Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00231 ATGCAGGGCATACACTCGATTGGTGGCGGAAGCCGCTTGTTTGGCGGCGGAGGCGGTGGCGGCGGGGACCGTAGCCTGAGGCCCCACCTCCACCACCACCACCAGAACCACCAAGCCTTGAAGTGCCCAAGGTGTGATTCTCTCAATACAAAGTTCTGTTATTACAATAACTATAATCTCTCTCAGCCTCGTCACTTCTGCAAGAGCTGCCGCCGTTACTGGACCAAAGGCGGCGTCCTACGCAACGTTCCTGTCGGTGGTGGCTGTCGGAAAACCAAACGAGCTTCCAAGTCCAAGCCGACATCTGACACAACCGGGCCTCCACCTCCACTTCACGAACAGAAATCCACCTCTCATTCTAGCAGCGAGAGCTCTAGTCTCACCGCCGCAACAACAACCGCCGCCGCCGCAACCGAGGCTGTTTCCGCTCCATCTACGAGTTCCGCGTCGACTCTATTAAGCGTACAGGATTCGAAATTGTTCCCCAATCCTAGTATAAACACGAATTTCGAGATGGCGGCAGCTCCAGTTTCGGACTGCGGAATTTTCTCGGAAATCGGAAGCTTCACGAGCTTGATCACGTCGTCGAACGAGACATTGCCGTTCGGATTCGGCAACATCGCTGACGCGACGCCTTTCGCGATGAATCATCAGTTACAAAATCAATGGACGCCACAGAGAATGATGAACGTTAACGACGAACTAAAGATGCAGGAAATCACAGGCGGCGGCGGCGGGTACATGGATCAGACGGCCCACGTCGATCCATCAGGGCTGCAGAATAGCAGATCAAGTAACATTGGATTCGGACCGTTGGATTGGCAATCAAACGGAGATCATCAGGTTCTTTTTGATCTTCCCAACGCCGTTGATCAAGCATACTGGAGTCAAAATCAATGGAGTGATCCAGACCCCCCCAATCTGTACCTTCCGTAA 936 53.21 MQGIHSIGGGSRLFGGGGGGGGDRSLRPHLHHHHQNHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRASKSKPTSDTTGPPPPLHEQKSTSHSSSESSSLTAATTTAAAATEAVSAPSTSSASTLLSVQDSKLFPNPSINTNFEMAAAPVSDCGIFSEIGSFTSLITSSNETLPFGFGNIADATPFAMNHQLQNQWTPQRMMNVNDELKMQEITGGGGGYMDQTAHVDPSGLQNSRSSNIGFGPLDWQSNGDHQVLFDLPNAVDQAYWSQNQWSDPDPPNLYLP 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1149128 1150063 - CmoCh11G002310.1 Cmo11g00231 390850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00231 311 MobiDBLite consensus disorder prediction 85 133 - -
Cmo11g00231 311 MobiDBLite consensus disorder prediction 1 32 - -
Cmo11g00231 311 MobiDBLite consensus disorder prediction 108 133 - -
Cmo11g00231 311 Pfam Dof domain, zinc finger 38 94 IPR003851 GO:0003677|GO:0006355
Cmo11g00231 311 ProSitePatterns Zinc finger Dof-type signature. 42 78 IPR003851 GO:0003677|GO:0006355
Cmo11g00231 311 PANTHER DOF ZINC FINGER PROTEIN 4 17 299 - -
Cmo11g00231 311 ProSiteProfiles Zinc finger Dof-type profile. 40 94 IPR003851 GO:0003677|GO:0006355
Cmo11g00231 311 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 17 299 IPR045174 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo11g00231 Cmo13g00918 CCT
Cmo10g00299 Cmo11g00231 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00231 Cmo-Chr7:1157272 Cmo11g00231 Cmo-Chr11:1149128 2.61E-32 dispersed
Cmo11g00231 Cmo-Chr11:1149128 Cmo03g00889 Cmo-Chr3:6900423 2.20E-33 dispersed
Cmo10g00299 Cmo-Chr10:1338892 Cmo11g00231 Cmo-Chr11:1149128 1.25E-134 wgd
Cmo11g00231 Cmo-Chr11:1149128 Cmo13g01100 Cmo-Chr13:9041440 2.01E-28 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10531 PF02701 zf-Dof 3.80E-33 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00231 - - cmax:111469312 537.724