Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00257 ATGCATATATCAACAATGCCCCTCCACCACCACTCCACCTCCTTCATCGCCTTTTTCGATTCCGATCTTCTTCAATCGGTGGGATCGCCGTCGTCATTTTCCGGTTTCGCCAATTTAGTTTTCTCTGTTGGCTTCTCTGACGCCGTAAGTATGGAGCCGATGGACATAGTTGGAAAGTCTAAAGAGGACGCCTCGCTTCCTAAGGCGACTATGACTAAAATTATCAAAGAGATGTTGCCCCCTGATGTTCGTGTTGCAAGAGATGCCCAAGATCTTCTGATTGAGTGTTGTGTAGAGTTTATAAACCTTGTGTCGTCGGAGTCCAATGAAGTTTGTAGCAAAGAAGATAAAAGAACAATTGCACCTGAGCACGTGCTCAAGGCTCTTGAGGTGCTTGGTTTTAGTGAGTACATTGAGGAAGTTTATGCTGCATATGAACAACACAGGCTCGAAACTATGCAAGACTCGTTGAAAGGTGGAAAGTGGAGTAATGGAGCCGAGATGACTGAAGAAGAAGCTTTGGCTGAGCAGCAAAGAATGTTTGCAGAAGCACGTGCAAGAATGAATGGGAGTAACACCGCTCCGAAGCAACTGGAGCCTGAGCAAAGTTTAGAGAGCTAA 621 45.73 MHISTMPLHHHSTSFIAFFDSDLLQSVGSPSSFSGFANLVFSVGFSDAVSMEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEDKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRLETMQDSLKGGKWSNGAEMTEEEALAEQQRMFAEARARMNGSNTAPKQLEPEQSLES 206
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1261699 1265022 - CmoCh11G002570.1 Cmo11g00257 390876

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00257 206 PANTHER PROTEIN DR1 HOMOLOG 51 205 IPR044255 -
Cmo11g00257 206 MobiDBLite consensus disorder prediction 185 206 - -
Cmo11g00257 206 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 64 129 IPR003958 -
Cmo11g00257 206 SUPERFAMILY Histone-fold 62 192 IPR009072 GO:0046982
Cmo11g00257 206 MobiDBLite consensus disorder prediction 190 206 - -
Cmo11g00257 206 Gene3D Histone, subunit A 54 195 IPR009072 GO:0046982
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00257 K21751 DR1, NC2-beta; down-regulator of transcription 1 - csv:101214627 301.597
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00257 Cmo-Chr11:1261699 Cmo04g01312 Cmo-Chr4:6677894 3.06E-18 dispersed
Cmo10g00278 Cmo-Chr10:1237091 Cmo11g00257 Cmo-Chr11:1261699 3.68E-111 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo10g00278 . 9 157 CCAAT-DR1 Transcription Factor Family AT5G08190 84.6 7.3e-64 240.7
Cmo11g00257 . 51 202 CCAAT-DR1 Transcription Factor Family AT5G08190 83.6 7.3e-64 240.7
Cmo10g00278 . 9 159 CCAAT-DR1 Transcription Factor Family AT5G23090 83.4 5.3e-67 251.1
Cmo11g00257 . 51 201 CCAAT-DR1 Transcription Factor Family AT5G23090 84.1 6.9e-67 250.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004258 4 2 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 0 1 1 1 1 1 1 1 0 3 2 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10533 PF00808 CBFD_NFYB_HMF 5.50E-22 CL0012 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g00257 Cmo_Chr11 FPKM 20.406487 19.740995 21.156675 22.544672 19.822624 18.206095 20.521238 11.352168 11.498153 12.133107