217 1642 MobiDBLite consensus disorder prediction 1 86 - -
Cmo11g00217 1642 MobiDBLite consensus disorder prediction 473 490 - -
Cmo11g00217 1642 MobiDBLite consensus disorder prediction 734 822 - -
Cmo11g00217 1642 MobiDBLite consensus disorder prediction 139 159 - -
Cmo11g00217 1642 ProSiteProfiles SURP motif repeat profile. 353 401 IPR000061 GO:0003723|GO:0006396
Cmo11g00217 1642 MobiDBLite consensus disorder prediction 454 493 - -
Cmo11g00217 1642 PRINTS Proline rich extensin signature 13 29 - -
Cmo11g00217 1642 PRINTS Proline rich extensin signature 33 45 - -
Cmo11g00217 1642 PRINTS Proline rich extensin signature 139 156 - -
Cmo11g00217 1642 PRINTS Proline rich extensin signature 234 259 - -
Cmo11g00217 1642 MobiDBLite consensus disorder prediction 669 693 - -
Cmo11g00217 1642 MobiDBLite consensus disorder prediction 1059 1092 - -
Cmo11g00217 1642 MobiDBLite consensus disorder prediction 669 697 - -
Cmo11g00217 1642 MobiDBLite consensus disorder prediction 734 750 - -
Cmo11g00217 1642 MobiDBLite consensus disorder prediction 910 931 - -
Cmo11g00217 1642 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 1 1641 - -
Cmo11g00217 1642 MobiDBLite consensus disorder prediction 289 308 - -
Cmo11g00217 1642 MobiDBLite consensus disorder prediction 193 222 - -
Cmo11g00217 1642 MobiDBLite consensus disorder prediction 24 54 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00217 - - - mcha:111007314 2264.96
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo10g00311 Cmo11g00217 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00224 Cmo-Chr7:1127425 Cmo11g00217 Cmo-Chr11:1086198 5.76E-17 dispersed
Cmo07g00818 Cmo-Chr7:3790363 Cmo11g00217 Cmo-Chr11:1086198 4.06E-19 dispersed
Cmo10g00311 Cmo-Chr10:1386219 Cmo11g00217 Cmo-Chr11:1086198 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g457 Blo04g00798 . . . . . . . . . . Cma11g00215 Car10g00275 Car11g00194 Sed12g2017 . Cpe04g01453 Bhi02g00087 Tan09g2029 Cmetu02g1493 . Hepe09g0282 . . . . . . . . . Cone2ag0794 Cone16ag0215 . . . . . . . . . Bda14g00888 . Bpe15g00571 . . . Cmo10g00311 Cmo11g00217 . . . . . . . . . . . . . . . . . . . . . Csa01g00305 Chy02g02433 Cme02g01821
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009616 1 1 0 0 1 1 2 1 1 1 1 1 2 2 1 2 1 0 2 1 1 1 1 1 1 1 1 1 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g00217 Cmo_Chr11 FPKM 19.157862 20.276232 19.479145 19.458387 31.659195 33.566593 35.421284 21.802643 22.693459 22.881231