Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00257 ATGCATATATCAACAATGCCCCTCCACCACCACTCCACCTCCTTCATCGCCTTTTTCGATTCCGATCTTCTTCAATCGGTGGGATCGCCGTCGTCATTTTCCGGTTTCGCCAATTTAGTTTTCTCTGTTGGCTTCTCTGACGCCGTAAGTATGGAGCCGATGGACATAGTTGGAAAGTCTAAAGAGGACGCCTCGCTTCCTAAGGCGACTATGACTAAAATTATCAAAGAGATGTTGCCCCCTGATGTTCGTGTTGCAAGAGATGCCCAAGATCTTCTGATTGAGTGTTGTGTAGAGTTTATAAACCTTGTGTCGTCGGAGTCCAATGAAGTTTGTAGCAAAGAAGATAAAAGAACAATTGCACCTGAGCACGTGCTCAAGGCTCTTGAGGTGCTTGGTTTTAGTGAGTACATTGAGGAAGTTTATGCTGCATATGAACAACACAGGCTCGAAACTATGCAAGACTCGTTGAAAGGTGGAAAGTGGAGTAATGGAGCCGAGATGACTGAAGAAGAAGCTTTGGCTGAGCAGCAAAGAATGTTTGCAGAAGCACGTGCAAGAATGAATGGGAGTAACACCGCTCCGAAGCAACTGGAGCCTGAGCAAAGTTTAGAGAGCTAA 621 45.73 MHISTMPLHHHSTSFIAFFDSDLLQSVGSPSSFSGFANLVFSVGFSDAVSMEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEDKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRLETMQDSLKGGKWSNGAEMTEEEALAEQQRMFAEARARMNGSNTAPKQLEPEQSLES 206
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1261699 1265022 - CmoCh11G002570.1 Cmo11g00257 390876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00257 206 PANTHER PROTEIN DR1 HOMOLOG 51 205 IPR044255 -
Cmo11g00257 206 MobiDBLite consensus disorder prediction 185 206 - -
Cmo11g00257 206 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 64 129 IPR003958 -
Cmo11g00257 206 SUPERFAMILY Histone-fold 62 192 IPR009072 GO:0046982
Cmo11g00257 206 MobiDBLite consensus disorder prediction 190 206 - -
Cmo11g00257 206 Gene3D Histone, subunit A 54 195 IPR009072 GO:0046982
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00257 Cmo-Chr11:1261699 Cmo04g01312 Cmo-Chr4:6677894 3.06E-18 dispersed
Cmo10g00278 Cmo-Chr10:1237091 Cmo11g00257 Cmo-Chr11:1261699 3.68E-111 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10533 PF00808 CBFD_NFYB_HMF 5.50E-22 CL0012 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00257 K21751 - csv:101214627 301.597