Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00231 ATGCAGGGCATACACTCGATTGGTGGCGGAAGCCGCTTGTTTGGCGGCGGAGGCGGTGGCGGCGGGGACCGTAGCCTGAGGCCCCACCTCCACCACCACCACCAGAACCACCAAGCCTTGAAGTGCCCAAGGTGTGATTCTCTCAATACAAAGTTCTGTTATTACAATAACTATAATCTCTCTCAGCCTCGTCACTTCTGCAAGAGCTGCCGCCGTTACTGGACCAAAGGCGGCGTCCTACGCAACGTTCCTGTCGGTGGTGGCTGTCGGAAAACCAAACGAGCTTCCAAGTCCAAGCCGACATCTGACACAACCGGGCCTCCACCTCCACTTCACGAACAGAAATCCACCTCTCATTCTAGCAGCGAGAGCTCTAGTCTCACCGCCGCAACAACAACCGCCGCCGCCGCAACCGAGGCTGTTTCCGCTCCATCTACGAGTTCCGCGTCGACTCTATTAAGCGTACAGGATTCGAAATTGTTCCCCAATCCTAGTATAAACACGAATTTCGAGATGGCGGCAGCTCCAGTTTCGGACTGCGGAATTTTCTCGGAAATCGGAAGCTTCACGAGCTTGATCACGTCGTCGAACGAGACATTGCCGTTCGGATTCGGCAACATCGCTGACGCGACGCCTTTCGCGATGAATCATCAGTTACAAAATCAATGGACGCCACAGAGAATGATGAACGTTAACGACGAACTAAAGATGCAGGAAATCACAGGCGGCGGCGGCGGGTACATGGATCAGACGGCCCACGTCGATCCATCAGGGCTGCAGAATAGCAGATCAAGTAACATTGGATTCGGACCGTTGGATTGGCAATCAAACGGAGATCATCAGGTTCTTTTTGATCTTCCCAACGCCGTTGATCAAGCATACTGGAGTCAAAATCAATGGAGTGATCCAGACCCCCCCAATCTGTACCTTCCGTAA 936 53.21 MQGIHSIGGGSRLFGGGGGGGGDRSLRPHLHHHHQNHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRASKSKPTSDTTGPPPPLHEQKSTSHSSSESSSLTAATTTAAAATEAVSAPSTSSASTLLSVQDSKLFPNPSINTNFEMAAAPVSDCGIFSEIGSFTSLITSSNETLPFGFGNIADATPFAMNHQLQNQWTPQRMMNVNDELKMQEITGGGGGYMDQTAHVDPSGLQNSRSSNIGFGPLDWQSNGDHQVLFDLPNAVDQAYWSQNQWSDPDPPNLYLP 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1149128 1150063 - CmoCh11G002310.1 Cmo11g00231 390850

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00231 311 MobiDBLite consensus disorder prediction 85 133 - -
Cmo11g00231 311 MobiDBLite consensus disorder prediction 1 32 - -
Cmo11g00231 311 MobiDBLite consensus disorder prediction 108 133 - -
Cmo11g00231 311 Pfam Dof domain, zinc finger 38 94 IPR003851 GO:0003677|GO:0006355
Cmo11g00231 311 ProSitePatterns Zinc finger Dof-type signature. 42 78 IPR003851 GO:0003677|GO:0006355
Cmo11g00231 311 PANTHER DOF ZINC FINGER PROTEIN 4 17 299 - -
Cmo11g00231 311 ProSiteProfiles Zinc finger Dof-type profile. 40 94 IPR003851 GO:0003677|GO:0006355
Cmo11g00231 311 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 17 299 IPR045174 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00231 - - - cmax:111469312 537.724
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo11g00231 Cmo13g00918 CCT
Cmo10g00299 Cmo11g00231 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00231 Cmo-Chr7:1157272 Cmo11g00231 Cmo-Chr11:1149128 2.61E-32 dispersed
Cmo11g00231 Cmo-Chr11:1149128 Cmo03g00889 Cmo-Chr3:6900423 2.20E-33 dispersed
Cmo10g00299 Cmo-Chr10:1338892 Cmo11g00231 Cmo-Chr11:1149128 1.25E-134 wgd
