Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00238 ATGGCGAAGCTGCTTCCATGTCTTCAAGCTCCCCATCTGGTTTCTTCCATCAATCGGGGAACCCTTTCTTTCATTCTCTCCAAACCAATTCCGTTTCGCTCTTCTTCTTCGTCTTCCTTCTTACAATGTCGCTTCGCTTTCGCTCTTTCTCCTTCTCCTGCCTCACGCCGCTGCCTCTCTGTTCGAGCATTCGAAGACTCTGCATCGGAGACCAAGCGCCTGGATAGAGAAGAAGCAGATGCTGCAAACGAGGTTCCGATGAACAGTGAAGGCGGGAGAGCTCGCGATGAGGATTATCCAAGCGGAGAATTCGAATTCGAGAAGTTTGGCCCGTGGAGGAGCTTTTTGGTGAAGCTTAAGATGCTGGTTGCCTTTCCTTGGGAGCGCGTTCGTAAGGGCAGTGTCTTGACTATGAAATTGCGAGGACAGATATCTGATCAGCTAAAGAGCCGTTTCTCTTCAGGGCTTTCTCTACCTCAAATCTGCGAGAACTTTGTCAAAGCCGCGTATGATCCTCGTATATCTGGGATCTATTTGCAAATTGAAGCTCTAAATTGTGGGTGGGGTAAAGTTGAAGAACTTCGAAGGCATATCCTGAATTTCAAAAAATCAGGTAAATTTATTGTTGCCTATATTCCTACATGTCAAGAGAAAGAATACTACCTGGCATGTGCATGTGAGGAGATATATGCCCCCCCAAGTGCTTATGTTTCATTGTTCGGCTTGACTGTTCAAGCTTCATTTCTCAGAGGTATTTTTGATAAAATAGGGATTGAACCACAAGTGGAGAGGATAGGTAAATATAAAAGTGCTGGTGATCAACTAGCACGGAGAAATATGTCGGAGGAAAATTGTGAAATGTTGACGACCTTGCTTGATAATATCTATGACAACTGGCTGGATAAAATTTCTTCAATAAAAGGAAAGAAAAAAGAAGATATTGAAAGCTTTATTAATGAAGGAGTGTACCAAATTGAAAGACTAAAAGAAGATGGCTGGATCACCAACATACAGTACGAGGACGAGATTCTCTCTATGCTAAATGAAAGACTTGGACTGCCGAAGGATAAAAAAGTTCCCATGGTTGATTACAGGAAGTACTCTAAAGTTCGGCAATCAACCGTTGGTTTATCAGGAGGTGGAGACCAAATAGCTGTGATTAGAGCTGGAGGAAGCATTAGTCGTGTGAAAAGTCCTTTAAGTGTTCCTAGTTCTGGTATTATTGGGGAGCAATTCATTGAGAAGATTCGGAGTGTTCGAGAGTCGAAAAAATTCAAGGCTGCCATCATCAGAATTGACAGTCCTGGAGGTGATGCTCTTGCTTCTGATTTGATGTGGAGAGAAATCAGACTTCTGGCTGCATCAAAACCTGTCGTTGCATCCATGGCTGATGTTGCAGCCAGTGGAGGATACTATATGGCAATGGCAGCTGGGACCATTGTTGCAGAAAATCTAACCTTAACTGGTTCTATTGGAGTTGTCACAGGGAAGTTTAACTTGGGGAAACTATATGAAAAGATTGGCTTTAACAAGGAAATCATATCAAGGGGAAGATTTGCTGAGCTTCTTGCGGCAGAACAACGACCTTTCAGACCAGATGAAGCAGAACTCTTTGCCAAGTCTGCACAAAATGCGTACAAGCAATTCCGTGACAAAGCAGCCTTTTCCAGATCCATGACTGTGGATGAGATGGAGAAAGTTGCGCAAGGAAGGGTTTGGACTGGTAAACTTGCAGCATCCCATGGTTTAGTGGATGCTATCGGTGGATTTTCTCGGGCTGTTGCTATAGCAAAACAGAAAGCCAACATTCCTCAAGACAGCAAGGTTAATCTTGTGGAATTATCGAGACCGTCGCCAACGCTACTGGAGGTAGTAAGCGGAGTAGGGAGTACAATTATTGGAGTTGAGGGGACAGTGAAAGAACTGCTGCAAGACCTTGCTTTGTCAGAAGGAGTTCAAGCTCGGATGGAAGGGATTATGCTGCAGAGAATGGAGGGATTTGCTTATGGCAACTCCGTCTTTGGTTTGATAAAAGATTACCTCAGTTTCCTCTAA 2055 43.94 