Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00221 ATGAGGTCTCGGCTCTTCTCTTCCACTGGATCCGTCGCCGAACTTACTGGCTTTGGCATCTTGCTTCTCTTTCTACTTTCATGCTTCAGTTTCACTTCGACAGAAGCCTATGATGCACTTGATCCCAACGGGAACATCACCATCAAATGGGATGTTATGAGCTGGACTCCGGATGGCTATGTTGCTGTTGTTACAATGTACAACTTCCAGCAATACCGCCATATTCAAGCTCCAGGTTGGACACTGGGCTGGACATGGGCAAAGAAAGAAGTGATTTGGAGCATGATGGGAGCCCAAACAACGGAACAGGGAGACTGTTCAAGGTTCAAAGGAAATACTCCACATTGCTGCAAGAAAGATCCAACCGTTGTGGATCTATTGCCAGGAACTCCTTACAATCAGCAGATTGCAAATTGTTGCAAGGGTGGAGTGATAAACTCCTGGGCCCAAGACCCAGCCAATGCAGCAAGCTCATTTCAAGTCAGTGTTGGTGCTGCAGGAACGAGTAACAAAACTGTCAAACTCCCCAAAAACTTCACTCTTAAAGCACCGGGACCTGGATATACTTGTGGTCCAGCAAAGATTGTGAAGTCAACCAAATTTATATCTGGAGATAAAAGAAGAGTAACTCAAGCTTTGATGACTTGGAATGTTACATGCACCTATTCTCAATTCCTTGCTCAGAAGACACCCACTTGTTGTGTTTCCCTCTCTTCCTTCTACAATGATACCATCGTCAACTGCCCAACCTGCACTTGTGGATGTCAAAACAATACGGCAGGTTCTGGGAGCTGTGTGAATCCAGATTCTCCACATTTAGCTTCAGTGGTATCAACTCCTGATAAATCGGGCAACTATGAACCCCTGGTTCAGTGTACTAGCCACATGTGTCCCATTCGAGTCCATTGGCATGTGAAGCTGAATTACAAGGACTATTGGAGGGTGAAGATCACAATCACCAATTTCAATTACAGAATGAACTACACACTCTGGAATCTTGTGGCGCAGCATCCCAATTTTGATAACATAACTCAATTATTCAGCTTTAACTACAAGTCGTTGAGCCCCTATGGTGACCTAAATGATACTGCTATGTTATGGGGAGTTAAGTTCTACAATGATCTGCTCAATCAAGCTGGCCCTCTTGGTAATGTGCAGTCTGAGCTCCTATTCCGGAAAGACCAAAACACTTTCACTTTCGACAAGGGTTGGGCTTTTCCAAGAAGAGTTTATTTCAATGGTGATAACTGTGTGATGCCACCTCCAGAGGCCTATCCCTATTTGCCAAATGCCAGTTCCAGACCAGCTATGTCTTTACTTGCGACAGTGTTAATATCTCTGGCATTACTGTTGAATTTTGCTCTCTAA 1368 44.52 MRSRLFSSTGSVAELTGFGILLLFLLSCFSFTSTEAYDALDPNGNITIKWDVMSWTPDGYVAVVTMYNFQQYRHIQAPGWTLGWTWAKKEVIWSMMGAQTTEQGDCSRFKGNTPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVINSWAQDPANAASSFQVSVGAAGTSNKTVKLPKNFTLKAPGPGYTCGPAKIVKSTKFISGDKRRVTQALMTWNVTCTYSQFLAQKTPTCCVSLSSFYNDTIVNCPTCTCGCQNNTAGSGSCVNPDSPHLASVVSTPDKSGNYEPLVQCTSHMCPIRVHWHVKLNYKDYWRVKITITNFNYRMNYTLWNLVAQHPNFDNITQLFSFNYKSLSPYGDLNDTAMLWGVKFYNDLLNQAGPLGNVQSELLFRKDQNTFTFDKGWAFPRRVYFNGDNCVMPPPEAYPYLPNASSRPAMSLLATVLISLALLLNFAL 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1105614 1108526 + CmoCh11G002210.1 Cmo11g00221 390840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00221 455 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 28 - -
Cmo11g00221 455 Pfam COBRA-like protein 60 223 IPR006918 GO:0010215|GO:0031225
Cmo11g00221 455 PANTHER PROTEIN COBRA 11 451 IPR006918 GO:0010215|GO:0031225
Cmo11g00221 455 PANTHER COBRA-LIKE PROTEIN 11 451 - -
Cmo11g00221 455 PIRSF COBRA 10 455 IPR006918 GO:0010215|GO:0031225
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo11g00221 Cmo13g01107 CCT
Cmo11g00221 Cmo13g01107 ECH
Cmo10g00308 Cmo11g00221 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00448 Cmo-Chr1:2161265 Cmo11g00221 Cmo-Chr11:1105614 0 dispersed
Cmo04g00577 Cmo-Chr4:2880815 Cmo11g00221 Cmo-Chr11:1105614 1.69E-166 dispersed
Cmo10g00308 Cmo-Chr10:1369816 Cmo11g00221 Cmo-Chr11:1105614 0 dispersed
Cmo11g00221 Cmo-Chr11:1105614 Cmo14g01186 Cmo-Chr14:9952375 0 dispersed
Cmo11g00221 Cmo-Chr11:1105614 Cmo11g00223 Cmo-Chr11:1109123 0 proximal
Cmo19g00732 Cmo-Chr19:7566939 Cmo11g00221 Cmo-Chr11:1105614 1.33E-90 transposed
Cmo10g00306 Cmo-Chr10:1366269 Cmo11g00221 Cmo-Chr11:1105614 0 wgd
Cmo11g00221 Cmo-Chr11:1105614 Cmo13g01107 Cmo-Chr13:9067595 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00221 - - csv:101213424 885.56