Cmo11g00231 Cmo-Chr11:1149128 Cmo13g01100 Cmo-Chr13:9041440 2.01E-28 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g423 . Blo16g00241 . Bda15g00634 Bpe12g00514 . Bma06g00234 Bma12g01019 Cmo13g00918 . Cma10g00281 Cma11g00228 Car10g00264 Car11g00205 Sed08g0300 Cpe20g00241 Cpe04g01443 Bhi02g00056 Tan09g2004 Cmetu02g1182 . Hepe09g0293 . . Cla06g01522 Cam06g1679 Cec06g1740 Cco06g1737 Clacu06g1644 Cmu06g1592 Cre06g2403 Cone2ag0789 . Cone13ag0023 Cone19ag0032 Lsi02g00370 Csa01g00849 . Cme12g01696 Blo13g00035 . Bda11g01633 . . Bpe15g00563 Bma03g00870 Bma08g00252 . Cmo10g00299 Cmo11g00231 Cma13g00889 . Car13g00729 Car18g00159 . Cpe18g00719 . . . . . . . . . . . . . . Lsi06g01388 Csa01g00332 Chy02g02411 Cme02g01804
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo13g00632 CCT,CST 16 169 C2C2-Dof Transcription Factor Family AT1G29160 57.2 6.3e-45 177.9
Cmo18g00391 CCT,CST 11 155 C2C2-Dof Transcription Factor Family AT1G29160 52.9 3.2e-41 165.6
Cmo03g01322 CCT,CST 11 161 C2C2-Dof Transcription Factor Family AT1G29160 52.4 4.6e-40 161.8
Cmo07g00184 CCT,CST 11 162 C2C2-Dof Transcription Factor Family AT1G29160 53.8 4.6e-40 161.8
Cmo15g01373 CST 1 96 C2C2-Dof Transcription Factor Family AT1G64620 72.5 2.7e-39 160.2
Cmo13g00632 CCT,CST 16 169 C2C2-Dof Transcription Factor Family AT2G34140 56.2 6.1e-45 177.9
Cmo18g00391 CCT,CST 11 155 C2C2-Dof Transcription Factor Family AT2G34140 52.4 1.4e-41 166.8
Cmo03g01322 CCT,CST 11 161 C2C2-Dof Transcription Factor Family AT2G34140 51.8 5.5e-38 154.8
Cmo07g00184 CCT,CST 11 162 C2C2-Dof Transcription Factor Family AT2G34140 50.9 2.7e-37 152.5
Cmo04g02761 . 1 133 C2C2-Dof Transcription Factor Family AT2G37590 65.2 5.1e-40 162.5
Cmo14g00147 CCT,CST,ECH 1 132 C2C2-Dof Transcription Factor Family AT2G37590 64.5 2.2e-38 157.1
Cmo06g00304 CCT,CST,ECH 1 127 C2C2-Dof Transcription Factor Family AT2G37590 64.8 4.8e-38 156.0
Cmo01g00618 . 1 129 C2C2-Dof Transcription Factor Family AT2G37590 58.0 4.1e-37 152.9
Cmo13g00132 CCT,ECH 30 104 C2C2-Dof Transcription Factor Family AT2G37590 89.3 2.0e-36 150.6
Cmo15g01373 CST 1 94 C2C2-Dof Transcription Factor Family AT4G24060 73.1 1.5e-39 161.0
Cmo01g00618 . 1 129 C2C2-Dof Transcription Factor Family AT5G02460 57.6 6.2e-40 162.5
Cmo13g00132 CCT,ECH 23 104 C2C2-Dof Transcription Factor Family AT5G02460 86.6 4.4e-38 156.4
Cmo15g00409 . 1 125 C2C2-Dof Transcription Factor Family AT5G02460 57.8 1.3e-37 154.8
Cmo03g00443 CCT,ECH 43 116 C2C2-Dof Transcription Factor Family AT5G02460 86.5 2.4e-36 150.6
Cmo03g00443 CCT,ECH 19 138 C2C2-Dof Transcription Factor Family AT3G55370 62.8 5.9e-37 152.5
Cmo13g00132 CCT,ECH 19 157 C2C2-Dof Transcription Factor Family AT3G55370 51.6 2.2e-36 150.6
Cmo11g00231 CCT,CST 26 311 C2C2-Dof Transcription Factor Family AT5G60850 53.2 3.9e-50 196.1
Cmo10g00299 CCT,CST 26 320 C2C2-Dof Transcription Factor Family AT5G60850 54.0 1.1e-47 188.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004522 2 1 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10531 PF02701 zf-Dof 3.80E-33 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g00231 Cmo_Chr11 FPKM 13.145391 12.029487 3.908081 2.388566 10.955156 6.661107 13.19733 0.0 1.285089 1.240897