Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00254 ATGGATGCTCGGCGAGGATCCCGCGTCGTCAAACCCAAAGTTCGTCAGGTCGGATTCTTCACCCTCGACGCTCCAAACCCCCCCGGACGCTCCCTATCCGGTCCGGTCGGCTTTGGTCCTTCTCAACAATCCCTCTCTCCTCCCACCGATCCCTTGTCTCCGGTCATGATTCCTCCTCCTCGTCATCTCTCCGATAACCTTGCCTCACGCTCTACTATGCTCCCTGTTCCGACGCCGGCCAATTGGAGAAATTCCGGTGATCAGATTCATGTTGGCAGTTATAACCCTTCCCAGACCCTGCTTGCGACTTCTCCTTCGAGTAGAATTTGGGACGATGAGCTGGAGATGTCCGAGGATTCTTCCACCTCCGTTCCGTATCGCCGGAGTGGTTCCGGGAAGATTGCGTCGAGCCTTCCTGGGCTTGGAGTCCACATGGCGGCTAAGTCGTCGGAGAATTCGCAGGCGGTGCCTCTCAGGACGTTGGGACCTAATAAGCCTGCTGGAGTTGCAGAAAATAATGGAGGGGCATCCACAGAGGTGCAAAATCAACCACCACCATCAAGTTCAAAACCCCTGAAGGCAAAAACAACGAAGGCTGAAAGACGGGCTCTGCAGGAGGCACAACGAGCAGCAAAAGTTTCTGCAAAAGGTGAGGCGAATAAGTCAGGTACTGTTCCTGGTAAAGCTGTGAAGCAGCCTTCGGCTATGAAAGATAGCACTGCTGCACCTTCGGTTGCATCTACTGACAAAAGAGGAGGTGATCGCACAGTTGATAAAGAAAGGAAGAAAGATGCGCCCCATCCACGAATGCAGTTTGATGATAAAAATAGGGTAGAAAAGGCTAAAAAGCGAGCAGTTTTCAACCAAACTGAAGCTCGAAATAGGGTTGAATTATTTCGCCATTTGCCTCAATATGAGCAGGGAACTCAGCTTCCTGATCTCGTGTCGAAGTTTTTCCAACTTGACACCATTCATCCTGCCATTTACAAGGTTGGTTTACAATATATGGCCGGAGATATATGTGGAGGCAATGCTCGCTGTATTGCTATGCTTCATGCCTTTCAACAGGCCATCAAAGACTACTCAACTCCGCCACAGAAATCTCTGGGTAGAGATTTAACTGCAAAAATTGGTGGCTATGTGTCATTCTTCAACGAGTGCAGGCCACTATCTGTTAGCATGGGAAATGCAATTAGGTTTCTGAAGAACCGCATTGCCAAATTACCAGTGAATCTTCTGGAATCTGAAGTAAAAGCTACACTTTGCTCAGATATTGATCGCTTTATCAATGAGAAGATTATCATTGCAGATGAGGTCATAGTTAGACATGCTGCTACTAAAATCAGGGATGGAGATGTTCTTCTCACATATGGATCATCATGTGCTGTAGAGATGCTTCTATTATATGCACATGAACTCGGAAAAGAATTCCGTGTTGTGGTGGTGGATTCCCGACCAAAACTGGAAGGGCAAGCATTGCTTCGTAGGCTAATAGCAAGCGGCCTAAAGTGTACCTACACTCATATAAATGCTATTTCTTACGTGATGCACGAAGTAACACGAGTTTTTCTGGGGGCCGCTGCAGTATTGTCTAATGGAACTGTATATTCTAGAGTGGGAACTGCAGGTGTTGCCATGGTTGCTAATGCATTCCATGTTCCAGTCTTAATCTGCTGCGAAGCCTATAAATTCCATGAAAGGGTACAGCTTGACTCAATATGTTTCAATGAATTAGGTGATCCAGATGCTATTTCAAAGGTCCCAGGAAGGAAGGATGTTAATTATCTAGATAATTTGGCTGCTAAAGAACAACTGCAATGTCTAAATTTAATGTATGATGCTACACCTTCAGATTATGTCTCAATGATTGTCACAGATTATGGCATGATCCCGCCTACAAGCGTACCCGTGATCGTACGCGAGTATCGGAGAGAGCACCTGTGGATTTAA 1950 46.72 MDARRGSRVVKPKVRQVGFFTLDAPNPPGRSLSGPVGFGPSQQSLSPPTDPLSPVMIPPPRHLSDNLASRSTMLPVPTPANWRNSGDQIHVGSYNPSQTLLATSPSSRIWDDELEMSEDSSTSVPYRRSGSGKIASSLPGLGVHMAAKSSENSQAVPLRTLGPNKPAGVAENNGGASTEVQNQPPPSSSKPLKAKTTKAERRALQEAQRAAKVSAKGEANKSGTVPGKAVKQPSAMKDSTAAPSVASTDKRGGDRTVDKERKKDAPHPRMQFDDKNRVEKAKKRAVFNQTEARNRVELFRHLPQYEQGTQLPDLVSKFFQLDTIHPAIYKVGLQYMAGDICGGNARCIAMLHAFQQAIKDYSTPPQKSLGRDLTAKIGGYVSFFNECRPLSVSMGNAIRFLKNRIAKLPVNLLESEVKATLCSDIDRFINEKIIIADEVIVRHAATKIRDGDVLLTYGSSCAVEMLLLYAHELGKEFRVVVVDSRPKLEGQALLRRLIASGLKCTYTHINAISYVMHEVTRVFLGAAAVLSNGTVYSRVGTAGVAMVANAFHVPVLICCEAYKFHERVQLDSICFNELGDPDAISKVPGRKDVNYLDNLAAKEQLQCLNLMYDATPSDYVSMIVTDYGMIPPTSVPVIVREYRREHLWI 649
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1247375 1252717 + CmoCh11G002540.1 Cmo11g00254 390873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00254 649 SUPERFAMILY NagB/RpiA/CoA transferase-like 295 642 IPR037171 -
Cmo11g00254 649 MobiDBLite consensus disorder prediction 251 272 - -
Cmo11g00254 649 PANTHER TRANSLATION INITIATION FACTOR EIF-2B 1 649 - -
Cmo11g00254 649 Gene3D - 435 642 IPR042529 -
Cmo11g00254 649 MobiDBLite consensus disorder prediction 65 106 - -
Cmo11g00254 649 MobiDBLite consensus disorder prediction 20 272 - -
Cmo11g00254 649 MobiDBLite consensus disorder prediction 174 193 - -
Cmo11g00254 649 MobiDBLite consensus disorder prediction 36 50 - -
Cmo11g00254 649 Pfam Initiation factor 2 subunit family 341 632 IPR000649 GO:0044237
Cmo11g00254 649 PANTHER NAGB/RPIA/COA TRANSFERASE-LIKE SUPERFAMILY PROTEIN 1 649 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00273 Cmo-Chr10:1221877 Cmo11g00254 Cmo-Chr11:1247375 0 dispersed
Cmo11g00254 Cmo-Chr11:1247375 Cmo15g00850 Cmo-Chr15:4301204 5.65E-18 dispersed
Cmo11g00251 Cmo-Chr11:1239904 Cmo11g00254 Cmo-Chr11:1247375 3.06E-148 proximal
Cmo11g00252 Cmo-Chr11:1242944 Cmo11g00254 Cmo-Chr11:1247375 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00254 K03680 - csv:101214144 1119.38