MAKLLPCLQAPHLVSSINRGTLSFILSKPIPFRSSSSSSFLQCRFAFALSPSPASRRCLSVRAFEDSASETKRLDREEADAANEVPMNSEGGRARDEDYPSGEFEFEKFGPWRSFLVKLKMLVAFPWERVRKGSVLTMKLRGQISDQLKSRFSSGLSLPQICENFVKAAYDPRISGIYLQIEALNCGWGKVEELRRHILNFKKSGKFIVAYIPTCQEKEYYLACACEEIYAPPSAYVSLFGLTVQASFLRGIFDKIGIEPQVERIGKYKSAGDQLARRNMSEENCEMLTTLLDNIYDNWLDKISSIKGKKKEDIESFINEGVYQIERLKEDGWITNIQYEDEILSMLNERLGLPKDKKVPMVDYRKYSKVRQSTVGLSGGGDQIAVIRAGGSISRVKSPLSVPSSGIIGEQFIEKIRSVRESKKFKAAIIRIDSPGGDALASDLMWREIRLLAASKPVVASMADVAASGGYYMAMAAGTIVAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGRFAELLAAEQRPFRPDEAELFAKSAQNAYKQFRDKAAFSRSMTVDEMEKVAQGRVWTGKLAASHGLVDAIGGFSRAVAIAKQKANIPQDSKVNLVELSRPSPTLLEVVSGVGSTIIGVEGTVKELLQDLALSEGVQARMEGIMLQRMEGFAYGNSVFGLIKDYLSFL 684
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1189558 1197545 - CmoCh11G002380.1 Cmo11g00238 390857

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00238 684 Gene3D - 529 647 - -
Cmo11g00238 684 PIRSF Protease_4_SppA 84 683 IPR004634 GO:0006465|GO:0008233|GO:0016021
Cmo11g00238 684 SUPERFAMILY ClpP/crotonase 122 340 IPR029045 -
Cmo11g00238 684 TIGRFAM SppA_dom: signal peptide peptidase SppA, 36K type 407 599 IPR004635 GO:0006508|GO:0008233
Cmo11g00238 684 Pfam Peptidase family S49 452 603 IPR002142 GO:0006508|GO:0008233
Cmo11g00238 684 Pfam Peptidase family S49 201 350 IPR002142 GO:0006508|GO:0008233
Cmo11g00238 684 PANTHER PROTEASE 4 60 682 - -
Cmo11g00238 684 CDD S49_Sppa_N_C 383 598 IPR002142 GO:0006508|GO:0008233
Cmo11g00238 684 SUPERFAMILY ClpP/crotonase 376 589 IPR029045 -
Cmo11g00238 684 MobiDBLite consensus disorder prediction 72 99 - -
Cmo11g00238 684 CDD S49_SppA_67K_type 136 349 - -
Cmo11g00238 684 Gene3D - 133 369 - -
Cmo11g00238 684 Gene3D - 379 528 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00238 K04773 sppA; protease IV [EC:3.4.21.-] - csv:101211243 1166.76
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g408 . . . . . . . . . . . Cma11g00235 . Car11g00212 Sed12g2036 . Cpe04g01437 Bhi02g00045 Tan09g1990 Cmetu02g0800 . Hepe09g0301 . . . . . . . . . . Cone16ag0253 . . . . . . . . . . . . . . . . Cmo11g00238 . . . . . . . . . . . . . . . . . . . . Lsi06g01380 Csa01g00322 Chy02g02419 Cme02g01796
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010220 1 2 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g00238 Cmo_Chr11 FPKM 4.134987 5.209067 3.802734 4.658491 5.984099 3.139135 5.133413 3.149053 2.604159 2.979507