Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo11g00231 | ATGCAGGGCATACACTCGATTGGTGGCGGAAGCCGCTTGTTTGGCGGCGGAGGCGGTGGCGGCGGGGACCGTAGCCTGAGGCCCCACCTCCACCACCACCACCAGAACCACCAAGCCTTGAAGTGCCCAAGGTGTGATTCTCTCAATACAAAGTTCTGTTATTACAATAACTATAATCTCTCTCAGCCTCGTCACTTCTGCAAGAGCTGCCGCCGTTACTGGACCAAAGGCGGCGTCCTACGCAACGTTCCTGTCGGTGGTGGCTGTCGGAAAACCAAACGAGCTTCCAAGTCCAAGCCGACATCTGACACAACCGGGCCTCCACCTCCACTTCACGAACAGAAATCCACCTCTCATTCTAGCAGCGAGAGCTCTAGTCTCACCGCCGCAACAACAACCGCCGCCGCCGCAACCGAGGCTGTTTCCGCTCCATCTACGAGTTCCGCGTCGACTCTATTAAGCGTACAGGATTCGAAATTGTTCCCCAATCCTAGTATAAACACGAATTTCGAGATGGCGGCAGCTCCAGTTTCGGACTGCGGAATTTTCTCGGAAATCGGAAGCTTCACGAGCTTGATCACGTCGTCGAACGAGACATTGCCGTTCGGATTCGGCAACATCGCTGACGCGACGCCTTTCGCGATGAATCATCAGTTACAAAATCAATGGACGCCACAGAGAATGATGAACGTTAACGACGAACTAAAGATGCAGGAAATCACAGGCGGCGGCGGCGGGTACATGGATCAGACGGCCCACGTCGATCCATCAGGGCTGCAGAATAGCAGATCAAGTAACATTGGATTCGGACCGTTGGATTGGCAATCAAACGGAGATCATCAGGTTCTTTTTGATCTTCCCAACGCCGTTGATCAAGCATACTGGAGTCAAAATCAATGGAGTGATCCAGACCCCCCCAATCTGTACCTTCCGTAA | 936 | 53.21 | MQGIHSIGGGSRLFGGGGGGGGDRSLRPHLHHHHQNHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRASKSKPTSDTTGPPPPLHEQKSTSHSSSESSSLTAATTTAAAATEAVSAPSTSSASTLLSVQDSKLFPNPSINTNFEMAAAPVSDCGIFSEIGSFTSLITSSNETLPFGFGNIADATPFAMNHQLQNQWTPQRMMNVNDELKMQEITGGGGGYMDQTAHVDPSGLQNSRSSNIGFGPLDWQSNGDHQVLFDLPNAVDQAYWSQNQWSDPDPPNLYLP | 311 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 1149128 | 1150063 | - | CmoCh11G002310.1 | Cmo11g00231 | 390850 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo11g00231 | 311 | MobiDBLite | consensus disorder prediction | 85 | 133 | - | - | |
Cmo11g00231 | 311 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
Cmo11g00231 | 311 | MobiDBLite | consensus disorder prediction | 108 | 133 | - | - | |
Cmo11g00231 | 311 | Pfam | Dof domain, zinc finger | 38 | 94 | IPR003851 | GO:0003677|GO:0006355 | |
Cmo11g00231 | 311 | ProSitePatterns | Zinc finger Dof-type signature. | 42 | 78 | IPR003851 | GO:0003677|GO:0006355 | |
Cmo11g00231 | 311 | PANTHER | DOF ZINC FINGER PROTEIN 4 | 17 | 299 | - | - | |
Cmo11g00231 | 311 | ProSiteProfiles | Zinc finger Dof-type profile. | 40 | 94 | IPR003851 | GO:0003677|GO:0006355 | |
Cmo11g00231 | 311 | PANTHER | DOF ZINC FINGER PROTEIN DOF1.4-RELATED | 17 | 299 | IPR045174 | GO:0003700|GO:0006355 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo11g00231 | Cmo13g00918 | CCT | |
Cmo10g00299 | Cmo11g00231 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo07g00231 | Cmo-Chr7:1157272 | Cmo11g00231 | Cmo-Chr11:1149128 | 2.61E-32 | dispersed | |
Cmo11g00231 | Cmo-Chr11:1149128 | Cmo03g00889 | Cmo-Chr3:6900423 | 2.20E-33 | dispersed | |
Cmo10g00299 | Cmo-Chr10:1338892 | Cmo11g00231 | Cmo-Chr11:1149128 | 1.25E-134 | wgd | |
Cmo11g00231 | Cmo-Chr11:1149128 | Cmo13g01100 | Cmo-Chr13:9041440 | 2.01E-28 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10531 | PF02701 | zf-Dof | 3.80E-33 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo11g00231 | - | - | cmax:111469312 | 537.724 |