Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00252 ATGTCCGTTGAAAATTCTGATATCCAAACCAATATTCTCAACATTCATATTCTTCTCGTCCTAACTTTACCCCACTTCCAATCTCATGAAGTTGATGTTGGTTTACAATACATGGCTGGAGATATATCTGGCGGTAATGCTCGTTGTATAGCAATGCTCCATGCATTTCAGGAGGCTATTAAAGACTACTCAACTCCGCCACAGAAATCTCTCGTTAGAGATTTAACTGCAAAAATTGGTGTCTATGTGTCATTCTTTAATGAATGCAGGCCATTGTCTGTTAGCATGGGTAATGCAATCAGATTTTTGAAAAATCGCATTGCCAAATTACCACCAAGTCTTCTAGAATCTGAGGCGAAAGCTACACTTTCCCTAGATATCAGTCGTTTTATCAATGAGAAGATAATGCTTGCTGATGAGGTCATAGTTAGACACGCTGCTACCAAGATCAGGGATGGAGACGTTCTTCTCACATATGGATCACCATGTGTTGTAGAGATGCTTCTATTGTATGCTCATGATCTTGGGAAACAATTTCGTGTTGTGGTGGTAGATTCTCGACCAAAACTTGAGGGCCAAGCATTGCTGCGTAGGCTGATAGCAAAGGGCCTCAGTTGTACTTACACTCATATAAATGCTATTTCCTATGTGATGGGTGAAGTAAACCGAGTTTTTTTGGGTGCTGCTGCTGTATTAGCTAACGGAACTGTATATTCAAGAGTGGGGACTGCAGGTATTGCCATGGTTGCAGATGCATTTCATGTTCCAGTATTATTCTGCTGTGAAGCATATAAATTTCATGAAAGGGTACAACTTGATTCAATATGCTTTAATGAATTAGGGGACCCAGATGCTATATCAAAGATTTTTGGAAGGGCTGATATTAGTTATCTAGATAGTCTGACTTCTAAAGAACATTTGCAACTTCTGAATTTAATGTATGATGCTACACCTTCAGATTACATCTCAATGATTGTCACAGATTATGGCATGATCCCGCCAACAAGCGTGCCCGTGATCGTACGCGAGTATCGCAGAGAGCACCTCCTATGGCATAACGACTCGGAAGATATCACACTGCTCAAACACTACTACCTTAAACTATCGAACAAAAACAACAGCCGCCTGAGATCAGGGCATTGTTCTTCAAATTAG 1155 40.52 MSVENSDIQTNILNIHILLVLTLPHFQSHEVDVGLQYMAGDISGGNARCIAMLHAFQEAIKDYSTPPQKSLVRDLTAKIGVYVSFFNECRPLSVSMGNAIRFLKNRIAKLPPSLLESEAKATLSLDISRFINEKIMLADEVIVRHAATKIRDGDVLLTYGSPCVVEMLLLYAHDLGKQFRVVVVDSRPKLEGQALLRRLIAKGLSCTYTHINAISYVMGEVNRVFLGAAAVLANGTVYSRVGTAGIAMVADAFHVPVLFCCEAYKFHERVQLDSICFNELGDPDAISKIFGRADISYLDSLTSKEHLQLLNLMYDATPSDYISMIVTDYGMIPPTSVPVIVREYRREHLLWHNDSEDITLLKHYYLKLSNKNNSRLRSGHCSSN 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1242944 1246047 + CmoCh11G002520.1 Cmo11g00252 390871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00252 384 Pfam Initiation factor 2 subunit family 42 334 IPR000649 GO:0044237
Cmo11g00252 384 Gene3D - 137 344 IPR042529 -
Cmo11g00252 384 PANTHER NAGB/RPIA/COA TRANSFERASE-LIKE SUPERFAMILY PROTEIN 31 350 - -
Cmo11g00252 384 PANTHER TRANSLATION INITIATION FACTOR EIF-2B 31 350 - -
Cmo11g00252 384 SUPERFAMILY NagB/RpiA/CoA transferase-like 41 344 IPR037171 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo10g00273 Cmo11g00252 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02312 Cmo-Chr4:17194349 Cmo11g00252 Cmo-Chr11:1242944 8.04E-18 dispersed
Cmo11g00252 Cmo-Chr11:1242944 Cmo15g00850 Cmo-Chr15:4301204 3.09E-19 dispersed
Cmo11g00252 Cmo-Chr11:1242944 Cmo11g00254 Cmo-Chr11:1247375 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00252 K03680 - csv:101214144 551.206